Rh7AG381100

FHA domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0002999
Physical Location & Seq
Reverse (-)
49789027 .. 49790058
1032 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG381100.1

Sequence Viewer

Length: 1032 bp
ATGCTGGACGCTTTAGAAGCTCTCAAGCTCGAAATGCTCAAAGGCCCACGTGAGGGAGAAACCCTAGAGTACCGACCCAGATCCAAGGTCCGAATCGGCCGGGTCGTCCGCGGCAACAACCTCGCCATCAAAGACTCCGGCATTTCCACCAACCACCTCATCATCGACTTCGAATCGGGTAAATGGATGATCCGAGACCTCGACTCCTCCAACGGAACCATCGTAAACGACATCAAGCTCAAGCCGGACACGCCGTTGGAGCTGAACGACGGCGACGAGATAAAGATCGGGGAGTACACGTCGATCTCCGTCAAGATCGACGGCCACGAAGGGAGCCGGTTGAGAAGGAATCCGAGGCGCGGCGCGGTTGTGGAGAATCAGGGCCTCAGATGTAGGAAGGAAGAGAATTCTGAATTGGAGAGAGAGGGAGGAGAGGAAATTGAGGTGGTAGAGAAGCCGAAGAGGGGCCGGGGCCGGCCGAGGAAAGCTAGGGGGGTTTTGAAGAGTGAGGTTGCTGTGTCGGAAGTGAGTTCCAGAGATGTGGAAGCTAGGGATTTGGAGACTTGCAGTGTACAGTGTGAACAAGTGCAGATTGAACCTAAGGGGCGTGGTGGGGGGAGGAAGAGGAAGAATGTGCCGCTGATGTGTGAGAAAGATAATGTTGTGGCGGAGAAAGATTCGGGAGAAATTGGTCCCGTTGGTATTAATGGCGATAAAGGGGATGACTGTAATGTTGGAGTGGGTGGCGATAAGGTTGAAACTGGTAGTAGGAGCTGTTTTGGTGTTAGTGGTGCTAAGAATGTTGATAAAAAGGGGAATGGTTCTGGTGTTAAACAAGGTTGTTTGGGAAAGATTTGGCAGGAGCCAGATTTGGAGAAGATGACTTTGGATGATTGGTTTGATTATGTGCAAGTTTCTTTGCCGAAAGGGGTTAATGATGAGATTGACAAAATTTGTGCCGGAATGAGAGAGAAGGCTAAGCTAGTCCACGAGTATATAGCACAACACAAGAAGGAAAAGTGTCACAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FHA

Protein Analysis

343

Amino Acids

37.89

Weight (kDa)

6.97

Isoelectric Point (pI)

