Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032072.1

Orthogroup ID

OG0002999

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1874

Gene Structure 1874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032072.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ggagggcgggcagaacggtcatttccggaggaggcactattcattccttttgtcgctctcgcatatgctcgaaatgagaattttccctctgaaactgagactgagactgagaattcaaaaagatgggtggagcctttagcagctctcaagctcgaaatgctcaaaggccctcgtgagggagaaaccctagagtaccgacccagatccaaggtccgaatcggccgggtcgtccgcggcaacaacctcgccatcaaagactccggcatttccaccaaccacctcatcatccactccgactccgaatcggggggtcaatggatgatccgagacctcgactcctccaacggaaccgtcgtcaacgacaccaagctcaagccggacacgccgctggagctgaacgacggcgacgagatcaagatcggggagtacacgtcgatctccgtccacaggttgagaaggaatccgaggcgcggcgcggttgtggagaattctgaattggagagagagggagaggaaattgaggtggtagagaagccgaagaggggttttgaagagaagaggaagaatgtgcaacaagagccgctcatgtgtgagaaagataatgttgttgtgggagagagtggcaatgatagtgagaaggcaaaagggtccaattcgggccatgcagaggcagccactgactgtaatgttggagtgggtggcgatgaggttgaaagtggtagtaggagctgttttggtgctaagaatgttgataaaaaggggaatggttctggtgttaaacaaggttgtttgggaaagatttggcaggagccagatttggagaagatgactttggatgattggttttattatgtgcaagtttctttgccgataggggttaatgatgagattgacaagatttgtgccggaatgagacacaaggctaagctagtccaggagcatatagcacaacacaacaaggacaagtgtttgaacgtttctttaattacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

330

Amino Acids

36.62

Weight (kDa)

5.42

Isoelectric Point (pI)

43.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14490
fragaria_vesca	FvH4_4g02980 FvH4_4g02980 FvH4_4g02980 FvH4_4g02980
malus_domestica	MD13G1205500.v1.1 MD16G1211500.v1.1
prunus_persica	Prupe.1G033600_v2.0.a1
pyrus_communis	pycom13g17820 pycom16g17730
rosa_chinensis	RchiOBHm_Chr4g0391131 RchiOBHm_Chr7g0211851 RchiOBHm_Chr7g0224291
rosa_laevigata	RLG00000009886
rosa_multiflora	Rmu_co8378449.1_g000001 Rmu_sc0001824.1_g000046 Rmu_sc0008872.1_g000006 Rmu_sc0009005.1_g000005 Rmu_sc0009448.1_g000001 Rmu_sc0028516.1_g000002 Rmu_sc0030074.1_g000001 Rmu_sc0032072.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247360 Rroxscaffold_5G00336920
rosa_rugosa	Rorug03G0334400
rosa_samantha	Rh4AG034800 Rh4BG030000 Rh4CG038600 Rh4DG032000 Rh4DG032700 Rh7AG262000 Rh7AG381100 Rh7BG255700 Rh7CG400500 Rh7DG268500 Rh7DG367500
rosa_wichuraiana	Rw4G002710 Rw7G031100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	583
AccII	CGCG	3 cut(s)	234, 471, 476
AccIII	TCCGGA	1 cut(s)	25
AciI	CCGC	7 cut(s)	7, 232, 234, 386, 471, 476, 581
AclI	AACGTT	1 cut(s)	975
AclWI	GGATC	2 cut(s)	198, 316
AcoI	YGGCCR	1 cut(s)	220
AcsI	RAATTY	3 cut(s)	79, 112, 487
AfaI	GTAC	2 cut(s)	194, 428
AfiI	CCNNNNNNNGG	7 cut(s)	175, 176, 306, 447, 470, 542, 667
AflIII	ACRYGT	1 cut(s)	429
AgsI	TTSAA	4 cut(s)	117, 551, 713, 973
AjiI	CACGTC	1 cut(s)	432
AjnI	CCWGG	1 cut(s)	933
AjuI	GAANNNNNNNTTGG	4 cut(s)	479, 511, 815, 847
AluBI	AGCT	6 cut(s)	143, 151, 370, 394, 729, 928
AluI	AGCT	6 cut(s)	143, 151, 370, 394, 729, 928
Alw26I	GTCTC	4 cut(s)	92, 98, 321, 907
AlwI	GGATC	2 cut(s)	198, 316
AlwNI	CAGNNNCTG	1 cut(s)	677
Aor13HI	TCCGGA	1 cut(s)	25
AoxI	GGCC	3 cut(s)	166, 220, 658
ApeKI	GCWGC	2 cut(s)	140, 671
ApoI	RAATTY	3 cut(s)	79, 112, 487
AspLEI	GCGC	2 cut(s)	471, 476
AspS9I	GGNCC	4 cut(s)	167, 211, 648, 658
AsuC2I	CCSGG	1 cut(s)	224
AvaII	GGWCC	2 cut(s)	211, 648
BauI	CACGAG	1 cut(s)	171
BbvI	GCAGC	2 cut(s)	152, 683
BccI	CCATC	2 cut(s)	117, 257
BceAI	ACGGC	1 cut(s)	418
BcgI	CGANNNNNNTGC	2 cut(s)	226, 260
BciT130I	CCWGG	1 cut(s)	935
BcnI	CCSGG	1 cut(s)	224
BcoDI	GTCTC	4 cut(s)	92, 98, 321, 907
BfaI	CTAG	2 cut(s)	188, 929
BisI	GCNGC	6 cut(s)	141, 235, 386, 472, 581, 672
BlpI	GCTNAGC	1 cut(s)	924
BlsI	GCNGC	6 cut(s)	142, 236, 387, 473, 582, 673
Bme1390I	CCNGG	2 cut(s)	224, 935
Bme18I	GGWCC	2 cut(s)	211, 648
BmgBI	CACGTC	1 cut(s)	432
BmgT120I	GGNCC	4 cut(s)	167, 211, 648, 658
BmiI	GGNNCC	4 cut(s)	132, 349, 649, 810
BmrFI	CCNGG	2 cut(s)	224, 935
