FHA domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G14490 |
| fragaria_vesca | FvH4_4g02980 FvH4_4g02980 FvH4_4g02980 FvH4_4g02980 |
| malus_domestica | MD13G1205500.v1.1 MD16G1211500.v1.1 |
| prunus_persica | Prupe.1G033600_v2.0.a1 |
| pyrus_communis | pycom13g17820 pycom16g17730 |
| rosa_chinensis | RchiOBHm_Chr4g0391131 RchiOBHm_Chr7g0211851 RchiOBHm_Chr7g0224291 |
| rosa_laevigata | RLG00000009886 |
| rosa_multiflora | Rmu_co8378449.1_g000001 Rmu_sc0001824.1_g000046 Rmu_sc0008872.1_g000006 Rmu_sc0009005.1_g000005 Rmu_sc0009448.1_g000001 Rmu_sc0028516.1_g000002 Rmu_sc0030074.1_g000001 Rmu_sc0032072.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00247360 Rroxscaffold_5G00336920 |
| rosa_rugosa | Rorug03G0334400 |
| rosa_samantha | Rh4AG034800 Rh4BG030000 Rh4CG038600 Rh4DG032000 Rh4DG032700 Rh7AG262000 Rh7AG381100 Rh7BG255700 Rh7CG400500 Rh7DG268500 Rh7DG367500 |
| rosa_wichuraiana | Rw4G002710 Rw7G031100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 227 |
| AccII | CGCG | 4 cut(s) | 105, 357, 362, 700 |
| AccIII | TCCGGA | 3 cut(s) | 601, 796, 1208 |
| AclWI | GGATC | 3 cut(s) | 69, 82, 181 |
| AcoI | YGGCCR | 1 cut(s) | 491 |
| AcsI | RAATTY | 3 cut(s) | 424, 736, 877 |
| AfaI | GTAC | 2 cut(s) | 65, 293 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 46, 47, 328, 356, 479, 970 |
| AflIII | ACRYGT | 1 cut(s) | 294 |
| AgsI | TTSAA | 3 cut(s) | 514, 647, 877 |
| AjiI | CACGTC | 1 cut(s) | 297 |
| AjnI | CCWGG | 1 cut(s) | 1236 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 416, 448, 1009, 1041, 1118, 1150 |
| AluBI | AGCT | 6 cut(s) | 22, 235, 259, 503, 593, 1231 |
| AluI | AGCT | 6 cut(s) | 22, 235, 259, 503, 593, 1231 |
| Alw26I | GTCTC | 2 cut(s) | 47, 186 |
| AlwI | GGATC | 3 cut(s) | 69, 82, 181 |
| Ama87I | CYCGRG | 2 cut(s) | 23, 42 |
| Aor13HI | TCCGGA | 3 cut(s) | 601, 796, 1208 |
| AoxI | GGCC | 7 cut(s) | 37, 319, 397, 481, 487, 491, 961 |
| ApeKI | GCWGC | 2 cut(s) | 896, 974 |
| ApoI | RAATTY | 3 cut(s) | 424, 736, 877 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1130, 1162 |
| AspLEI | GCGC | 2 cut(s) | 357, 362 |
| AspS9I | GGNCC | 9 cut(s) | 38, 82, 397, 481, 487, 752, 824, 951, 961 |
| AsuC2I | CCSGG | 5 cut(s) | 43, 44, 72, 485, 495 |
| AsuHPI | GGTGA | 1 cut(s) | 782 |
| AvaI | CYCGRG | 2 cut(s) | 23, 42 |
| AvaII | GGWCC | 4 cut(s) | 82, 752, 824, 951 |
| BamHI | GGATCC | 1 cut(s) | 74 |
| BanI | GGYRCC | 1 cut(s) | 227 |
| BbvI | GCAGC | 2 cut(s) | 908, 986 |
| BccI | CCATC | 3 cut(s) | 128, 224, 308 |
| BceAI | ACGGC | 3 cut(s) | 235, 241, 283 |
| BciT130I | CCWGG | 1 cut(s) | 1238 |
| BcnI | CCSGG | 5 cut(s) | 43, 44, 72, 485, 495 |
| BcoDI | GTCTC | 2 cut(s) | 47, 186 |
| BfaI | CTAG | 3 cut(s) | 59, 504, 1232 |
| BisI | GCNGC | 7 cut(s) | 106, 358, 363, 698, 726, 897, 975 |
| BlpI | GCTNAGC | 2 cut(s) | 260, 1227 |
| BlsI | GCNGC | 7 cut(s) | 107, 359, 364, 699, 727, 898, 976 |
| Bme1390I | CCNGG | 6 cut(s) | 43, 44, 72, 485, 495, 1238 |
| Bme18I | GGWCC | 4 cut(s) | 82, 752, 824, 951 |
| BmeT110I | CYCGRG | 2 cut(s) | 23, 42 |
| BmgBI | CACGTC | 1 cut(s) | 297 |
| BmgT120I | GGNCC | 9 cut(s) | 38, 82, 397, 481, 487, 752, 824, 951, 961 |
| BmrFI | CCNGG | 6 cut(s) | 43, 44, 72, 485, 495, 1238 |
| BmsI | GCATC | 2 cut(s) | 18, 853 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 553, 585 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1053 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 260, 1227 |
| BpuEI | CTTGAG | 1 cut(s) | 221 |
| BpuMI | CCSGG | 5 cut(s) | 43, 44, 72, 485, 495 |
| BsaBI | GATNNNNATC | 1 cut(s) | 281 |
| BsaI | GGTCTC | 2 cut(s) | 47, 186 |
| BsaJI | CCNNGG | 8 cut(s) | 41, 42, 78, 103, 350, 484, 494, 698 |
| BsaWI | WCCGGW | 3 cut(s) | 601, 796, 1208 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 185, 215, 281, 311 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 46, 47, 328, 356, 479, 970 |
| Bse118I | RCCGGY | 1 cut(s) | 489 |
| Bse1I | ACTGG | 2 cut(s) | 755, 827 |
| