Rh7BG255700

FHA domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0002999
Physical Location & Seq
Forward (+)
23288751 .. 23292139
3389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG255700.1

Sequence Viewer

Length: 1026 bp
ATGCTGGAGCCTTTAGCAGCTCTCAAGCTCCAAATGCTCAAAGGCCCCCGTGAGGGAGAAACCCTAGAGTACCGACCCGGTTCCAAGGTCCGAATCGGCCGGGTCGTCCGCGGCAACAACCTCGCCATCAAAGACTCCGGCATTTCCACCAACCACCTCCTCATCGACTCCGAATCGGGTCAATGGATGATCCGAGACCTCGACTCCTCCAACGGAACCATCGTAAACGACACCAAGCTCAAGCCGGACACGCCGTTGGAGCTGAACGACGGTGACGAGATAAAGATCGGGGAGTTCACGTCGATCTCCGTCAACATCGACGGCCACGAAGGGAGCAGGTTGAGAAGGAATCCGAGGCGCGGCGTGGCGGCGGGGAAGAAGAAGAAGAAGAAGGAAGAGAATTCTGAATTGGAGAGAGAGGGAAAGGAAATTGAGGTGGTAGAGAAGCCGAAGAGGGGCCGGGGCCGGCCGAGGAAAGCTAGGGGGGTTTTGTTGAAGAGTGAGGATTTGGTGGAGGAGGTTGCTGTGTCGGAACCACAGGTTCCGGATTCGGAGACTTGCAGTGAACAAGTGAAGATTGAACCTAAGAGGCGTGGTGGGGGGAGGAAGAGGAAGAATGTCCAACAAACGTGTGAGAAAGATAATGTTGTGGGAGAGAGTGGCAATGATAGTGAGATGGCAAAAGGGTCCAATTCGGGCCATGAAGAGGCAGCCACTGACTGTAATGTTGGAGTGGGTGGCGATAAGGTTGAAAGTGGTAGTAGTAGGAGCTGTTTTGGTGTTAGTGGTGCTAAGAATGTTGATAAAAAGGGGAATGGTTCTGGTGTTAAACAAGGTTTGGGAAAGATTTGGCAGGAGCCAGATTTGGAGAAGATGACTTTGGATGATTGGTTTTATTATGTGCAAGTTTCTTTGCCGAAAGGGGTTAATGATGAGATTGACAAGATTTGTGCCGGAATGAGACAGAAGGCTAAGCTAGTCCAGGAGTATATAGCCCAACACAAGAAGGAGAAGTGTCACAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FHA

Protein Analysis

341

Amino Acids

37.52

Weight (kDa)

8.7

Isoelectric Point (pI)

39.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yop-YscD_cpl PF16697 12 - 99 9.1e-11 Inner membrane component of T3SS, cytoplasmic domain
FHA PF00498 30 - 97 5.7e-18 FHA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 327
AccII CGCG 2 cut(s) 111, 360
AccIII TCCGGA 1 cut(s) 544
AciI CCGC 5 cut(s) 109, 111, 360, 368, 371
AclWI GGATC 1 cut(s) 184
AcoI YGGCCR 3 cut(s) 97, 322, 467
AcsI RAATTY 1 cut(s) 400
AfaI GTAC 1 cut(s) 71
AfiI CCNNNNNNNGG 5 cut(s) 52, 53, 359, 455, 706
AflIII ACRYGT 1 cut(s) 629
AgsI TTSAA 3 cut(s) 496, 581, 752
AjiI CACGTC 1 cut(s) 300
AjnI CCWGG 1 cut(s) 981
AjuI GAANNNNNNNTTGG 4 cut(s) 392, 424, 863, 895
AluBI AGCT 7 cut(s) 20, 28, 238, 262, 479, 771, 976
AluI AGCT 7 cut(s) 20, 28, 238, 262, 479, 771, 976
Alw26I GTCTC 3 cut(s) 189, 548, 955
AlwI GGATC 1 cut(s) 184
AlwNI CAGNNNCTG 1 cut(s) 716
Aor13HI TCCGGA 1 cut(s) 544
AoxI GGCC 7 cut(s) 43, 97, 322, 457, 463, 467, 697
ApeKI GCWGC 2 cut(s) 17, 710
ApoI RAATTY 1 cut(s) 400
AspLEI GCGC 1 cut(s) 360
AspS9I GGNCC 6 cut(s) 44, 88, 457, 463, 687, 697
AsuC2I CCSGG 3 cut(s) 78, 101, 461
AsuHPI GGTGA 1 cut(s) 284
AvaII GGWCC 2 cut(s) 88, 687
BbvI GCAGC 2 cut(s) 29, 722
BccI CCATC 3 cut(s) 134, 227, 670
BceAI ACGGC 2 cut(s) 238, 337
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BciT130I CCWGG 1 cut(s) 983
BcnI CCSGG 3 cut(s) 78, 101, 461
BcoDI GTCTC 3 cut(s) 189, 548, 955
BfaI CTAG 3 cut(s) 65, 480, 977
BfuAI ACCTGC 1 cut(s) 327
BisI GCNGC 5 cut(s) 18, 112, 361, 369, 711
BlpI GCTNAGC 1 cut(s) 972
BlsI GCNGC 5 cut(s) 19, 113, 362, 370, 712
Bme1390I CCNGG 4 cut(s) 78, 101, 461, 983
Bme18I GGWCC 2 cut(s) 88, 687
BmgBI CACGTC 1 cut(s) 300
BmgT120I GGNCC 6 cut(s) 44, 88, 457, 463, 687, 697
BmrFI CCNGG 4 cut(s) 78, 101, 461, 983
BpmI CTGGAG 1 cut(s) 26
Bpu1102I GCTNAGC 1 cut(s) 972
BpuEI CTTGAG 2 cut(s) 8, 224
BpuMI CCSGG 3 cut(s) 78, 101, 461
BsaBI GATNNNNATC 1 cut(s) 284
BsaI GGTCTC 1 cut(s) 189
BsaJI CCNNGG 5 cut(s) 84, 109, 353, 460, 470
BsaWI WCCGGW 1 cut(s) 544
BsaXI ACNNNNNCTCC 4 cut(s) 188, 218, 284, 314
Bsc4I CCNNNNNNNGG 5 cut(s) 52, 53, 359, 455, 706
Bse118I RCCGGY 1 cut(s) 465
Bse3DI GCAATG 1 cut(s) 670
Bse8I GATNNNNATC 1 cut(s) 284
BseAI TCCGGA 1 cut(s) 544
BseBI CCWGG 1 cut(s) 983
BseDI CCNNGG 5 cut(s) 84, 109, 353, 460, 470
BseGI GGATG 2 cut(s) 192, 889
BseJI GATNNNNATC 1 cut(s) 284
BseLI CCNNNNNNNGG 5 cut(s) 52, 53, 359, 455, 706
BseMI GCAATG 1 cut(s) 670
BseRI GAGGAG 3 cut(s) 149, 196, 530
BseX3I CGGCCG 2 cut(s) 97, 467
BseXI GCAGC 2 cut(s) 29, 722
Bsh1236I CGCG 2 cut(s) 111, 360
Bsh1285I CGRYCG 2 cut(s) 100, 470
BshFI GGCC 7 cut(s) 45, 99, 324, 459, 465, 469, 699
BsiEI CGRYCG 2 cut(s) 100, 470
BsiSI CCGG 8 cut(s) 78, 100, 138, 245, 460, 466, 545, 954
BslI CCNNNNNNNGG 5 cut(s) 52, 53, 359, 455, 706
BsmAI GTCTC 3 cut(s) 189, 548, 955
BsnI GGCC 7 cut(s) 45, 99, 324, 459, 465, 469, 699
Bso31I GGTCTC 1 cut(s) 189
Bsp13I TCCGGA 1 cut(s) 544
Bsp143I GATC 3 cut(s) 189, 285, 303
Bsp1720I GCTNAGC 1 cut(s) 972
BspACI CCGC 5 cut(s) 109, 111, 360, 368, 371
BspANI GGCC 7 cut(s) 45, 99, 324, 459, 465, 469, 699
BspEI TCCGGA 1 cut(s) 544
BspFNI CGCG 2 cut(s) 111, 360
BspMI ACCTGC 1 cut(s) 327
BspPI GGATC 1 cut(s) 184
BspTNI GGTCTC 1 cut(s) 189
BsrDI GCAATG 1 cut(s) 670
BsrFI RCCGGY 1 cut(s) 465
BssAI RCCGGY 1 cut(s) 465
BssECI CCNNGG 5 cut(s) 84, 109, 353, 460, 470
BssMI GATC 3 cut(s) 189, 285, 303
BssT1I CCWWGG 1 cut(s) 84
Bst2UI CCWGG 1 cut(s) 983
Bst4CI ACNGT 3 cut(s) 272, 722, 1022
Bst6I CTCTTC 5 cut(s) 390, 446, 491, 602, 699
BstC8I GCNNGC 1 cut(s) 467
BstDEI CTNAG 3 cut(s) 585, 792, 972
BstDSI CCRYGG 1 cut(s) 109
BstF5I GGATG 2 cut(s) 192, 889
BstFNI CGCG 2 cut(s) 111, 360
BstHHI GCGC 1 cut(s) 360
BstKTI GATC 3 cut(s) 192, 288, 306
BstMAI GTCTC 3 cut(s) 189, 548, 955
BstMBI GATC 3 cut(s) 189, 285, 303
BstMCI CGRYCG 2 cut(s) 100, 470
BstMWI GCNNNNNNNGC 3 cut(s) 34, 250, 259
BstNI CCWGG 1 cut(s) 983
BstSCI CCNGG 4 cut(s) 76, 99, 459, 981
BstUI CGCG 2 cut(s) 111, 360
BstV1I GCAGC 2 cut(s) 29, 722
BstZI CGGCCG 2 cut(s) 97, 467
BsuRI GGCC 7 cut(s) 45, 99, 324, 459, 465, 469, 699
BtgI CCRYGG 1 cut(s) 109
BtrI CACGTC 1 cut(s) 300
BtsCI GGATG 2 cut(s) 192, 889
BtsI GCAGTG 1 cut(s) 568
BtsIMutI CAGTG 2 cut(s) 568, 714
BveI ACCTGC 1 cut(s) 327
Cac8I GCNNGC 1 cut(s) 467
CaiI CAGNNNCTG 1 cut(s) 716
CfoI GCGC 1 cut(s) 360
Cfr10I RCCGGY 1 cut(s) 465
Cfr13I GGNCC 6 cut(s) 44, 88, 457, 463, 687, 697
Cfr42I CCGCGG 1 cut(s) 112
Csp6I GTAC 1 cut(s) 70
CviAII CATG 1 cut(s) 701
CviQI GTAC 1 cut(s) 70
DdeI CTNAG 3 cut(s) 585, 792, 972
DpnI GATC 3 cut(s) 191, 287, 305
DpnII GATC 3 cut(s) 189, 285, 303
EaeI YGGCCR 3 cut(s) 97, 322, 467
EagI CGGCCG 2 cut(s) 97, 467
Eam1104I CTCTTC 5 cut(s) 390, 446, 491, 602, 699
EarI CTCTTC 5 cut(s) 390, 446, 491, 602, 699
EclXI CGGCCG 2 cut(s) 97, 467
Eco130I CCWWGG 1 cut(s) 84
Eco31I GGTCTC 1 cut(s) 189
Eco47I GGWCC 2 cut(s) 88, 687
Eco52I CGGCCG 2 cut(s) 97, 467
EcoO109I RGGNCCY 1 cut(s) 44
EcoRI GAATTC 1 cut(s) 400
EcoRII CCWGG 1 cut(s) 981
EcoT14I CCWWGG 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 84
FaeI CATG 1 cut(s) 704
FaiI YATR 4 cut(s) 702, 900, 990, 992
FatI CATG 1 cut(s) 700
FauI CCCGC 1 cut(s) 364
Fnu4HI GCNGC 5 cut(s) 18, 112, 361, 369, 711
FokI GGATG 2 cut(s) 199, 896
FseI GGCCGGCC 1 cut(s) 469
Fsp4HI GCNGC 5 cut(s) 18, 112, 361, 369, 711
FspBI CTAG 3 cut(s) 65, 480, 977
GlaI GCGC 1 cut(s) 359
GluI GCNGC 5 cut(s) 18, 112, 361, 369, 711
GsuI CTGGAG 1 cut(s) 26
HaeIII GGCC 7 cut(s) 45, 99, 324, 459, 465, 469, 699
HapII CCGG 8 cut(s) 78, 100, 138, 245, 460, 466, 545, 954
HhaI GCGC 1 cut(s) 360
Hin1II CATG 1 cut(s) 704
Hin6I GCGC 1 cut(s) 358
HinP1I GCGC 1 cut(s) 358
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HinfI GANTC 7 cut(s) 93, 134, 167, 173, 203, 349, 548
HpaII CCGG 8 cut(s) 78, 100, 138, 245, 460, 466, 545, 954
HphI GGTGA 1 cut(s) 284
Hpy166II GTNNAC 4 cut(s) 226, 297, 313, 566
Hpy188I TCNGA 7 cut(s) 92, 172, 194, 354, 406, 532, 553
Hpy188III TCNNGA 1 cut(s) 545
Hpy8I GTNNAC 4 cut(s) 226, 297, 313, 566
Hpy99I CGWCG 3 cut(s) 272, 304, 323
HpyAV CCTTC 5 cut(s) 323, 339, 385, 961, 1000
HpyCH4III ACNGT 3 cut(s) 272, 722, 1022
HpyCH4IV ACGT 2 cut(s) 299, 629
HpyCH4V TGCA 2 cut(s) 561, 904
HpyF10VI GCNNNNNNNGC 3 cut(s) 34, 250, 259
HpyF3I CTNAG 3 cut(s) 585, 792, 972
HpySE526I ACGT 2 cut(s) 299, 629
Hsp92II CATG 1 cut(s) 704
HspAI GCGC 1 cut(s) 358
Kpn2I TCCGGA 1 cut(s) 544
KroI GCCGGC 1 cut(s) 465
KroNI GCCGGC 1 cut(s) 467
KspI CCGCGG 1 cut(s) 112
Kzo9I GATC 3 cut(s) 189, 285, 303
LmnI GCTCC 6 cut(s) 7, 33, 259, 333, 768, 856
Lsp1109I GCAGC 2 cut(s) 29, 722
MaeI CTAG 3 cut(s) 65, 480, 977
MaeII ACGT 2 cut(s) 299, 629
MaeIII GTNAC 2 cut(s) 272, 1016
MalI GATC 3 cut(s) 191, 287, 305
MboI GATC 3 cut(s) 189, 285, 303
MluCI AATT 4 cut(s) 400, 407, 429, 691
MlyI GAGTC 3 cut(s) 128, 161, 197
MmeI TCCRAC 5 cut(s) 234, 237, 510, 646, 709
MroI TCCGGA 1 cut(s) 544
MroNI GCCGGC 1 cut(s) 465
MseI TTAA 3 cut(s) 828, 927, 1024
MspA1I CMGCKG 1 cut(s) 111
MspI CCGG 8 cut(s) 78, 100, 138, 245, 460, 466, 545, 954
MspR9I CCNGG 4 cut(s) 78, 101, 461, 983
MvaI CCWGG 1 cut(s) 983
MvnI CGCG 2 cut(s) 111, 360
MwoI GCNNNNNNNGC 3 cut(s) 34, 250, 259
NaeI GCCGGC 1 cut(s) 467
NciI CCSGG 3 cut(s) 78, 101, 461
NdeII GATC 3 cut(s) 189, 285, 303
NgoMIV GCCGGC 1 cut(s) 465
NlaIII CATG 1 cut(s) 704
NmeAIII GCCGAG 1 cut(s) 495
NmuCI GTSAC 2 cut(s) 272, 1016
PcsI WCGNNNNNNNCGW 4 cut(s) 102, 219, 273, 324
PdiI GCCGGC 1 cut(s) 467
PfeI GAWTC 4 cut(s) 93, 173, 349, 548
PfoI TCCNGGA 1 cut(s) 981
PkrI GCNGC 5 cut(s) 19, 113, 362, 370, 712
PleI GAGTC 3 cut(s) 128, 161, 197
PpsI GAGTC 3 cut(s) 128, 161, 197
Psp6I CCWGG 1 cut(s) 981
PspGI CCWGG 1 cut(s) 981
PspPI GGNCC 6 cut(s) 44, 88, 457, 463, 687, 697
PstNI CAGNNNCTG 1 cut(s) 716
RigI GGCCGGCC 1 cut(s) 469
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
SacII CCGCGG 1 cut(s) 112
SaqAI TTAA 3 cut(s) 828, 927, 1024
SatI GCNGC 5 cut(s) 18, 112, 361, 369, 711
Sau3AI GATC 3 cut(s) 189, 285, 303
Sau96I GGNCC 6 cut(s) 44, 88, 457, 463, 687, 697
SchI GAGTC 3 cut(s) 128, 161, 197
ScrFI CCNGG 4 cut(s) 78, 101, 461, 983
Sfr303I CCGCGG 1 cut(s) 112
SgrBI CCGCGG 1 cut(s) 112
SinI GGWCC 2 cut(s) 88, 687
SmlI CTYRAG 2 cut(s) 23, 239
SmoI CTYRAG 2 cut(s) 23, 239
Sse9I AATT 4 cut(s) 400, 407, 429, 691
SsiI CCGC 5 cut(s) 109, 111, 360, 368, 371
SspMI CTAG 3 cut(s) 65, 480, 977
StyD4I CCNGG 4 cut(s) 76, 99, 459, 981
StyI CCWWGG 1 cut(s) 84
TaaI ACNGT 3 cut(s) 272, 722, 1022
TaiI ACGT 2 cut(s) 302, 632
TaqI TCGA 4 cut(s) 165, 201, 302, 318
TasI AATT 4 cut(s) 400, 407, 429, 691
TauI GCSGC 3 cut(s) 114, 363, 371
TfiI GAWTC 4 cut(s) 93, 173, 349, 548
Tru1I TTAA 3 cut(s) 828, 927, 1024
Tru9I TTAA 3 cut(s) 828, 927, 1024
TscAI CASTG 2 cut(s) 568, 721
TseFI GTSAC 2 cut(s) 272, 1016
TseI GCWGC 2 cut(s) 17, 710
Tsp45I GTSAC 2 cut(s) 272, 1016
TspDTI ATGAA 1 cut(s) 717
TspGWI ACGGA 2 cut(s) 228, 298
TspRI CASTG 2 cut(s) 568, 721
VpaK11BI GGWCC 2 cut(s) 88, 687
XapI RAATTY 1 cut(s) 400
XspI CTAG 3 cut(s) 65, 480, 977
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.