BpmI	CTGGAG	1 cut(s)	410
Bpu1102I	GCTNAGC	1 cut(s)	924
BpuEI	CTTGAG	2 cut(s)	131, 356
BpuMI	CCSGG	1 cut(s)	224
BsaBI	GATNNNNATC	1 cut(s)	416
BsaI	GGTCTC	1 cut(s)	321
BsaJI	CCNNGG	3 cut(s)	207, 232, 464
BsaWI	WCCGGW	1 cut(s)	25
BsaXI	ACNNNNNCTCC	6 cut(s)	281, 311, 320, 350, 416, 446
Bsc4I	CCNNNNNNNGG	7 cut(s)	175, 176, 306, 447, 470, 542, 667
Bse3DI	GCAATG	1 cut(s)	631
Bse8I	GATNNNNATC	1 cut(s)	416
BseAI	TCCGGA	1 cut(s)	25
BseBI	CCWGG	1 cut(s)	935
BseDI	CCNNGG	3 cut(s)	207, 232, 464
BseGI	GGATG	3 cut(s)	285, 324, 841
BseJI	GATNNNNATC	1 cut(s)	416
BseLI	CCNNNNNNNGG	7 cut(s)	175, 176, 306, 447, 470, 542, 667
BseMI	GCAATG	1 cut(s)	631
BseMII	CTCAG	3 cut(s)	87, 93, 99
BseRI	GAGGAG	2 cut(s)	44, 328
BseX3I	CGGCCG	1 cut(s)	220
BseXI	GCAGC	2 cut(s)	152, 683
Bsh1236I	CGCG	3 cut(s)	234, 471, 476
Bsh1285I	CGRYCG	1 cut(s)	223
BshFI	GGCC	3 cut(s)	168, 222, 660
BsiEI	CGRYCG	1 cut(s)	223
BsiSI	CCGG	5 cut(s)	26, 223, 261, 377, 906
BslI	CCNNNNNNNGG	7 cut(s)	175, 176, 306, 447, 470, 542, 667
BsmAI	GTCTC	4 cut(s)	92, 98, 321, 907
BsnI	GGCC	3 cut(s)	168, 222, 660
Bso31I	GGTCTC	1 cut(s)	321
Bsp13I	TCCGGA	1 cut(s)	25
Bsp143I	GATC	5 cut(s)	203, 321, 411, 417, 435
Bsp1720I	GCTNAGC	1 cut(s)	924
BspACI	CCGC	7 cut(s)	7, 232, 234, 386, 471, 476, 581
BspANI	GGCC	3 cut(s)	168, 222, 660
BspCNI	CTCAG	3 cut(s)	88, 94, 100
BspEI	TCCGGA	1 cut(s)	25
BspFNI	CGCG	3 cut(s)	234, 471, 476
BspLI	GGNNCC	4 cut(s)	132, 349, 649, 810
BspPI	GGATC	2 cut(s)	198, 316
BspTNI	GGTCTC	1 cut(s)	321
BsrBI	CCGCTC	1 cut(s)	583
BsrDI	GCAATG	1 cut(s)	631
BssECI	CCNNGG	3 cut(s)	207, 232, 464
BssMI	GATC	5 cut(s)	203, 321, 411, 417, 435
BssSI	CACGAG	1 cut(s)	171
BssT1I	CCWWGG	1 cut(s)	207
Bst2BI	CACGAG	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	935
Bst4CI	ACNGT	3 cut(s)	18, 352, 683
Bst6I	CTCTTC	3 cut(s)	533, 546, 551
BstC8I	GCNNGC	1 cut(s)	9
BstDEI	CTNAG	6 cut(s)	96, 102, 108, 741, 924, 990
BstDSI	CCRYGG	1 cut(s)	232
BstF5I	GGATG	3 cut(s)	285, 324, 841
BstFNI	CGCG	3 cut(s)	234, 471, 476
BstHHI	GCGC	2 cut(s)	471, 476
BstKTI	GATC	5 cut(s)	206, 324, 414, 420, 438
BstMAI	GTCTC	4 cut(s)	92, 98, 321, 907
BstMBI	GATC	5 cut(s)	203, 321, 411, 417, 435
BstMCI	CGRYCG	1 cut(s)	223
BstMWI	GCNNNNNNNGC	5 cut(s)	157, 382, 391, 577, 671
BstNI	CCWGG	1 cut(s)	935
BstSCI	CCNGG	2 cut(s)	222, 933
BstUI	CGCG	3 cut(s)	234, 471, 476
BstV1I	GCAGC	2 cut(s)	152, 683
BstX2I	RGATCY	1 cut(s)	203
BstYI	RGATCY	1 cut(s)	203
BstZI	CGGCCG	1 cut(s)	220
BsuRI	GGCC	3 cut(s)	168, 222, 660
