Rh4DG032700

FHA domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Forward (+)
5491622 .. 5502722
11101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG032700.1

Sequence Viewer

Length: 1428 bp
ATGTTGTCAAATGCAGTTCATGATGTGTCTCAGCATATGGAAGAGGTGAGCCATGATATTTTTAAAGGAACTGAGCTACCAGAAACCAATCACATGGGCCTCTTTGCCAAGTACCGACCTGGATCCAAGGTCCGAATTGGCCGGGTCGTCCGCGGCAACAACCTCCCCATCAAAGACTCCGGCATTTCCACCAACCACCTCATCATCGACTCCTCCGAATCCGGTCAATGGATGATCCGAGACCTCGACTCCTCCAACGGAACCATTGTAAACGGCACCAAGCTCAAGCCGGACACGCCGTTGGAGCTGAGCGACGAGATCAAGATCGGGGAGTACACGTCGATCTCAGTCAAGATCGACGGCCACGAAGGGAGCAGGTTGAGAAGGAATCCGAGGCGCGGCGCGGCGGGGAAGGTGGGGACGGTTGCGGAGAGTCGGGGCCGGAGAGGGAGGGTTAAGAAGGAGAGTGAGGTCGAAGTGAAATTGGAGGTGGAGATTGAGAATGATGAGGAAATTGGTGTAGCAGCACCGGTTGCTGAGAATCGGGGCCGGAGAGGTAGGCCTGCGAAGAAGAAGGAAGAGAATTCTGAATTGGAGAGAAAGGGAGAGGAAGTTGAGGTGGTGGAGAAGCCAAAGAGGGGCCGGGGCCGGCCGAGGAAAGCTAGGGTTTTGAAGAGTGAGGATTTGGTGGAGGAGGTTGTTGTGCCGGAAGTGAGTTCGAGAGCAACTCAAAGGTGTAAGGATGTGGGAGCTGTGGTTCCGGATTCGGAGAATGGCAGTGTAGAGTGTGAACAAGTGAAGATTGAACCTAAGAAGAGGAAGAATGTGCAAGAAGTGCCGCGGGTGTGTGAAGAAGGTAATGTTGCGGCGGAGAAAGATTTGGGAGAAATTGGTCCAGTTGGTGTTAATGGCGATAATGATGATAAAGGGGATGTTCCGGAGAAGAAGGATTCGGGAGGAATAGGTCCAGTTGATATCAAGGAGAATGGCGTGTATGATGATGATGCTAAAGGGTTGAATTTGGGGGATGAAGAGGCAGCAGTCGGTTTTGATGTGGGAGAGAGTGGCAATGATAATGAGAAGGCAAAAGGGTCCAATTTGGGCCATGAAGAGGCAGCCATTGACTGTAATGTTGGAGAGAGTGGCGATAAGGTTGGAAGTGGTAGTTGGAGCTGTTTTGGTGTTAGTGGTGCTAAGGATGTTGATAAAAAGGGGACTGACTCTGGTGTTAAAGAAGGTTTGAGAAAAGTTTGGCAGGAGCCAGATTTGGAGAAGATGACTTTGGACGATTGGTTTGATTATGTGGAAGTTTCTTTGCCGAAAGCGGTTAATGATGAGATTGACAAGATTTGTTCCAGAATGAGAGAGAAGGCTAAGCTAGTCCAGGAGTATATAGCAAAACACAAGAAGGAGAAGTGTCAAAGTTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

475

Amino Acids

51.95

Weight (kDa)

5.33

Isoelectric Point (pI)

34.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yop-YscD_cpl PF16697 42 - 111 2.6e-07 Inner membrane component of T3SS, cytoplasmic domain
FHA PF00498 44 - 110 3.2e-15 FHA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 366
AccB1I GGYRCC 1 cut(s) 275
AccII CGCG 4 cut(s) 153, 399, 404, 841
AccIII TCCGGA 2 cut(s) 760, 937
AclWI GGATC 3 cut(s) 117, 130, 229
AcoI YGGCCR 3 cut(s) 139, 361, 650
AcsI RAATTY 2 cut(s) 583, 1018
AfaI GTAC 2 cut(s) 113, 335
AfiI CCNNNNNNNGG 4 cut(s) 228, 398, 638, 1111
AflIII ACRYGT 1 cut(s) 336
AgeI ACCGGT 1 cut(s) 529
AgsI TTSAA 3 cut(s) 673, 806, 1018
AjiI CACGTC 1 cut(s) 339
AjnI CCWGG 2 cut(s) 118, 1383
AjuI GAANNNNNNNTTGG 6 cut(s) 575, 607, 1150, 1182, 1265, 1297
AloI GAACNNNNNNTCC 2 cut(s) 741, 773
AluBI AGCT 7 cut(s) 76, 283, 307, 662, 752, 1173, 1378
AluI AGCT 7 cut(s) 76, 283, 307, 662, 752, 1173, 1378
Alw26I GTCTC 2 cut(s) 33, 234
AlwI GGATC 3 cut(s) 117, 130, 229
Aor13HI TCCGGA 2 cut(s) 760, 937
ApeKI GCWGC 3 cut(s) 524, 1037, 1115
ApoI RAATTY 2 cut(s) 583, 1018
ArsI GACNNNNNNTTYG 2 cut(s) 1277, 1309
AsiGI ACCGGT 1 cut(s) 529
AspLEI GCGC 2 cut(s) 399, 404
AsuC2I CCSGG 2 cut(s) 143, 644
AsuHPI GGTGA 1 cut(s) 58
AvaII GGWCC 4 cut(s) 130, 893, 965, 1092
BamHI GGATCC 1 cut(s) 122
BanI GGYRCC 1 cut(s) 275
BbvI GCAGC 3 cut(s) 536, 1049, 1127
BccI CCATC 1 cut(s) 176
BceAI ACGGC 3 cut(s) 283, 289, 376
BciT130I CCWGG 2 cut(s) 120, 1385
BcnI CCSGG 2 cut(s) 143, 644
BcoDI GTCTC 2 cut(s) 33, 234
BfaI CTAG 2 cut(s) 663, 1379
BfuAI ACCTGC 1 cut(s) 366
BisI GCNGC 8 cut(s) 154, 400, 405, 525, 839, 867, 1038, 1116
BlpI GCTNAGC 2 cut(s) 308, 1374
BlsI GCNGC 8 cut(s) 155, 401, 406, 526, 840, 868, 1039, 1117
Bme1390I CCNGG 4 cut(s) 120, 143, 644, 1385
Bme18I GGWCC 4 cut(s) 130, 893, 965, 1092
BmgBI CACGTC 1 cut(s) 339
BmrFI CCNGG 4 cut(s) 120, 143, 644, 1385
BmsI GCATC 1 cut(s) 994
BplI GAGNNNNNCTC 2 cut(s) 712, 744
Bpu10I CCTNAGC 1 cut(s) 1194
Bpu1102I GCTNAGC 2 cut(s) 308, 1374
BpuEI CTTGAG 1 cut(s) 269
BpuMI CCSGG 2 cut(s) 143, 644
BsaBI GATNNNNATC 1 cut(s) 323
BsaI GGTCTC 1 cut(s) 234
BsaJI CCNNGG 6 cut(s) 126, 151, 392, 643, 653, 839
BsaWI WCCGGW 4 cut(s) 221, 529, 760, 937
BsaXI ACNNNNNCTCC 8 cut(s) 233, 263, 323, 353, 597, 627, 741, 771
Bsc4I CCNNNNNNNGG 4 cut(s) 228, 398, 638, 1111
Bse118I RCCGGY 2 cut(s) 529, 648
Bse1I ACTGG 2 cut(s) 896, 968
Bse3DI GCAATG 1 cut(s) 1075
Bse8I GATNNNNATC 1 cut(s) 323
BseAI TCCGGA 2 cut(s) 760, 937
BseBI CCWGG 2 cut(s) 120, 1385
BseDI CCNNGG 6 cut(s) 126, 151, 392, 643, 653, 839