26.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yop-YscD_cpl PF16697 11 - 98 3.1e-10 Inner membrane component of T3SS, cytoplasmic domain
FHA PF00498 30 - 97 2e-17 FHA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 111, 360, 365
AciI CCGC 6 cut(s) 109, 111, 360, 365, 638, 668
AclWI GGATC 2 cut(s) 75, 184
AcoI YGGCCR 3 cut(s) 97, 322, 476
AcsI RAATTY 2 cut(s) 406, 951
AcvI CACGTG 1 cut(s) 50
AfaI GTAC 3 cut(s) 71, 296, 573
AfiI CCNNNNNNNGG 4 cut(s) 52, 53, 359, 464
AflIII ACRYGT 1 cut(s) 297
AgsI TTSAA 3 cut(s) 502, 596, 758
AjiI CACGTC 1 cut(s) 300
AjuI GAANNNNNNNTTGG 4 cut(s) 398, 430, 869, 901
AluBI AGCT 8 cut(s) 20, 28, 238, 262, 488, 548, 774, 982
AluI AGCT 8 cut(s) 20, 28, 238, 262, 488, 548, 774, 982
Alw26I GTCTC 2 cut(s) 189, 554
AlwI GGATC 2 cut(s) 75, 184
AoxI GGCC 7 cut(s) 43, 97, 322, 382, 466, 472, 476
ApoI RAATTY 2 cut(s) 406, 951
AseI ATTAAT 1 cut(s) 705
AspLEI GCGC 2 cut(s) 360, 365
AspS9I GGNCC 6 cut(s) 44, 88, 382, 466, 472, 692
AsuC2I CCSGG 2 cut(s) 101, 470
AsuII TTCGAA 1 cut(s) 171
AvaII GGWCC 2 cut(s) 88, 692
AxyI CCTNAGG 1 cut(s) 600
BauI CACGAG 1 cut(s) 989
BbrPI CACGTG 1 cut(s) 50
BccI CCATC 2 cut(s) 134, 227
BceAI ACGGC 3 cut(s) 238, 286, 337
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BcnI CCSGG 2 cut(s) 101, 470
BcoDI GTCTC 2 cut(s) 189, 554
BfaI CTAG 4 cut(s) 65, 489, 549, 983
BisI GCNGC 3 cut(s) 112, 361, 638
BlpI GCTNAGC 1 cut(s) 978
BlsI GCNGC 3 cut(s) 113, 362, 639
Bme1390I CCNGG 2 cut(s) 101, 470
Bme18I GGWCC 2 cut(s) 88, 692
BmgBI CACGTC 1 cut(s) 300
BmgT120I GGNCC 6 cut(s) 44, 88, 382, 466, 472, 692
BmiI GGNNCC 6 cut(s) 217, 335, 467, 473, 694, 864
BmrFI CCNGG 2 cut(s) 101, 470
Bpu1102I GCTNAGC 1 cut(s) 978
Bpu14I TTCGAA 1 cut(s) 171
BpuEI CTTGAG 2 cut(s) 8, 224
BpuMI CCSGG 2 cut(s) 101, 470
BsaAI YACGTR 1 cut(s) 50
BsaBI GATNNNNATC 1 cut(s) 284
BsaI GGTCTC 1 cut(s) 189
BsaJI CCNNGG 5 cut(s) 84, 109, 353, 469, 479
BsaXI ACNNNNNCTCC 4 cut(s) 188, 218, 284, 314
Bsc4I CCNNNNNNNGG 4 cut(s) 52, 53, 359, 464
Bse118I RCCGGY 2 cut(s) 336, 474
Bse1I ACTGG 1 cut(s) 766
Bse21I CCTNAGG 1 cut(s) 600
Bse8I GATNNNNATC 1 cut(s) 284
BseDI CCNNGG 5 cut(s) 84, 109, 353, 469, 479
BseGI GGATG 3 cut(s) 192, 727, 895
BseJI GATNNNNATC 1 cut(s) 284
BseLI CCNNNNNNNGG 4 cut(s) 52, 53, 359, 464
BseMII CTCAG 1 cut(s) 400
BseNI ACTGG 1 cut(s) 766
BseRI GAGGAG 2 cut(s) 196, 444