BtgI	CCRYGG	1 cut(s)	232
BtgZI	GCGATG	1 cut(s)	717
BtrI	CACGTC	1 cut(s)	432
BtsCI	GGATG	3 cut(s)	285, 324, 841
BtsIMutI	CAGTG	1 cut(s)	675
Cac8I	GCNNGC	1 cut(s)	9
CaiI	CAGNNNCTG	1 cut(s)	677
CfoI	GCGC	2 cut(s)	471, 476
Cfr13I	GGNCC	4 cut(s)	167, 211, 648, 658
Cfr42I	CCGCGG	1 cut(s)	235
Csp6I	GTAC	2 cut(s)	193, 427
CviAII	CATG	2 cut(s)	586, 662
CviQI	GTAC	2 cut(s)	193, 427
DdeI	CTNAG	6 cut(s)	96, 102, 108, 741, 924, 990
DpnI	GATC	5 cut(s)	205, 323, 413, 419, 437
DpnII	GATC	5 cut(s)	203, 321, 411, 417, 435
EaeI	YGGCCR	1 cut(s)	220
EagI	CGGCCG	1 cut(s)	220
Eam1104I	CTCTTC	3 cut(s)	533, 546, 551
EarI	CTCTTC	3 cut(s)	533, 546, 551
EclXI	CGGCCG	1 cut(s)	220
Eco130I	CCWWGG	1 cut(s)	207
Eco31I	GGTCTC	1 cut(s)	321
Eco47I	GGWCC	2 cut(s)	211, 648
Eco52I	CGGCCG	1 cut(s)	220
EcoO109I	RGGNCCY	1 cut(s)	167
EcoRI	GAATTC	2 cut(s)	112, 487
EcoRII	CCWGG	1 cut(s)	933
EcoT14I	CCWWGG	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	207
FaeI	CATG	2 cut(s)	589, 665
FaiI	YATR	7 cut(s)	64, 66, 587, 663, 852, 942, 944
FatI	CATG	2 cut(s)	585, 661
FauNDI	CATATG	1 cut(s)	64
Fnu4HI	GCNGC	6 cut(s)	141, 235, 386, 472, 581, 672
FokI	GGATG	3 cut(s)	272, 331, 848
Fsp4HI	GCNGC	6 cut(s)	141, 235, 386, 472, 581, 672
FspBI	CTAG	2 cut(s)	188, 929
GlaI	GCGC	2 cut(s)	470, 475
GluI	GCNGC	6 cut(s)	141, 235, 386, 472, 581, 672
GsuI	CTGGAG	1 cut(s)	410
HaeIII	GGCC	3 cut(s)	168, 222, 660
HapII	CCGG	5 cut(s)	26, 223, 261, 377, 906
HhaI	GCGC	2 cut(s)	471, 476
Hin1II	CATG	2 cut(s)	589, 665
Hin6I	GCGC	2 cut(s)	469, 474
HinP1I	GCGC	2 cut(s)	469, 474
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HinfI	GANTC	6 cut(s)	216, 257, 296, 302, 335, 460
HpaII	CCGG	5 cut(s)	26, 223, 261, 377, 906
Hpy166II	GTNNAC	3 cut(s)	358, 429, 445
Hpy188I	TCNGA	7 cut(s)	91, 215, 295, 301, 326, 465, 493
Hpy188III	TCNNGA	3 cut(s)	26, 173, 415
Hpy8I	GTNNAC	3 cut(s)	358, 429, 445
Hpy99I	CGWCG	4 cut(s)	356, 404, 410, 436
HpyAV	CCTTC	2 cut(s)	450, 631
HpyCH4III	ACNGT	3 cut(s)	18, 352, 683
HpyCH4IV	ACGT	2 cut(s)	431, 975
HpyCH4V	TGCA	3 cut(s)	571, 665, 856
HpyF10VI	GCNNNNNNNGC	5 cut(s)	157, 382, 391, 577, 671
HpyF3I	CTNAG	6 cut(s)	96, 102, 108, 741, 924, 990
HpySE526I	ACGT	2 cut(s)	431, 975
Hsp92II	CATG	2 cut(s)	589, 665
HspAI	GCGC	2 cut(s)	469, 474
Kpn2I	TCCGGA	1 cut(s)	25
KspI	CCGCGG	1 cut(s)	235
Kzo9I	GATC	5 cut(s)	203, 321, 411, 417, 435
LmnI	GCTCC	5 cut(s)	130, 391, 726, 808, 937
Lsp1109I	GCAGC	2 cut(s)	152, 683
MaeI	CTAG	2 cut(s)	188, 929
MaeII	ACGT	2 cut(s)	431, 975
