Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002999

Physical Location & Seq

Genomic Coordinates Forward (+)

26814392 .. 26814745

Gene Structure 354 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG262000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGCTCAAAGGCCCCCGTGAGGGAGAAACCCTAGAGTACCGACCCAGATCCAAGGTCCGAATCGGCCGGGTCGTCCGCGGCAACAACCTCGCCATCAAAGACTCCGGCATTTCCACCAACCACCTCATCATCCACTCCGACTCCGAATCTGGTAAATGGATGATCCGAGACCTCGACTCCTCCAACGGAACCGTCGTAAACGACACCAAGCTCAAGCCGGACACGCCGCTGGAGCTGAACGACGGCGACGAGATCAAGATCGGGGAGTACACGTCGATCGACGGCCACAGGGAAAGAAGGAATCCGAGGCGCGATTTGGCAGGAGCCAGATTTGGAGAAGATGACTTTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

117

Amino Acids

13.13

Weight (kDa)

6.3

Isoelectric Point (pI)

18.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Yop-YscD_cpl	PF16697	2 - 89	8.6e-10	Inner membrane component of T3SS, cytoplasmic domain
FHA	PF00498	19 - 88	8.1e-19	FHA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14490
fragaria_vesca	FvH4_4g02980 FvH4_4g02980 FvH4_4g02980 FvH4_4g02980
malus_domestica	MD13G1205500.v1.1 MD16G1211500.v1.1
prunus_persica	Prupe.1G033600_v2.0.a1
pyrus_communis	pycom13g17820 pycom16g17730
rosa_chinensis	RchiOBHm_Chr4g0391131 RchiOBHm_Chr7g0211851 RchiOBHm_Chr7g0224291
rosa_laevigata	RLG00000009886
rosa_multiflora	Rmu_co8378449.1_g000001 Rmu_sc0001824.1_g000046 Rmu_sc0008872.1_g000006 Rmu_sc0009005.1_g000005 Rmu_sc0009448.1_g000001 Rmu_sc0028516.1_g000002 Rmu_sc0030074.1_g000001 Rmu_sc0032072.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247360 Rroxscaffold_5G00336920
rosa_rugosa	Rorug03G0334400
rosa_samantha	Rh4AG034800 Rh4BG030000 Rh4CG038600 Rh4DG032000 Rh4DG032700 Rh7AG262000 Rh7AG381100 Rh7BG255700 Rh7CG400500 Rh7DG268500 Rh7DG367500
rosa_wichuraiana	Rw4G002710 Rw7G031100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	78, 312
AciI	CCGC	3 cut(s)	76, 78, 227
AclWI	GGATC	2 cut(s)	42, 157
AcoI	YGGCCR	2 cut(s)	64, 283
AfaI	GTAC	2 cut(s)	38, 269
AfiI	CCNNNNNNNGG	2 cut(s)	19, 20
AflIII	ACRYGT	1 cut(s)	270
AjiI	CACGTC	1 cut(s)	273
AjuI	GAANNNNNNNTTGG	1 cut(s)	330
AluBI	AGCT	2 cut(s)	211, 235
AluI	AGCT	2 cut(s)	211, 235
Alw26I	GTCTC	1 cut(s)	162
AlwI	GGATC	2 cut(s)	42, 157
AoxI	GGCC	3 cut(s)	10, 64, 283
AspLEI	GCGC	1 cut(s)	312
AspS9I	GGNCC	2 cut(s)	11, 55
AsuC2I	CCSGG	1 cut(s)	68
AvaII	GGWCC	1 cut(s)	55
BccI	CCATC	1 cut(s)	101
BceAI	ACGGC	2 cut(s)	259, 298
BcgI	CGANNNNNNTGC	2 cut(s)	70, 104
BcnI	CCSGG	1 cut(s)	68
BcoDI	GTCTC	1 cut(s)	162
BfaI	CTAG	1 cut(s)	32
BisI	GCNGC	2 cut(s)	79, 227
BlsI	GCNGC	2 cut(s)	80, 228
Bme1390I	CCNGG	1 cut(s)	68
Bme18I	GGWCC	1 cut(s)	55
BmgBI	CACGTC	1 cut(s)	273
BmgT120I	GGNCC	2 cut(s)	11, 55
BmiI	GGNNCC	3 cut(s)	13, 190, 325
BmrFI	CCNGG	1 cut(s)	68
BpmI	CTGGAG	1 cut(s)	251
BpuEI	CTTGAG	1 cut(s)	197
BpuMI	CCSGG	1 cut(s)	68
BsaBI	GATNNNNATC	1 cut(s)	257
BsaI	GGTCTC	1 cut(s)	162
BsaJI	CCNNGG	3 cut(s)	51, 76, 305
BsaXI	ACNNNNNCTCC	6 cut(s)	125, 155, 161, 191, 257, 287
Bsc4I	CCNNNNNNNGG	2 cut(s)	19, 20
Bse8I	GATNNNNATC	1 cut(s)	257
BseDI	CCNNGG	3 cut(s)	51, 76, 305
BseGI	GGATG	2 cut(s)	129, 165
BseJI	GATNNNNATC	1 cut(s)	257
BseLI	CCNNNNNNNGG	2 cut(s)	19, 20
BseRI	GAGGAG	1 cut(s)	169
BseX3I	CGGCCG	1 cut(s)	64
Bsh1236I	CGCG	2 cut(s)	78, 312
Bsh1285I	CGRYCG	2 cut(s)	67, 279
BshFI	GGCC	3 cut(s)	12, 66, 285
BsiEI	CGRYCG	2 cut(s)	67, 279
BsiSI	CCGG	3 cut(s)	67, 105, 218
BslI	CCNNNNNNNGG	2 cut(s)	19, 20
BsmAI	GTCTC	1 cut(s)	162
BsnI	GGCC	3 cut(s)	12, 66, 285
Bso31I	GGTCTC	1 cut(s)	162
Bsp143I	GATC	5 cut(s)	47, 162, 252, 258, 276
BspACI	CCGC	3 cut(s)	76, 78, 227
BspANI	GGCC	3 cut(s)	12, 66, 285
BspFNI	CGCG	2 cut(s)	78, 312
BspLI	GGNNCC	3 cut(s)	13, 190, 325
BspPI	GGATC	2 cut(s)	42, 157
BspTNI	GGTCTC	1 cut(s)	162
BssECI	CCNNGG	3 cut(s)	51, 76, 305
BssMI	GATC	5 cut(s)	47, 162, 252, 258, 276
BssT1I	CCWWGG	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	193
BstDSI	CCRYGG	1 cut(s)	76
BstF5I	GGATG	2 cut(s)	129, 165
BstFNI	CGCG	2 cut(s)	78, 312
BstHHI	GCGC	1 cut(s)	312
BstKTI	GATC	5 cut(s)	50, 165, 255, 261, 279
BstMAI	GTCTC	1 cut(s)	162
BstMBI	GATC	5 cut(s)	47, 162, 252, 258, 276
BstMCI	CGRYCG	2 cut(s)	67, 279
BstMWI	GCNNNNNNNGC	2 cut(s)	223, 232
BstSCI	CCNGG	1 cut(s)	66
BstUI	CGCG	2 cut(s)	78, 312
BstX2I	RGATCY	1 cut(s)	47
BstYI	RGATCY	1 cut(s)	47
BstZI	CGGCCG	1 cut(s)	64
BsuRI	GGCC	3 cut(s)	12, 66, 285
BtgI	CCRYGG	1 cut(s)	76
BtrI	CACGTC	1 cut(s)	273
BtsCI	GGATG	2 cut(s)	129, 165
CfoI	GCGC	1 cut(s)	312
Cfr13I	GGNCC	2 cut(s)	11, 55
Cfr42I	CCGCGG	1 cut(s)	79
Csp6I	GTAC	2 cut(s)	37, 268
CviJI	RGCY	7 cut(s)	12, 66, 211, 217, 235, 285, 326
CviKI_1	RGCY	7 cut(s)	12, 66, 211, 217, 235, 285, 326
CviQI	GTAC	2 cut(s)	37, 268
DpnI	GATC	5 cut(s)	49, 164, 254, 260, 278
DpnII	GATC	5 cut(s)	47, 162, 252, 258, 276
EaeI	YGGCCR	2 cut(s)	64, 283
EagI	CGGCCG	1 cut(s)	64
EclXI	CGGCCG	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	51
Eco31I	GGTCTC	1 cut(s)	162
Eco47I	GGWCC	1 cut(s)	55
Eco52I	CGGCCG	1 cut(s)	64
EcoO109I	RGGNCCY	1 cut(s)	11
EcoT14I	CCWWGG	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	51
Fnu4HI	GCNGC	2 cut(s)	79, 227
FokI	GGATG	2 cut(s)	116, 172
Fsp4HI	GCNGC	2 cut(s)	79, 227