BseX3I CGGCCG 2 cut(s) 97, 476
BsgI GTGCAG 1 cut(s) 608
Bsh1236I CGCG 3 cut(s) 111, 360, 365
Bsh1285I CGRYCG 2 cut(s) 100, 479
BshFI GGCC 7 cut(s) 45, 99, 324, 384, 468, 474, 478
BsiEI CGRYCG 2 cut(s) 100, 479
BsiSI CCGG 7 cut(s) 100, 138, 245, 337, 469, 475, 960
BslFI GGGAC 1 cut(s) 678
BslI CCNNNNNNNGG 4 cut(s) 52, 53, 359, 464
BsmAI GTCTC 2 cut(s) 189, 554
BsmFI GGGAC 1 cut(s) 678
BsnI GGCC 7 cut(s) 45, 99, 324, 384, 468, 474, 478
Bso31I GGTCTC 1 cut(s) 189
Bsp119I TTCGAA 1 cut(s) 171
Bsp1407I TGTACA 1 cut(s) 571
Bsp143I GATC 5 cut(s) 80, 189, 285, 303, 315
Bsp1720I GCTNAGC 1 cut(s) 978
BspACI CCGC 6 cut(s) 109, 111, 360, 365, 638, 668
BspANI GGCC 7 cut(s) 45, 99, 324, 384, 468, 474, 478
BspCNI CTCAG 1 cut(s) 399
BspFNI CGCG 3 cut(s) 111, 360, 365
BspLI GGNNCC 6 cut(s) 217, 335, 467, 473, 694, 864
BspPI GGATC 2 cut(s) 75, 184
BspT104I TTCGAA 1 cut(s) 171
BspTNI GGTCTC 1 cut(s) 189
BsrFI RCCGGY 2 cut(s) 336, 474
BsrGI TGTACA 1 cut(s) 571
BsrI ACTGG 1 cut(s) 766
BssAI RCCGGY 2 cut(s) 336, 474
BssECI CCNNGG 5 cut(s) 84, 109, 353, 469, 479
BssMI GATC 5 cut(s) 80, 189, 285, 303, 315
BssSI CACGAG 1 cut(s) 989
BssT1I CCWWGG 1 cut(s) 84
Bst2BI CACGAG 1 cut(s) 989
Bst4CI ACNGT 3 cut(s) 576, 728, 1028
Bst6I CTCTTC 4 cut(s) 396, 455, 497, 617
BstAUI TGTACA 1 cut(s) 571
BstBAI YACGTR 1 cut(s) 50
BstBI TTCGAA 1 cut(s) 171
BstC8I GCNNGC 1 cut(s) 476
BstDEI CTNAG 4 cut(s) 386, 600, 795, 978
BstDSI CCRYGG 1 cut(s) 109
BstF5I GGATG 3 cut(s) 192, 727, 895
BstFNI CGCG 3 cut(s) 111, 360, 365
BstHHI GCGC 2 cut(s) 360, 365
BstKTI GATC 5 cut(s) 83, 192, 288, 306, 318
BstMAI GTCTC 2 cut(s) 189, 554
BstMBI GATC 5 cut(s) 80, 189, 285, 303, 315
BstMCI CGRYCG 2 cut(s) 100, 479
BstMWI GCNNNNNNNGC 4 cut(s) 17, 34, 250, 259
BstSCI CCNGG 2 cut(s) 99, 468
BstUI CGCG 3 cut(s) 111, 360, 365
BstX2I RGATCY 1 cut(s) 80
BstXI CCANNNNNNTGG 1 cut(s) 541
BstYI RGATCY 1 cut(s) 80
BstZI CGGCCG 2 cut(s) 97, 476
Bsu36I CCTNAGG 1 cut(s) 600
BsuRI GGCC 7 cut(s) 45, 99, 324, 384, 468, 474, 478
BtgI CCRYGG 1 cut(s) 109
BtrI CACGTC 1 cut(s) 300
BtsCI GGATG 3 cut(s) 192, 727, 895
BtsI GCAGTG 1 cut(s) 574
BtsIMutI CAGTG 2 cut(s) 574, 581
Cac8I GCNNGC 1 cut(s) 476
CfoI GCGC 2 cut(s) 360, 365
Cfr10I RCCGGY 2 cut(s) 336, 474
Cfr13I GGNCC 6 cut(s) 44, 88, 382, 466, 472, 692
Cfr42I CCGCGG 1 cut(s) 112
CseI GACGC 1 cut(s) 17
Csp6I GTAC 3 cut(s) 70, 295, 572