MalI	GATC	5 cut(s)	205, 323, 413, 419, 437
MbiI	CCGCTC	1 cut(s)	583
MboI	GATC	5 cut(s)	203, 321, 411, 417, 435
MboII	GAAGA	5 cut(s)	550, 563, 568, 574, 835
MflI	RGATCY	1 cut(s)	203
MluCI	AATT	7 cut(s)	79, 112, 487, 494, 516, 652, 984
MlyI	GAGTC	3 cut(s)	251, 290, 329
MmeI	TCCRAC	3 cut(s)	318, 366, 670
MroI	TCCGGA	1 cut(s)	25
MseI	TTAA	3 cut(s)	777, 879, 983
MspA1I	CMGCKG	2 cut(s)	234, 388
MspI	CCGG	5 cut(s)	26, 223, 261, 377, 906
MspR9I	CCNGG	2 cut(s)	224, 935
MteI	GCGCNGCGC	1 cut(s)	472
MvaI	CCWGG	1 cut(s)	935
MvnI	CGCG	3 cut(s)	234, 471, 476
MwoI	GCNNNNNNNGC	5 cut(s)	157, 382, 391, 577, 671
NciI	CCSGG	1 cut(s)	224
NdeI	CATATG	1 cut(s)	64
NdeII	GATC	5 cut(s)	203, 321, 411, 417, 435
NlaIII	CATG	2 cut(s)	589, 665
NlaIV	GGNNCC	4 cut(s)	132, 349, 649, 810
PcsI	WCGNNNNNNNCGW	3 cut(s)	225, 351, 405
PfeI	GAWTC	3 cut(s)	216, 302, 460
PfoI	TCCNGGA	1 cut(s)	933
PkrI	GCNGC	6 cut(s)	142, 236, 387, 473, 582, 673
PleI	GAGTC	3 cut(s)	251, 290, 329
PpsI	GAGTC	3 cut(s)	251, 290, 329
Psp1406I	AACGTT	1 cut(s)	975
Psp6I	CCWGG	1 cut(s)	933
PspGI	CCWGG	1 cut(s)	933
PspN4I	GGNNCC	4 cut(s)	132, 349, 649, 810
PspPI	GGNCC	4 cut(s)	167, 211, 648, 658
PstNI	CAGNNNCTG	1 cut(s)	677
PsuI	RGATCY	1 cut(s)	203
RsaI	GTAC	2 cut(s)	194, 428
RsaNI	GTAC	2 cut(s)	193, 427
SacII	CCGCGG	1 cut(s)	235
SaqAI	TTAA	3 cut(s)	777, 879, 983
SatI	GCNGC	6 cut(s)	141, 235, 386, 472, 581, 672
Sau3AI	GATC	5 cut(s)	203, 321, 411, 417, 435
Sau96I	GGNCC	4 cut(s)	167, 211, 648, 658
SchI	GAGTC	3 cut(s)	251, 290, 329
ScrFI	CCNGG	2 cut(s)	224, 935
Sfr303I	CCGCGG	1 cut(s)	235
SgrBI	CCGCGG	1 cut(s)	235
SinI	GGWCC	2 cut(s)	211, 648
SmlI	CTYRAG	2 cut(s)	146, 371
SmoI	CTYRAG	2 cut(s)	146, 371
Sse9I	AATT	7 cut(s)	79, 112, 487, 494, 516, 652, 984
SsiI	CCGC	7 cut(s)	7, 232, 234, 386, 471, 476, 581
SspMI	CTAG	2 cut(s)	188, 929
StyD4I	CCNGG	2 cut(s)	222, 933
StyI	CCWWGG	1 cut(s)	207
TaaI	ACNGT	3 cut(s)	18, 352, 683
TaiI	ACGT	2 cut(s)	434, 978
TaqI	TCGA	4 cut(s)	70, 153, 333, 434
TasI	AATT	7 cut(s)	79, 112, 487, 494, 516, 652, 984
TatI	WGTACW	1 cut(s)	426
TauI	GCSGC	4 cut(s)	237, 388, 474, 583
TfiI	GAWTC	3 cut(s)	216, 302, 460
Tru1I	TTAA	3 cut(s)	777, 879, 983
Tru9I	TTAA	3 cut(s)	777, 879, 983
TscAI	CASTG	1 cut(s)	682
TseI	GCWGC	2 cut(s)	140, 671
TspDTI	ATGAA	1 cut(s)	31
TspGWI	ACGGA	2 cut(s)	360, 430
TspRI	CASTG	1 cut(s)	682
VpaK11BI	GGWCC	2 cut(s)	211, 648
XapI	RAATTY	3 cut(s)	79, 112, 487
XspI	CTAG	2 cut(s)	188, 929

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.