BseGI GGATG 5 cut(s) 237, 748, 937, 1033, 1204
BseJI GATNNNNATC 1 cut(s) 323
BseLI CCNNNNNNNGG 4 cut(s) 228, 398, 638, 1111
BseMI GCAATG 1 cut(s) 1075
BseMII CTCAG 5 cut(s) 44, 63, 299, 360, 528
BseNI ACTGG 2 cut(s) 896, 968
BseRI GAGGAG 3 cut(s) 202, 241, 707
BseX3I CGGCCG 1 cut(s) 650
BseXI GCAGC 3 cut(s) 536, 1049, 1127
Bsh1236I CGCG 4 cut(s) 153, 399, 404, 841
Bsh1285I CGRYCG 1 cut(s) 653
BshNI GGYRCC 1 cut(s) 275
BshTI ACCGGT 1 cut(s) 529
BsiEI CGRYCG 1 cut(s) 653
BslFI GGGAC 2 cut(s) 433, 1228
BslI CCNNNNNNNGG 4 cut(s) 228, 398, 638, 1111
BsmAI GTCTC 2 cut(s) 33, 234
BsmFI GGGAC 2 cut(s) 433, 1228
Bso31I GGTCTC 1 cut(s) 234
Bsp13I TCCGGA 2 cut(s) 760, 937
Bsp143I GATC 6 cut(s) 122, 234, 318, 324, 342, 354
Bsp1720I GCTNAGC 2 cut(s) 308, 1374
BspCNI CTCAG 5 cut(s) 43, 64, 300, 359, 529
BspEI TCCGGA 2 cut(s) 760, 937
BspFNI CGCG 4 cut(s) 153, 399, 404, 841
BspHI TCATGA 1 cut(s) 19
BspMI ACCTGC 1 cut(s) 366
BspPI GGATC 3 cut(s) 117, 130, 229
BspT107I GGYRCC 1 cut(s) 275
BspTNI GGTCTC 1 cut(s) 234
BsrDI GCAATG 1 cut(s) 1075
BsrFI RCCGGY 2 cut(s) 529, 648
BsrI ACTGG 2 cut(s) 896, 968
BssAI RCCGGY 2 cut(s) 529, 648
BssECI CCNNGG 6 cut(s) 126, 151, 392, 643, 653, 839
BssMI GATC 6 cut(s) 122, 234, 318, 324, 342, 354
BssT1I CCWWGG 1 cut(s) 126
Bst2UI CCWGG 2 cut(s) 120, 1385
Bst4CI ACNGT 2 cut(s) 424, 1127
Bst6I CTCTTC 6 cut(s) 36, 573, 668, 809, 1026, 1104
BstAPI GCANNNNNTGC 2 cut(s) 533, 835
BstC8I GCNNGC 2 cut(s) 564, 650
BstDEI CTNAG 8 cut(s) 30, 72, 308, 346, 537, 810, 1194, 1374
BstDSI CCRYGG 2 cut(s) 151, 839
BstF5I GGATG 5 cut(s) 237, 748, 937, 1033, 1204
BstFNI CGCG 4 cut(s) 153, 399, 404, 841
BstHHI GCGC 2 cut(s) 399, 404
BstKTI GATC 6 cut(s) 125, 237, 321, 327, 345, 357
BstMAI GTCTC 2 cut(s) 33, 234
BstMBI GATC 6 cut(s) 122, 234, 318, 324, 342, 354
BstMCI CGRYCG 1 cut(s) 653
BstMWI GCNNNNNNNGC 4 cut(s) 295, 304, 533, 835
BstNI CCWGG 2 cut(s) 120, 1385
BstSCI CCNGG 4 cut(s) 118, 141, 642, 1383
BstUI CGCG 4 cut(s) 153, 399, 404, 841
BstV1I GCAGC 3 cut(s) 536, 1049, 1127
BstX2I RGATCY 1 cut(s) 122
BstXI CCANNNNNNTGG 1 cut(s) 94
BstYI RGATCY 1 cut(s) 122
BstZI CGGCCG 1 cut(s) 650
BtgI CCRYGG 2 cut(s) 151, 839
BtrI CACGTC 1 cut(s) 339
BtsCI GGATG 5 cut(s) 237, 748, 937, 1033, 1204
BtsI GCAGTG 1 cut(s) 784
BtsIMutI CAGTG 1 cut(s) 784
BveI ACCTGC 1 cut(s) 366
Cac8I GCNNGC 2 cut(s) 564, 650
CciI TCATGA 1 cut(s) 19
CfoI GCGC 2 cut(s) 399, 404
Cfr10I RCCGGY 2 cut(s) 529, 648
Cfr42I CCGCGG 2 cut(s) 154, 842
Csp6I GTAC 2 cut(s) 112, 334
CspAI ACCGGT 1 cut(s) 529
CviAII CATG 4 cut(s) 20, 53, 94, 1106
CviQI GTAC 2 cut(s) 112, 334
DdeI CTNAG 8 cut(s) 30, 72, 308, 346, 537, 810, 1194, 1374
DpnI GATC 6 cut(s) 124, 236, 320, 326, 344, 356
DpnII GATC 6 cut(s) 122, 234, 318, 324, 342, 354
DraI TTTAAA 1 cut(s) 64
EaeI YGGCCR 3 cut(s) 139, 361, 650
EagI CGGCCG 1 cut(s) 650
Eam1104I CTCTTC 6 cut(s) 36, 573, 668, 809, 1026, 1104
EarI CTCTTC 6 cut(s) 36, 573, 668, 809, 1026, 1104
EciI GGCGGA 1 cut(s) 884
EclXI CGGCCG 1 cut(s) 650
Eco130I CCWWGG 1 cut(s) 126
Eco147I AGGCCT 1 cut(s) 562
Eco31I GGTCTC 1 cut(s) 234
Eco32I GATATC 1 cut(s) 976
Eco47I GGWCC 4 cut(s) 130, 893, 965, 1092
Eco52I CGGCCG 1 cut(s) 650
EcoRI GAATTC 1 cut(s) 583
EcoRII CCWGG 2 cut(s) 118, 1383
EcoRV GATATC 1 cut(s) 976
EcoT14I CCWWGG 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 4 cut(s) 23, 56, 97, 1109
FaqI GGGAC 2 cut(s) 433, 1228
FatI CATG 4 cut(s) 19, 52, 93, 1105
FauI CCCGC 2 cut(s) 400, 834
FauNDI CATATG 1 cut(s) 36
Fnu4HI GCNGC 8 cut(s) 154, 400, 405, 525, 839, 867, 1038, 1116
FokI GGATG 5 cut(s) 244, 755, 944, 1040, 1211
FseI GGCCGGCC 1 cut(s) 652
Fsp4HI GCNGC 8 cut(s) 154, 400, 405, 525, 839, 867, 1038, 1116
FspBI CTAG 2 cut(s) 663, 1379
GlaI GCGC 2 cut(s) 398, 403
GluI GCNGC 8 cut(s) 154, 400, 405, 525, 839, 867, 1038, 1116
HhaI GCGC 2 cut(s) 399, 404
Hin1II CATG 4 cut(s) 23, 56, 97, 1109
Hin6I GCGC 2 cut(s) 397, 402
HinP1I GCGC 2 cut(s) 397, 402
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 3 cut(s) 271, 336, 791
Hpy188I TCNGA 6 cut(s) 134, 217, 239, 393, 589, 769
Hpy188III TCNNGA 8 cut(s) 20, 322, 352, 720, 761, 938, 954, 1356
Hpy8I GTNNAC 3 cut(s) 271, 336, 791
Hpy99I CGWCG 3 cut(s) 317, 343, 362
HpyCH4III ACNGT 2 cut(s) 424, 1127
HpyCH4IV ACGT 1 cut(s) 338
HpyCH4V TGCA 2 cut(s) 14, 829
HpyF10VI GCNNNNNNNGC 4 cut(s) 295, 304, 533, 835
HpyF3I CTNAG 8 cut(s) 30, 72, 308, 346, 537, 810, 1194, 1374
HpySE526I ACGT 1 cut(s) 338
Hsp92II CATG 4 cut(s) 23, 56, 97, 1109
HspAI GCGC 2 cut(s) 397, 402
Kpn2I TCCGGA 2 cut(s) 760, 937
KroI GCCGGC 1 cut(s) 648
KroNI GCCGGC 1 cut(s) 650
KspI CCGCGG 2 cut(s) 154, 842
Kzo9I GATC 6 cut(s) 122, 234, 318, 324, 342, 354
LmnI GCTCC 5 cut(s) 304, 372, 749, 1170, 1258
Lsp1109I GCAGC 3 cut(s) 536, 1049, 1127
LweI GCATC 1 cut(s) 994
MaeI CTAG 2 cut(s) 663, 1379
MaeII ACGT 1 cut(s) 338
MalI GATC 6 cut(s) 124, 236, 320, 326, 344, 356
MboI GATC 6 cut(s) 122, 234, 318, 324, 342, 354
MflI RGATCY 1 cut(s) 122
MluCI AATT 8 cut(s) 135, 482, 513, 583, 590, 888, 1018, 1096
MlyI GAGTC 5 cut(s) 170, 203, 242, 442, 1214
MmeI TCCRAC 5 cut(s) 279, 282, 1114, 1135, 1148
MroI TCCGGA 2 cut(s) 760, 937
MroNI GCCGGC 1 cut(s) 648
MseI TTAA 6 cut(s) 63, 456, 906, 1230, 1329, 1426
MspA1I CMGCKG 2 cut(s) 153, 841
MspR9I CCNGG 4 cut(s) 120, 143, 644, 1385
MteI GCGCNGCGC 1 cut(s) 400
MvaI CCWGG 2 cut(s) 120, 1385
MvnI CGCG 4 cut(s) 153, 399, 404, 841
MwoI GCNNNNNNNGC 4 cut(s) 295, 304, 533, 835
NaeI GCCGGC 1 cut(s) 650
NciI CCSGG 2 cut(s) 143, 644
NdeI CATATG 1 cut(s) 36
NdeII GATC 6 cut(s) 122, 234, 318, 324, 342, 354
NgoMIV GCCGGC 1 cut(s) 648
NlaIII CATG 4 cut(s) 23, 56, 97, 1109
NmeAIII GCCGAG 1 cut(s) 678
PagI TCATGA 1 cut(s) 19
PceI AGGCCT 1 cut(s) 562
PcsI WCGNNNNNNNCGW 2 cut(s) 213, 363
PdiI GCCGGC 1 cut(s) 650
PfeI GAWTC 5 cut(s) 218, 388, 541, 764, 950
PfoI TCCNGGA 1 cut(s) 1383
PinAI ACCGGT 1 cut(s) 529
PkrI GCNGC 8 cut(s) 155, 401, 406, 526, 840, 868, 1039, 1117
PleI GAGTC 5 cut(s) 170, 203, 242, 441, 1214
PpsI GAGTC 5 cut(s) 170, 203, 242, 441, 1214
Psp6I CCWGG 2 cut(s) 118, 1383
PspGI CCWGG 2 cut(s) 118, 1383
PsuI RGATCY 1 cut(s) 122
RigI GGCCGGCC 1 cut(s) 652
RsaI GTAC 2 cut(s) 113, 335
RsaNI GTAC 2 cut(s) 112, 334
SacII CCGCGG 2 cut(s) 154, 842
SaqAI TTAA 6 cut(s) 63, 456, 906, 1230, 1329, 1426
SatI GCNGC 8 cut(s) 154, 400, 405, 525, 839, 867, 1038, 1116
Sau3AI GATC 6 cut(s) 122, 234, 318, 324, 342, 354
SchI GAGTC 5 cut(s) 170, 203, 242, 442, 1214
ScrFI CCNGG 4 cut(s) 120, 143, 644, 1385
SfaNI GCATC 1 cut(s) 994
Sfr303I CCGCGG 2 cut(s) 154, 842
SgrBI CCGCGG 2 cut(s) 154, 842
SinI GGWCC 4 cut(s) 130, 893, 965, 1092
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 8 cut(s) 135, 482, 513, 583, 590, 888, 1018, 1096
SseBI AGGCCT 1 cut(s) 562
SspMI CTAG 2 cut(s) 663, 1379
StuI AGGCCT 1 cut(s) 562
StyD4I CCNGG 4 cut(s) 118, 141, 642, 1383
StyI CCWWGG 1 cut(s) 126
TaaI ACNGT 2 cut(s) 424, 1127
TaiI ACGT 1 cut(s) 341
TaqI TCGA 6 cut(s) 207, 246, 341, 357, 474, 719
TasI AATT 8 cut(s) 135, 482, 513, 583, 590, 888, 1018, 1096
TatI WGTACW 1 cut(s) 333
TauI GCSGC 5 cut(s) 156, 402, 407, 841, 869
TfiI GAWTC 5 cut(s) 218, 388, 541, 764, 950
Tru1I TTAA 6 cut(s) 63, 456, 906, 1230, 1329, 1426
Tru9I TTAA 6 cut(s) 63, 456, 906, 1230, 1329, 1426
TscAI CASTG 1 cut(s) 784
TseI GCWGC 3 cut(s) 524, 1037, 1115
TspDTI ATGAA 3 cut(s) 8, 1044, 1122
TspGWI ACGGA 1 cut(s) 273
TspRI CASTG 1 cut(s) 784
VpaK11BI GGWCC 4 cut(s) 130, 893, 965, 1092
XapI RAATTY 2 cut(s) 583, 1018
XspI CTAG 2 cut(s) 663, 1379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.