FspBI	CTAG	1 cut(s)	32
GlaI	GCGC	1 cut(s)	311
GluI	GCNGC	2 cut(s)	79, 227
GsuI	CTGGAG	1 cut(s)	251
HaeIII	GGCC	3 cut(s)	12, 66, 285
HapII	CCGG	3 cut(s)	67, 105, 218
HhaI	GCGC	1 cut(s)	312
Hin6I	GCGC	1 cut(s)	310
HinP1I	GCGC	1 cut(s)	310
HinfI	GANTC	6 cut(s)	60, 101, 140, 146, 176, 301
HpaII	CCGG	3 cut(s)	67, 105, 218
Hpy166II	GTNNAC	2 cut(s)	199, 270
Hpy188I	TCNGA	5 cut(s)	59, 139, 145, 167, 306
Hpy188III	TCNNGA	1 cut(s)	256
Hpy8I	GTNNAC	2 cut(s)	199, 270
Hpy99I	CGWCG	5 cut(s)	197, 245, 251, 277, 284
HpyAV	CCTTC	1 cut(s)	291
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4IV	ACGT	1 cut(s)	272
HpyF10VI	GCNNNNNNNGC	2 cut(s)	223, 232
HpySE526I	ACGT	1 cut(s)	272
HspAI	GCGC	1 cut(s)	310
KspI	CCGCGG	1 cut(s)	79
Kzo9I	GATC	5 cut(s)	47, 162, 252, 258, 276
LmnI	GCTCC	2 cut(s)	232, 323
LpnPI	CCDG	9 cut(s)	58, 80, 118, 135, 215, 231, 274, 306, 340
MaeI	CTAG	1 cut(s)	32
MaeII	ACGT	1 cut(s)	272
MalI	GATC	5 cut(s)	49, 164, 254, 260, 278
MboI	GATC	5 cut(s)	47, 162, 252, 258, 276
MboII	GAAGA	1 cut(s)	350
MflI	RGATCY	1 cut(s)	47
MlyI	GAGTC	3 cut(s)	95, 134, 170
MmeI	TCCRAC	2 cut(s)	162, 207
MnlI	CCTC	6 cut(s)	13, 98, 134, 182, 190, 300
MspA1I	CMGCKG	2 cut(s)	78, 229
MspI	CCGG	3 cut(s)	67, 105, 218
MspR9I	CCNGG	1 cut(s)	68
MvnI	CGCG	2 cut(s)	78, 312
MwoI	GCNNNNNNNGC	2 cut(s)	223, 232
NciI	CCSGG	1 cut(s)	68
NdeII	GATC	5 cut(s)	47, 162, 252, 258, 276
NlaIV	GGNNCC	3 cut(s)	13, 190, 325
PcsI	WCGNNNNNNNCGW	3 cut(s)	69, 192, 246
PfeI	GAWTC	3 cut(s)	60, 146, 301
PkrI	GCNGC	2 cut(s)	80, 228
Ple19I	CGATCG	1 cut(s)	279
PleI	GAGTC	3 cut(s)	95, 134, 170
PpsI	GAGTC	3 cut(s)	95, 134, 170
PspN4I	GGNNCC	3 cut(s)	13, 190, 325
PspPI	GGNCC	2 cut(s)	11, 55
PsuI	RGATCY	1 cut(s)	47
PvuI	CGATCG	1 cut(s)	279
RsaI	GTAC	2 cut(s)	38, 269
RsaNI	GTAC	2 cut(s)	37, 268
SacII	CCGCGG	1 cut(s)	79
SatI	GCNGC	2 cut(s)	79, 227
Sau3AI	GATC	5 cut(s)	47, 162, 252, 258, 276
Sau96I	GGNCC	2 cut(s)	11, 55
SchI	GAGTC	3 cut(s)	95, 134, 170
ScrFI	CCNGG	1 cut(s)	68
SetI	ASST	7 cut(s)	57, 90, 126, 174, 213, 237, 275
Sfr303I	CCGCGG	1 cut(s)	79
SgrBI	CCGCGG	1 cut(s)	79
SinI	GGWCC	1 cut(s)	55
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
SsiI	CCGC	3 cut(s)	76, 78, 227
SspMI	CTAG	1 cut(s)	32
StyD4I	CCNGG	1 cut(s)	66
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	1 cut(s)	193
TaiI	ACGT	1 cut(s)	275
TaqI	TCGA	3 cut(s)	174, 275, 279
TatI	WGTACW	1 cut(s)	267
TauI	GCSGC	2 cut(s)	81, 229
TfiI	GAWTC	3 cut(s)	60, 146, 301
TspGWI	ACGGA	1 cut(s)	201
VpaK11BI	GGWCC	1 cut(s)	55
XspI	CTAG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.