Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0002999

Physical Location & Seq

Genomic Coordinates Forward (+)

44265273 .. 44266216

Gene Structure 944 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G031100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGCTGGACCCTTTAGCTCTCAAGCTCGAAATGCTCAAAGGCCCACGTGAGGGAGAAACCCTAGAGTACCGACCCAGATCCAAGGTCCGAATCGGCCGGGTCGTCCGCGGCAACAACCTCGCCATCAAAGACTCCGGCATTTCCACCAACCACCTCATCATCGACTTCGAATCGGGTAAATGGATGATCCGAGACCTCGACTCCTCCAACGGAACCATCGTAAACGACACCAAGCTCGAGCCGGACACGCCGTTGGAGCTGAACGACGGCGACGATATAAAGATCGGGGAGTACACGTCGATCTCCGTCAAGATAGACGGCCACGAAGGGAGCCGGTTGAGAAGGAATCCCAGGCGCGGCGCGGTTCAGGGCCTCAGATGTAGGAAGGAAGAGAATTCTGAATTGGAGAGAGAGGGAGAGGAAATTGAGGTGGTAGAGAAGCCGAAGAGGAAAGCTAGGGTTTTGAAGAGTGAGGTTGCTGTGTCGGAAGTGAGTTCCAGAGATGTGGAAGCTGTGGTGGGGGGAGGAAGAGGAAGAATGTGCAACAAGTGCCGCTCATATTCGGGAGAAATTGGTCCCGTTGGTATTAATGGCGATAAAGGGGATGACTGTAATGTTGGAGTGGGTGGCGATAAGGTTGAAAGTGGTAGTAGGAGCTGTTTTGGTCTTAGTGGTGCTAAGAATGTTGATAAAAAGGGGAATGGTTCTGGTGTTAAACAAGGTTTGGGAAAGATTTGGCAGGAGCCAGATTTGGAGAAGATGACTTTGGCTGATTGGTTTGATTATGTGCAAGTTTCTTTGCCGAAAGGGGTTAATGATGAGATTGACAAGATTTGTGCCGGAATGAGAGACAAGGCTAAGCTAGTCCAGGAGTACATAGCACAACACAAGAAGGAAAAGTGTCACAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

303

Amino Acids

33.35

Weight (kDa)

7.55

Isoelectric Point (pI)

27.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Yop-YscD_cpl	PF16697	10 - 97	4.7e-11	Inner membrane component of T3SS, cytoplasmic domain
FHA	PF00498	29 - 96	7e-18	FHA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14490
fragaria_vesca	FvH4_4g02980 FvH4_4g02980 FvH4_4g02980 FvH4_4g02980
malus_domestica	MD13G1205500.v1.1 MD16G1211500.v1.1
prunus_persica	Prupe.1G033600_v2.0.a1
pyrus_communis	pycom13g17820 pycom16g17730
rosa_chinensis	RchiOBHm_Chr4g0391131 RchiOBHm_Chr7g0211851 RchiOBHm_Chr7g0224291
rosa_laevigata	RLG00000009886
rosa_multiflora	Rmu_co8378449.1_g000001 Rmu_sc0001824.1_g000046 Rmu_sc0008872.1_g000006 Rmu_sc0009005.1_g000005 Rmu_sc0009448.1_g000001 Rmu_sc0028516.1_g000002 Rmu_sc0030074.1_g000001 Rmu_sc0032072.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247360 Rroxscaffold_5G00336920
rosa_rugosa	Rorug03G0334400
rosa_samantha	Rh4AG034800 Rh4BG030000 Rh4CG038600 Rh4DG032000 Rh4DG032700 Rh7AG262000 Rh7AG381100 Rh7BG255700 Rh7CG400500 Rh7DG268500 Rh7DG367500
rosa_wichuraiana	Rw4G002710 Rw7G031100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	555
AccII	CGCG	3 cut(s)	108, 357, 362
AciI	CCGC	5 cut(s)	106, 108, 357, 362, 553
AclWI	GGATC	2 cut(s)	72, 181
AcoI	YGGCCR	2 cut(s)	94, 319
AcsI	RAATTY	1 cut(s)	394
AcvI	CACGTG	1 cut(s)	47
AfaI	GTAC	3 cut(s)	68, 293, 875
AfiI	CCNNNNNNNGG	3 cut(s)	49, 50, 356
AflIII	ACRYGT	1 cut(s)	294
AgsI	TTSAA	2 cut(s)	466, 641
AjiI	CACGTC	1 cut(s)	297
AjnI	CCWGG	2 cut(s)	350, 867
AjuI	GAANNNNNNNTTGG	4 cut(s)	386, 418, 749, 781
AluBI	AGCT	8 cut(s)	17, 25, 235, 259, 455, 512, 657, 862
AluI	AGCT	8 cut(s)	17, 25, 235, 259, 455, 512, 657, 862
Alw26I	GTCTC	2 cut(s)	186, 843
AlwI	GGATC	2 cut(s)	72, 181
Ama87I	CYCGRG	1 cut(s)	236
AoxI	GGCC	4 cut(s)	40, 94, 319, 370
ApoI	RAATTY	1 cut(s)	394
AseI	ATTAAT	1 cut(s)	588
AspLEI	GCGC	2 cut(s)	357, 362
AspS9I	GGNCC	5 cut(s)	7, 41, 85, 370, 575
AsuC2I	CCSGG	1 cut(s)	98
AsuII	TTCGAA	1 cut(s)	168
AvaI	CYCGRG	1 cut(s)	236
AvaII	GGWCC	3 cut(s)	7, 85, 575
BbrPI	CACGTG	1 cut(s)	47
BccI	CCATC	2 cut(s)	131, 224
BceAI	ACGGC	3 cut(s)	235, 283, 334
BcgI	CGANNNNNNTGC	2 cut(s)	100, 134
BciT130I	CCWGG	2 cut(s)	352, 869
BcnI	CCSGG	1 cut(s)	98
BcoDI	GTCTC	2 cut(s)	186, 843
BfaI	CTAG	3 cut(s)	62, 456, 863
BisI	GCNGC	3 cut(s)	109, 358, 553
BlpI	GCTNAGC	1 cut(s)	858
BlsI	GCNGC	3 cut(s)	110, 359, 554
Bme1390I	CCNGG	3 cut(s)	98, 352, 869
Bme18I	GGWCC	3 cut(s)	7, 85, 575
BmeT110I	CYCGRG	1 cut(s)	236
BmgBI	CACGTC	1 cut(s)	297
BmgT120I	GGNCC	5 cut(s)	7, 41, 85, 370, 575
BmiI	GGNNCC	5 cut(s)	9, 214, 332, 577, 744
BmrFI	CCNGG	3 cut(s)	98, 352, 869
Bpu1102I	GCTNAGC	1 cut(s)	858
Bpu14I	TTCGAA	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	5
BpuMI	CCSGG	1 cut(s)	98
BsaAI	YACGTR	1 cut(s)	47
BsaI	GGTCTC	1 cut(s)	186
BsaJI	CCNNGG	3 cut(s)	81, 106, 350
BsaXI	ACNNNNNCTCC	4 cut(s)	185, 215, 281, 311
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 50, 356
Bse118I	RCCGGY	1 cut(s)	333
BseBI	CCWGG	2 cut(s)	352, 869
BseDI	CCNNGG	3 cut(s)	81, 106, 350
BseGI	GGATG	2 cut(s)	189, 610
BseLI	CCNNNNNNNGG	3 cut(s)	49, 50, 356
BseMII	CTCAG	1 cut(s)	388
BseRI	GAGGAG	1 cut(s)	193
BseX3I	CGGCCG	1 cut(s)	94
Bsh1236I	CGCG	3 cut(s)	108, 357, 362
Bsh1285I	CGRYCG	1 cut(s)	97
BshFI	GGCC	4 cut(s)	42, 96, 321, 372
BsiEI	CGRYCG	1 cut(s)	97
BsiHKCI	CYCGRG	1 cut(s)	236
BsiSI	CCGG	5 cut(s)	97, 135, 242, 334, 840
BslFI	GGGAC	1 cut(s)	561
BslI	CCNNNNNNNGG	3 cut(s)	49, 50, 356
BsmAI	GTCTC	2 cut(s)	186, 843
BsmFI	GGGAC	1 cut(s)	561
BsnI	GGCC	4 cut(s)	42, 96, 321, 372
Bso31I	GGTCTC	1 cut(s)	186
BsoBI	CYCGRG	1 cut(s)	236
Bsp119I	TTCGAA	1 cut(s)	168
Bsp143I	GATC	4 cut(s)	77, 186, 282, 300
Bsp1720I	GCTNAGC	1 cut(s)	858
BspACI	CCGC	5 cut(s)	106, 108, 357, 362, 553
BspANI	GGCC	4 cut(s)	42, 96, 321, 372
BspCNI	CTCAG	1 cut(s)	387
BspFNI	CGCG	3 cut(s)	108, 357, 362
BspLI	GGNNCC	5 cut(s)	9, 214, 332, 577, 744
BspPI	GGATC	2 cut(s)	72, 181
BspT104I	TTCGAA	1 cut(s)	168
BspTNI	GGTCTC	1 cut(s)	186
BsrBI	CCGCTC	1 cut(s)	555
BsrFI	RCCGGY	1 cut(s)	333
BssAI	RCCGGY	1 cut(s)	333
BssECI	CCNNGG	3 cut(s)	81, 106, 350
BssMI	GATC	4 cut(s)	77, 186, 282, 300
BssT1I	CCWWGG	1 cut(s)	81
Bst2UI	CCWGG	2 cut(s)	352, 869
Bst4CI	ACNGT	2 cut(s)	611, 908
Bst6I	CTCTTC	4 cut(s)	384, 440, 461, 523
BstAPI	GCANNNNNTGC	1 cut(s)	549
BstBAI	YACGTR	1 cut(s)	47
BstBI	TTCGAA	1 cut(s)	168
BstDEI	CTNAG	4 cut(s)	374, 668, 678, 858
BstDSI	CCRYGG	1 cut(s)	106
BstF5I	GGATG	2 cut(s)	189, 610
BstFNI	CGCG	3 cut(s)	108, 357, 362
BstHHI	GCGC	2 cut(s)	357, 362
BstKTI	GATC	4 cut(s)	80, 189, 285, 303
BstMAI	GTCTC	2 cut(s)	186, 843
BstMBI	GATC	4 cut(s)	77, 186, 282, 300
BstMCI	CGRYCG	1 cut(s)	97
BstMWI	GCNNNNNNNGC	4 cut(s)	31, 247, 256, 549
BstNI	CCWGG	2 cut(s)	352, 869
BstSCI	CCNGG	3 cut(s)	96, 350, 867
BstUI	CGCG	3 cut(s)	108, 357, 362
BstX2I	RGATCY	1 cut(s)	77
BstXI	CCANNNNNNTGG	1 cut(s)	505
BstYI	RGATCY	1 cut(s)	77
BstZI	CGGCCG	1 cut(s)	94
BsuRI	GGCC	4 cut(s)	42, 96, 321, 372
BtgI	CCRYGG	1 cut(s)	106
BtrI	CACGTC	1 cut(s)	297
BtsCI	GGATG	2 cut(s)	189, 610
CfoI	GCGC	2 cut(s)	357, 362
Cfr10I	RCCGGY	1 cut(s)	333
Cfr13I	GGNCC	5 cut(s)	7, 41, 85, 370, 575
Cfr42I	CCGCGG	1 cut(s)	109
Csp6I	GTAC	3 cut(s)	67, 292, 874
CviQI	GTAC	3 cut(s)	67, 292, 874
DdeI	CTNAG	4 cut(s)	374, 668, 678, 858
DpnI	GATC	4 cut(s)	79, 188, 284, 302
DpnII	GATC	4 cut(s)	77, 186, 282, 300
EaeI	YGGCCR	2 cut(s)	94, 319
EagI	CGGCCG	1 cut(s)	94
Eam1104I	CTCTTC	4 cut(s)	384, 440, 461, 523
EarI	CTCTTC	4 cut(s)	384, 440, 461, 523
EclXI	CGGCCG	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	81
Eco31I	GGTCTC	1 cut(s)	186
Eco47I	GGWCC	3 cut(s)	7, 85, 575
Eco52I	CGGCCG	1 cut(s)	94
Eco72I	CACGTG	1 cut(s)	47
Eco88I	CYCGRG	1 cut(s)	236
EcoO109I	RGGNCCY	1 cut(s)	370
EcoRI	GAATTC	1 cut(s)	394
EcoRII	CCWGG	2 cut(s)	350, 867
EcoT14I	CCWWGG	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	81
FaiI	YATR	4 cut(s)	278, 559, 786, 878
FaqI	GGGAC	1 cut(s)	561
Fnu4HI	GCNGC	3 cut(s)	109, 358, 553
FokI	GGATG	2 cut(s)	196, 617
Fsp4HI	GCNGC	3 cut(s)	109, 358, 553
FspBI	CTAG	3 cut(s)	62, 456, 863
GlaI	GCGC	2 cut(s)	356, 361
GluI	GCNGC	3 cut(s)	109, 358, 553
HaeIII	GGCC	4 cut(s)	42, 96, 321, 372
HapII	CCGG	5 cut(s)	97, 135, 242, 334, 840
HhaI	GCGC	2 cut(s)	357, 362
Hin6I	GCGC	2 cut(s)	355, 360
HinP1I	GCGC	2 cut(s)	355, 360
HinfI	GANTC	5 cut(s)	90, 131, 170, 200, 346
HpaII	CCGG	5 cut(s)	97, 135, 242, 334, 840
Hpy166II	GTNNAC	2 cut(s)	223, 294
Hpy188I	TCNGA	5 cut(s)	89, 191, 377, 400, 487
Hpy188III	TCNNGA	3 cut(s)	310, 498, 564
Hpy8I	GTNNAC	2 cut(s)	223, 294
Hpy99I	CGWCG	3 cut(s)	269, 275, 301
HpyAV	CCTTC	4 cut(s)	320, 336, 379, 886
HpyCH4III	ACNGT	2 cut(s)	611, 908
HpyCH4IV	ACGT	2 cut(s)	46, 296
HpyCH4V	TGCA	2 cut(s)	543, 790
HpyF10VI	GCNNNNNNNGC	4 cut(s)	31, 247, 256, 549
HpyF3I	CTNAG	4 cut(s)	374, 668, 678, 858
HpySE526I	ACGT	2 cut(s)	46, 296
HspAI	GCGC	2 cut(s)	355, 360
KspI	CCGCGG	1 cut(s)	109
Kzo9I	GATC	4 cut(s)	77, 186, 282, 300
LmnI	GCTCC	4 cut(s)	256, 330, 654, 742
MaeI	CTAG	3 cut(s)	62, 456, 863
MaeII	ACGT	2 cut(s)	46, 296
MaeIII	GTNAC	1 cut(s)	902
MalI	GATC	4 cut(s)	79, 188, 284, 302
MbiI	CCGCTC	1 cut(s)	555
MboI	GATC	4 cut(s)	77, 186, 282, 300
MboII	GAAGA	6 cut(s)	401, 457, 478, 540, 546, 769
MflI	RGATCY	1 cut(s)	77
MluCI	AATT	4 cut(s)	394, 401, 423, 570
MlyI	GAGTC	2 cut(s)	125, 194
MmeI	TCCRAC	4 cut(s)	231, 234, 465, 598
MseI	TTAA	4 cut(s)	588, 714, 813, 910
MspA1I	CMGCKG	1 cut(s)	108
MspI	CCGG	5 cut(s)	97, 135, 242, 334, 840
MspR9I	CCNGG	3 cut(s)	98, 352, 869
MteI	GCGCNGCGC	1 cut(s)	358
MvaI	CCWGG	2 cut(s)	352, 869
MvnI	CGCG	3 cut(s)	108, 357, 362
MwoI	GCNNNNNNNGC	4 cut(s)	31, 247, 256, 549
NciI	CCSGG	1 cut(s)	98
NdeII	GATC	4 cut(s)	77, 186, 282, 300
NlaIV	GGNNCC	5 cut(s)	9, 214, 332, 577, 744
NmuCI	GTSAC	1 cut(s)	902
NspV	TTCGAA	1 cut(s)	168
PaeR7I	CTCGAG	1 cut(s)	236
PcsI	WCGNNNNNNNCGW	3 cut(s)	99, 216, 270
PfeI	GAWTC	3 cut(s)	90, 170, 346
PfoI	TCCNGGA	1 cut(s)	867
PkrI	GCNGC	3 cut(s)	110, 359, 554
PleI	GAGTC	2 cut(s)	125, 194
PmaCI	CACGTG	1 cut(s)	47
PmlI	CACGTG	1 cut(s)	47
PpsI	GAGTC	2 cut(s)	125, 194
Ppu21I	YACGTR	1 cut(s)	47
PshBI	ATTAAT	1 cut(s)	588
Psp6I	CCWGG	2 cut(s)	350, 867
PspCI	CACGTG	1 cut(s)	47
PspGI	CCWGG	2 cut(s)	350, 867
PspN4I	GGNNCC	5 cut(s)	9, 214, 332, 577, 744
PspPI	GGNCC	5 cut(s)	7, 41, 85, 370, 575
PspXI	VCTCGAGB	1 cut(s)	236
PsuI	RGATCY	1 cut(s)	77
RsaI	GTAC	3 cut(s)	68, 293, 875
RsaNI	GTAC	3 cut(s)	67, 292, 874
SacII	CCGCGG	1 cut(s)	109
SaqAI	TTAA	4 cut(s)	588, 714, 813, 910
SatI	GCNGC	3 cut(s)	109, 358, 553
Sau3AI	GATC	4 cut(s)	77, 186, 282, 300
Sau96I	GGNCC	5 cut(s)	7, 41, 85, 370, 575
SchI	GAGTC	2 cut(s)	125, 194
ScrFI	CCNGG	3 cut(s)	98, 352, 869
Sfr274I	CTCGAG	1 cut(s)	236
Sfr303I	CCGCGG	1 cut(s)	109
SfuI	TTCGAA	1 cut(s)	168
SgrBI	CCGCGG	1 cut(s)	109
SinI	GGWCC	3 cut(s)	7, 85, 575
SlaI	CTCGAG	1 cut(s)	236
SmlI	CTYRAG	2 cut(s)	20, 236
SmoI	CTYRAG	2 cut(s)	20, 236
Sse9I	AATT	4 cut(s)	394, 401, 423, 570
SsiI	CCGC	5 cut(s)	106, 108, 357, 362, 553
SspMI	CTAG	3 cut(s)	62, 456, 863
StyD4I	CCNGG	3 cut(s)	96, 350, 867
StyI	CCWWGG	1 cut(s)	81
TaaI	ACNGT	2 cut(s)	611, 908
TaiI	ACGT	2 cut(s)	49, 299
TaqI	TCGA	6 cut(s)	27, 162, 168, 198, 237, 299
TasI	AATT	4 cut(s)	394, 401, 423, 570
TatI	WGTACW	2 cut(s)	291, 873
TauI	GCSGC	3 cut(s)	111, 360, 555
TfiI	GAWTC	3 cut(s)	90, 170, 346
Tru1I	TTAA	4 cut(s)	588, 714, 813, 910
Tru9I	TTAA	4 cut(s)	588, 714, 813, 910
TseFI	GTSAC	1 cut(s)	902
Tsp45I	GTSAC	1 cut(s)	902
TspGWI	ACGGA	2 cut(s)	225, 295
VpaK11BI	GGWCC	3 cut(s)	7, 85, 575
VspI	ATTAAT	1 cut(s)	588
XapI	RAATTY	1 cut(s)	394
XhoI	CTCGAG	1 cut(s)	236
XspI	CTAG	3 cut(s)	62, 456, 863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.