Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002999

Physical Location & Seq

Genomic Coordinates Reverse (-)

40704898 .. 40705877

Gene Structure 980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00247360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGTGGAGCCTTTAGCAGGTCTCAAGCTCGAAATGCTCAAAGGCCCCCGTGAGGGAGAAACCCTAGAGTACCGACCCAGATCCAAGGTCCGAATCGGCCGGGTCGTCCGCGGCAACAACCTCCCCATCAAAGACTCCGGCATTTCCACCAACCACCTCCTCATCGACTCCGACTCCGAATCGGGTAAATGGATGATCCGAGACCTCGACTCCTCCAACGGAACCGTCGTAAACGACACCAAGCTCAAGCCGCACACGCCGCTGGAGCTGAACGACGGCGACGAGATAAAGATCGGGGTGTACACGTCGATCTCCGTCAACATCGACGGCCACGAAGGCTGCAGGTTGAGAAGGAATCCGAGGCGCGGCGCGGCCGGGAAGGAGAAGAAGAAGAAGGAAGAGAATTCTGAATTGGAGAGAGAGGGCGAGGAAATTGAGGTGAGGGAGGATTTGGTGGAGGAGGTTGCTGTGGTTCCGGATTCGGAGACTTGCGTTGAACAAGTGAAGATTGAACCTAAGAGGCGTGGTGGGGGGAGGAAGAGGAAGAATGTGCCGCTCATGTGTGAGAAAGATAATGTTGTGGGAGAGAGTGGCAATGACAGTGACAAGGCAAAAGGGTCCAATTCGGGCCATGAAGAGGCAGCCACTGACTGTAATGTTGGAGTGGGTGGCGATAAGGTTGAAAGTGGTGCTAAGAATGTTGATAAAAAGGGGAATGGTTCTGGTGTTAAACAAGGTTTGGGAAAGATTTGGCAGGAGCCAGATTTGGAGAAGATGACTTTGGATGATTGGTTTGATTATGTGCAAGTTTCTTTGCCGAAAGGGGTTAATGATGAGATTGACAAGATTTGTGCCGGAATGAGACAGAAGGCTAAGCTAGTCCAGGAGCATATAGCACAACACAAGAAGGACAAGTGTCACAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

308

Amino Acids

34.0

Weight (kDa)

6.07

Isoelectric Point (pI)

35.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Yop-YscD_cpl	PF16697	11 - 100	4.4e-08	Inner membrane component of T3SS, cytoplasmic domain
FHA	PF00498	30 - 99	1.2e-17	FHA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14490
fragaria_vesca	FvH4_4g02980 FvH4_4g02980 FvH4_4g02980 FvH4_4g02980
malus_domestica	MD13G1205500.v1.1 MD16G1211500.v1.1
prunus_persica	Prupe.1G033600_v2.0.a1
pyrus_communis	pycom13g17820 pycom16g17730
rosa_chinensis	RchiOBHm_Chr4g0391131 RchiOBHm_Chr7g0211851 RchiOBHm_Chr7g0224291
rosa_laevigata	RLG00000009886
rosa_multiflora	Rmu_co8378449.1_g000001 Rmu_sc0001824.1_g000046 Rmu_sc0008872.1_g000006 Rmu_sc0009005.1_g000005 Rmu_sc0009448.1_g000001 Rmu_sc0028516.1_g000002 Rmu_sc0030074.1_g000001 Rmu_sc0032072.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247360 Rroxscaffold_5G00336920
rosa_rugosa	Rorug03G0334400
rosa_samantha	Rh4AG034800 Rh4BG030000 Rh4CG038600 Rh4DG032000 Rh4DG032700 Rh7AG262000 Rh7AG381100 Rh7BG255700 Rh7CG400500 Rh7DG268500 Rh7DG367500
rosa_wichuraiana	Rw4G002710 Rw7G031100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	8, 333
AccBSI	CCGCTC	1 cut(s)	556
AccII	CGCG	3 cut(s)	111, 366, 371
AccIII	TCCGGA	1 cut(s)	475
AciI	CCGC	7 cut(s)	109, 111, 251, 260, 366, 371, 554
AclWI	GGATC	2 cut(s)	75, 190
AcoI	YGGCCR	3 cut(s)	97, 328, 372
AcsI	RAATTY	1 cut(s)	403
AfaI	GTAC	2 cut(s)	71, 302
AfiI	CCNNNNNNNGG	5 cut(s)	17, 52, 53, 365, 637
AflIII	ACRYGT	1 cut(s)	303
AgsI	TTSAA	3 cut(s)	497, 512, 683
AjiI	CACGTC	1 cut(s)	306
AjnI	CCWGG	1 cut(s)	882
AjuI	GAANNNNNNNTTGG	4 cut(s)	395, 427, 764, 796
AluBI	AGCT	4 cut(s)	28, 244, 268, 877
AluI	AGCT	4 cut(s)	28, 244, 268, 877
Alw26I	GTCTC	4 cut(s)	26, 195, 479, 856
AlwI	GGATC	2 cut(s)	75, 190
AlwNI	CAGNNNCTG	1 cut(s)	647
Aor13HI	TCCGGA	1 cut(s)	475
AoxI	GGCC	5 cut(s)	43, 97, 328, 372, 628
ApeKI	GCWGC	2 cut(s)	339, 641
ApoI	RAATTY	1 cut(s)	403
AspLEI	GCGC	2 cut(s)	366, 371
AspS9I	GGNCC	4 cut(s)	44, 88, 618, 628
AsuC2I	CCSGG	2 cut(s)	101, 376
AsuHPI	GGTGA	1 cut(s)	451
AvaII	GGWCC	2 cut(s)	88, 618
BbvI	GCAGC	2 cut(s)	326, 653
BccI	CCATC	1 cut(s)	134
BceAI	ACGGC	2 cut(s)	292, 343
BciT130I	CCWGG	1 cut(s)	884
BcnI	CCSGG	2 cut(s)	101, 376
BcoDI	GTCTC	4 cut(s)	26, 195, 479, 856
BfaI	CTAG	2 cut(s)	65, 878
BfmI	CTRYAG	1 cut(s)	340
BfuAI	ACCTGC	2 cut(s)	8, 333
BglI	GCCNNNNNGGC	1 cut(s)	336
BisI	GCNGC	8 cut(s)	112, 251, 260, 340, 367, 372, 554, 642
BlpI	GCTNAGC	1 cut(s)	873
BlsI	GCNGC	8 cut(s)	113, 252, 261, 341, 368, 373, 555, 643
Bme1390I	CCNGG	3 cut(s)	101, 376, 884
Bme18I	GGWCC	2 cut(s)	88, 618
BmgBI	CACGTC	1 cut(s)	306
BmgT120I	GGNCC	4 cut(s)	44, 88, 618, 628
BmiI	GGNNCC	6 cut(s)	9, 46, 223, 474, 619, 759
BmrFI	CCNGG	3 cut(s)	101, 376, 884
BoxI	GACNNNNGTC	1 cut(s)	915
BpmI	CTGGAG	1 cut(s)	284
Bpu1102I	GCTNAGC	1 cut(s)	873
BpuEI	CTTGAG	2 cut(s)	8, 230
BpuMI	CCSGG	2 cut(s)	101, 376
BsaBI	GATNNNNATC	1 cut(s)	290
BsaI	GGTCTC	2 cut(s)	26, 195
BsaJI	CCNNGG	3 cut(s)	84, 109, 359
BsaWI	WCCGGW	1 cut(s)	475
BsaXI	ACNNNNNCTCC	4 cut(s)	158, 188, 194, 224
Bsc4I	CCNNNNNNNGG	5 cut(s)	17, 52, 53, 365, 637
Bse3DI	GCAATG	1 cut(s)	601
Bse8I	GATNNNNATC	1 cut(s)	290
BseAI	TCCGGA	1 cut(s)	475
BseBI	CCWGG	1 cut(s)	884
BseDI	CCNNGG	3 cut(s)	84, 109, 359
BseGI	GGATG	2 cut(s)	198, 790
BseJI	GATNNNNATC	1 cut(s)	290
BseLI	CCNNNNNNNGG	5 cut(s)	17, 52, 53, 365, 637
BseMI	GCAATG	1 cut(s)	601
BseRI	GAGGAG	3 cut(s)	149, 202, 473
BseX3I	CGGCCG	2 cut(s)	97, 372
BseXI	GCAGC	2 cut(s)	326, 653
Bsh1236I	CGCG	3 cut(s)	111, 366, 371
Bsh1285I	CGRYCG	2 cut(s)	100, 375
BshFI	GGCC	5 cut(s)	45, 99, 330, 374, 630
BsiEI	CGRYCG	2 cut(s)	100, 375
BsiSI	CCGG	5 cut(s)	100, 138, 375, 476, 855
BslI	CCNNNNNNNGG	5 cut(s)	17, 52, 53, 365, 637
BsmAI	GTCTC	4 cut(s)	26, 195, 479, 856
BsnI	GGCC	5 cut(s)	45, 99, 330, 374, 630
Bso31I	GGTCTC	2 cut(s)	26, 195
Bsp13I	TCCGGA	1 cut(s)	475
Bsp1407I	TGTACA	1 cut(s)	300
Bsp143I	GATC	4 cut(s)	80, 195, 291, 309
Bsp1720I	GCTNAGC	1 cut(s)	873
BspACI	CCGC	7 cut(s)	109, 111, 251, 260, 366, 371, 554
BspANI	GGCC	5 cut(s)	45, 99, 330, 374, 630
BspEI	TCCGGA	1 cut(s)	475
BspFNI	CGCG	3 cut(s)	111, 366, 371
BspLI	GGNNCC	6 cut(s)	9, 46, 223, 474, 619, 759
BspMAI	CTGCAG	1 cut(s)	344
BspMI	ACCTGC	2 cut(s)	8, 333
BspPI	GGATC	2 cut(s)	75, 190
BspTNI	GGTCTC	2 cut(s)	26, 195
BsrBI	CCGCTC	1 cut(s)	556
BsrDI	GCAATG	1 cut(s)	601
BsrGI	TGTACA	1 cut(s)	300
BssECI	CCNNGG	3 cut(s)	84, 109, 359
BssMI	GATC	4 cut(s)	80, 195, 291, 309
BssT1I	CCWWGG	1 cut(s)	84
Bst2UI	CCWGG	1 cut(s)	884
Bst4CI	ACNGT	4 cut(s)	226, 602, 653, 923
Bst6I	CTCTTC	3 cut(s)	393, 533, 630
BstAUI	TGTACA	1 cut(s)	300
BstDEI	CTNAG	3 cut(s)	516, 693, 873
BstDSI	CCRYGG	1 cut(s)	109
BstENI	CCTNNNNNAGG	1 cut(s)	15
BstF5I	GGATG	2 cut(s)	198, 790
BstFNI	CGCG	3 cut(s)	111, 366, 371
BstHHI	GCGC	2 cut(s)	366, 371
BstKTI	GATC	4 cut(s)	83, 198, 294, 312
BstMAI	GTCTC	4 cut(s)	26, 195, 479, 856
BstMBI	GATC	4 cut(s)	80, 195, 291, 309
BstMCI	CGRYCG	2 cut(s)	100, 375
BstMWI	GCNNNNNNNGC	6 cut(s)	34, 250, 256, 259, 265, 336
BstNI	CCWGG	1 cut(s)	884
BstPAI	GACNNNNGTC	1 cut(s)	915
BstSCI	CCNGG	3 cut(s)	99, 374, 882
BstSFI	CTRYAG	1 cut(s)	340
BstUI	CGCG	3 cut(s)	111, 366, 371
BstV1I	GCAGC	2 cut(s)	326, 653
BstX2I	RGATCY	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	80
BstZI	CGGCCG	2 cut(s)	97, 372
BsuRI	GGCC	5 cut(s)	45, 99, 330, 374, 630
BtgI	CCRYGG	1 cut(s)	109
BtrI	CACGTC	1 cut(s)	306
BtsCI	GGATG	2 cut(s)	198, 790
BtsIMutI	CAGTG	2 cut(s)	607, 645
BveI	ACCTGC	2 cut(s)	8, 333
CaiI	CAGNNNCTG	1 cut(s)	647
CfoI	GCGC	2 cut(s)	366, 371
Cfr13I	GGNCC	4 cut(s)	44, 88, 618, 628
Cfr42I	CCGCGG	1 cut(s)	112
Csp6I	GTAC	2 cut(s)	70, 301
CviAII	CATG	2 cut(s)	559, 632
CviQI	GTAC	2 cut(s)	70, 301
DdeI	CTNAG	3 cut(s)	516, 693, 873
DpnI	GATC	4 cut(s)	82, 197, 293, 311
DpnII	GATC	4 cut(s)	80, 195, 291, 309
EaeI	YGGCCR	3 cut(s)	97, 328, 372
EagI	CGGCCG	2 cut(s)	97, 372
Eam1104I	CTCTTC	3 cut(s)	393, 533, 630
EarI	CTCTTC	3 cut(s)	393, 533, 630
EclXI	CGGCCG	2 cut(s)	97, 372
Eco130I	CCWWGG	1 cut(s)	84
Eco31I	GGTCTC	2 cut(s)	26, 195
Eco47I	GGWCC	2 cut(s)	88, 618
Eco52I	CGGCCG	2 cut(s)	97, 372
EcoNI	CCTNNNNNAGG	1 cut(s)	15
EcoO109I	RGGNCCY	1 cut(s)	44
EcoRI	GAATTC	1 cut(s)	403
EcoRII	CCWGG	1 cut(s)	882
EcoT14I	CCWWGG	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	84
FaeI	CATG	2 cut(s)	562, 635
FaiI	YATR	5 cut(s)	560, 633, 801, 891, 893
FatI	CATG	2 cut(s)	558, 631
Fnu4HI	GCNGC	8 cut(s)	112, 251, 260, 340, 367, 372, 554, 642
FokI	GGATG	2 cut(s)	205, 797
Fsp4HI	GCNGC	8 cut(s)	112, 251, 260, 340, 367, 372, 554, 642
FspBI	CTAG	2 cut(s)	65, 878
GlaI	GCGC	2 cut(s)	365, 370
GluI	GCNGC	8 cut(s)	112, 251, 260, 340, 367, 372, 554, 642
GsuI	CTGGAG	1 cut(s)	284
HaeIII	GGCC	5 cut(s)	45, 99, 330, 374, 630
HapII	CCGG	5 cut(s)	100, 138, 375, 476, 855
HhaI	GCGC	2 cut(s)	366, 371
Hin1II	CATG	2 cut(s)	562, 635
Hin6I	GCGC	2 cut(s)	364, 369
HinP1I	GCGC	2 cut(s)	364, 369
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HinfI	GANTC	8 cut(s)	93, 134, 167, 173, 179, 209, 355, 479
HpaII	CCGG	5 cut(s)	100, 138, 375, 476, 855
HphI	GGTGA	1 cut(s)	451
Hpy166II	GTNNAC	4 cut(s)	232, 301, 303, 319
Hpy188I	TCNGA	7 cut(s)	92, 172, 178, 200, 360, 409, 484
Hpy188III	TCNNGA	1 cut(s)	476
Hpy8I	GTNNAC	4 cut(s)	232, 301, 303, 319
Hpy99I	CGWCG	5 cut(s)	230, 278, 284, 310, 329
HpyAV	CCTTC	6 cut(s)	329, 345, 373, 388, 862, 901
HpyCH4III	ACNGT	4 cut(s)	226, 602, 653, 923
HpyCH4IV	ACGT	1 cut(s)	305
HpyCH4V	TGCA	2 cut(s)	342, 805
HpyF10VI	GCNNNNNNNGC	6 cut(s)	34, 250, 256, 259, 265, 336
HpyF3I	CTNAG	3 cut(s)	516, 693, 873
HpySE526I	ACGT	1 cut(s)	305
Hsp92II	CATG	2 cut(s)	562, 635
HspAI	GCGC	2 cut(s)	364, 369
Kpn2I	TCCGGA	1 cut(s)	475
KspI	CCGCGG	1 cut(s)	112
Kzo9I	GATC	4 cut(s)	80, 195, 291, 309
LmnI	GCTCC	4 cut(s)	7, 265, 757, 886
Lsp1109I	GCAGC	2 cut(s)	326, 653
MaeI	CTAG	2 cut(s)	65, 878
MaeII	ACGT	1 cut(s)	305
MaeIII	GTNAC	2 cut(s)	602, 917
MalI	GATC	4 cut(s)	82, 197, 293, 311
MbiI	CCGCTC	1 cut(s)	556
MboI	GATC	4 cut(s)	80, 195, 291, 309
MboII	GAAGA	9 cut(s)	397, 400, 403, 410, 517, 550, 556, 647, 784
MflI	RGATCY	1 cut(s)	80
MluCI	AATT	4 cut(s)	403, 410, 432, 622
MlyI	GAGTC	4 cut(s)	128, 161, 167, 203
MmeI	TCCRAC	3 cut(s)	195, 240, 640
MroI	TCCGGA	1 cut(s)	475
MseI	TTAA	3 cut(s)	729, 828, 925
MspA1I	CMGCKG	2 cut(s)	111, 262
MspI	CCGG	5 cut(s)	100, 138, 375, 476, 855
MspR9I	CCNGG	3 cut(s)	101, 376, 884
MteI	GCGCNGCGC	1 cut(s)	367
MvaI	CCWGG	1 cut(s)	884
MvnI	CGCG	3 cut(s)	111, 366, 371
MwoI	GCNNNNNNNGC	6 cut(s)	34, 250, 256, 259, 265, 336
NciI	CCSGG	2 cut(s)	101, 376
NdeII	GATC	4 cut(s)	80, 195, 291, 309
NlaIII	CATG	2 cut(s)	562, 635
NlaIV	GGNNCC	6 cut(s)	9, 46, 223, 474, 619, 759
NmuCI	GTSAC	2 cut(s)	602, 917
PcsI	WCGNNNNNNNCGW	4 cut(s)	102, 225, 279, 330
PfeI	GAWTC	4 cut(s)	93, 179, 355, 479
PfoI	TCCNGGA	1 cut(s)	882
PkrI	GCNGC	8 cut(s)	113, 252, 261, 341, 368, 373, 555, 643
PleI	GAGTC	4 cut(s)	128, 161, 167, 203
PpsI	GAGTC	4 cut(s)	128, 161, 167, 203
PshAI	GACNNNNGTC	1 cut(s)	915
Psp6I	CCWGG	1 cut(s)	882
PspGI	CCWGG	1 cut(s)	882
PspN4I	GGNNCC	6 cut(s)	9, 46, 223, 474, 619, 759
PspPI	GGNCC	4 cut(s)	44, 88, 618, 628
PstI	CTGCAG	1 cut(s)	344
PstNI	CAGNNNCTG	1 cut(s)	647
PsuI	RGATCY	1 cut(s)	80
RsaI	GTAC	2 cut(s)	71, 302
RsaNI	GTAC	2 cut(s)	70, 301
SacII	CCGCGG	1 cut(s)	112
SaqAI	TTAA	3 cut(s)	729, 828, 925
SatI	GCNGC	8 cut(s)	112, 251, 260, 340, 367, 372, 554, 642
Sau3AI	GATC	4 cut(s)	80, 195, 291, 309
Sau96I	GGNCC	4 cut(s)	44, 88, 618, 628
SchI	GAGTC	4 cut(s)	128, 161, 167, 203
ScrFI	CCNGG	3 cut(s)	101, 376, 884
SfcI	CTRYAG	1 cut(s)	340
Sfr303I	CCGCGG	1 cut(s)	112
SgrBI	CCGCGG	1 cut(s)	112
SinI	GGWCC	2 cut(s)	88, 618
SmlI	CTYRAG	2 cut(s)	23, 245
SmoI	CTYRAG	2 cut(s)	23, 245
Sse9I	AATT	4 cut(s)	403, 410, 432, 622
SsiI	CCGC	7 cut(s)	109, 111, 251, 260, 366, 371, 554
SspMI	CTAG	2 cut(s)	65, 878
StyD4I	CCNGG	3 cut(s)	99, 374, 882
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	4 cut(s)	226, 602, 653, 923
TaiI	ACGT	1 cut(s)	308
TaqI	TCGA	5 cut(s)	30, 165, 207, 308, 324
TasI	AATT	4 cut(s)	403, 410, 432, 622
TatI	WGTACW	1 cut(s)	300
TauI	GCSGC	6 cut(s)	114, 253, 262, 369, 374, 556
TfiI	GAWTC	4 cut(s)	93, 179, 355, 479
Tru1I	TTAA	3 cut(s)	729, 828, 925
Tru9I	TTAA	3 cut(s)	729, 828, 925
TscAI	CASTG	2 cut(s)	607, 652
TseFI	GTSAC	2 cut(s)	602, 917
TseI	GCWGC	2 cut(s)	339, 641
Tsp45I	GTSAC	2 cut(s)	602, 917
TspDTI	ATGAA	1 cut(s)	648
TspGWI	ACGGA	2 cut(s)	234, 304
TspRI	CASTG	2 cut(s)	607, 652
VpaK11BI	GGWCC	2 cut(s)	88, 618
XagI	CCTNNNNNAGG	1 cut(s)	15
XapI	RAATTY	1 cut(s)	403
XspI	CTAG	2 cut(s)	65, 878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.