CviQI GTAC 3 cut(s) 70, 295, 572
DdeI CTNAG 4 cut(s) 386, 600, 795, 978
DpnI GATC 5 cut(s) 82, 191, 287, 305, 317
DpnII GATC 5 cut(s) 80, 189, 285, 303, 315
EaeI YGGCCR 3 cut(s) 97, 322, 476
EagI CGGCCG 2 cut(s) 97, 476
Eam1104I CTCTTC 4 cut(s) 396, 455, 497, 617
EarI CTCTTC 4 cut(s) 396, 455, 497, 617
EciI GGCGGA 1 cut(s) 683
EclXI CGGCCG 2 cut(s) 97, 476
Eco130I CCWWGG 1 cut(s) 84
Eco31I GGTCTC 1 cut(s) 189
Eco47I GGWCC 2 cut(s) 88, 692
Eco52I CGGCCG 2 cut(s) 97, 476
Eco72I CACGTG 1 cut(s) 50
Eco81I CCTNAGG 1 cut(s) 600
EcoO109I RGGNCCY 1 cut(s) 382
EcoRI GAATTC 1 cut(s) 406
EcoT14I CCWWGG 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 84
FaiI YATR 3 cut(s) 906, 996, 998
FaqI GGGAC 1 cut(s) 678
Fnu4HI GCNGC 3 cut(s) 112, 361, 638
FokI GGATG 3 cut(s) 199, 734, 902
FseI GGCCGGCC 1 cut(s) 478
Fsp4HI GCNGC 3 cut(s) 112, 361, 638
FspBI CTAG 4 cut(s) 65, 489, 549, 983
GlaI GCGC 2 cut(s) 359, 364
GluI GCNGC 3 cut(s) 112, 361, 638
HaeIII GGCC 7 cut(s) 45, 99, 324, 384, 468, 474, 478
HapII CCGG 7 cut(s) 100, 138, 245, 337, 469, 475, 960
HgaI GACGC 1 cut(s) 17
HhaI GCGC 2 cut(s) 360, 365
Hin6I GCGC 2 cut(s) 358, 363
HinP1I GCGC 2 cut(s) 358, 363
HinfI GANTC 7 cut(s) 93, 134, 173, 203, 349, 376, 677
HpaII CCGG 7 cut(s) 100, 138, 245, 337, 469, 475, 960
Hpy166II GTNNAC 5 cut(s) 226, 297, 572, 581, 988
Hpy188I TCNGA 6 cut(s) 92, 194, 354, 389, 412, 523
Hpy188III TCNNGA 3 cut(s) 313, 534, 681
Hpy8I GTNNAC 5 cut(s) 226, 297, 572, 581, 988
Hpy99I CGWCG 4 cut(s) 272, 278, 304, 323
HpyAV CCTTC 5 cut(s) 323, 339, 391, 967, 1006
HpyCH4III ACNGT 3 cut(s) 576, 728, 1028
HpyCH4IV ACGT 2 cut(s) 49, 299
HpyCH4V TGCA 3 cut(s) 567, 589, 910
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 34, 250, 259
HpyF3I CTNAG 4 cut(s) 386, 600, 795, 978
HpySE526I ACGT 2 cut(s) 49, 299
HspAI GCGC 2 cut(s) 358, 363
KroI GCCGGC 1 cut(s) 474
KroNI GCCGGC 1 cut(s) 476
KspI CCGCGG 1 cut(s) 112
Kzo9I GATC 5 cut(s) 80, 189, 285, 303, 315
LmnI GCTCC 4 cut(s) 259, 333, 771, 862
MaeI CTAG 4 cut(s) 65, 489, 549, 983
MaeII ACGT 2 cut(s) 49, 299
MaeIII GTNAC 1 cut(s) 1022
MalI GATC 5 cut(s) 82, 191, 287, 305, 317
MboI GATC 5 cut(s) 80, 189, 285, 303, 315
MboII GAAGA 6 cut(s) 413, 472, 514, 634, 640, 889
MflI RGATCY 1 cut(s) 80
MluCI AATT 5 cut(s) 406, 413, 438, 687, 951
MlyI GAGTC 2 cut(s) 128, 197
MmeI TCCRAC 4 cut(s) 234, 237, 501, 715
MroNI GCCGGC 1 cut(s) 474
MseI TTAA 4 cut(s) 705, 831, 933, 1030
MspA1I CMGCKG 2 cut(s) 111, 640
MspI CCGG 7 cut(s) 100, 138, 245, 337, 469, 475, 960
MspR9I CCNGG 2 cut(s) 101, 470
MteI GCGCNGCGC 1 cut(s) 361
MvnI CGCG 3 cut(s) 111, 360, 365
MwoI GCNNNNNNNGC 4 cut(s) 17, 34, 250, 259
NaeI GCCGGC 1 cut(s) 476
NciI CCSGG 2 cut(s) 101, 470
NdeII GATC 5 cut(s) 80, 189, 285, 303, 315
NgoMIV GCCGGC 1 cut(s) 474
NlaIV GGNNCC 6 cut(s) 217, 335, 467, 473, 694, 864
NmeAIII GCCGAG 1 cut(s) 504
NmuCI GTSAC 1 cut(s) 1022
NspV TTCGAA 1 cut(s) 171
PcsI WCGNNNNNNNCGW 4 cut(s) 102, 219, 273, 324
PdiI GCCGGC 1 cut(s) 476
PfeI GAWTC 5 cut(s) 93, 173, 349, 376, 677
PkrI GCNGC 3 cut(s) 113, 362, 639
PleI GAGTC 2 cut(s) 128, 197
PmaCI CACGTG 1 cut(s) 50
PmlI CACGTG 1 cut(s) 50
PpsI GAGTC 2 cut(s) 128, 197
Ppu21I YACGTR 1 cut(s) 50
PshBI ATTAAT 1 cut(s) 705
PspCI CACGTG 1 cut(s) 50
PspN4I GGNNCC 6 cut(s) 217, 335, 467, 473, 694, 864
PspPI GGNCC 6 cut(s) 44, 88, 382, 466, 472, 692
PsuI RGATCY 1 cut(s) 80
RigI GGCCGGCC 1 cut(s) 478
RsaI GTAC 3 cut(s) 71, 296, 573
RsaNI GTAC 3 cut(s) 70, 295, 572
SacII CCGCGG 1 cut(s) 112
SaqAI TTAA 4 cut(s) 705, 831, 933, 1030
SatI GCNGC 3 cut(s) 112, 361, 638
Sau3AI GATC 5 cut(s) 80, 189, 285, 303, 315
Sau96I GGNCC 6 cut(s) 44, 88, 382, 466, 472, 692
SchI GAGTC 2 cut(s) 128, 197
ScrFI CCNGG 2 cut(s) 101, 470
Sfr303I CCGCGG 1 cut(s) 112
SfuI TTCGAA 1 cut(s) 171
SgrBI CCGCGG 1 cut(s) 112
SinI GGWCC 2 cut(s) 88, 692
SmlI CTYRAG 2 cut(s) 23, 239
SmoI CTYRAG 2 cut(s) 23, 239
Sse9I AATT 5 cut(s) 406, 413, 438, 687, 951
SsiI CCGC 6 cut(s) 109, 111, 360, 365, 638, 668
SspMI CTAG 4 cut(s) 65, 489, 549, 983
StyD4I CCNGG 2 cut(s) 99, 468
StyI CCWWGG 1 cut(s) 84
TaaI ACNGT 3 cut(s) 576, 728, 1028
TaiI ACGT 2 cut(s) 52, 302
TaqI TCGA 6 cut(s) 30, 165, 171, 201, 302, 318
TasI AATT 5 cut(s) 406, 413, 438, 687, 951
TatI WGTACW 2 cut(s) 294, 571
TauI GCSGC 3 cut(s) 114, 363, 640
TfiI GAWTC 5 cut(s) 93, 173, 349, 376, 677
Tru1I TTAA 4 cut(s) 705, 831, 933, 1030
Tru9I TTAA 4 cut(s) 705, 831, 933, 1030
TscAI CASTG 2 cut(s) 574, 581
TseFI GTSAC 1 cut(s) 1022
Tsp45I GTSAC 1 cut(s) 1022
TspGWI ACGGA 2 cut(s) 228, 298
TspRI CASTG 2 cut(s) 574, 581
VpaK11BI GGWCC 2 cut(s) 88, 692
VspI ATTAAT 1 cut(s) 705
XapI RAATTY 2 cut(s) 406, 951
XspI CTAG 4 cut(s) 65, 489, 549, 983
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.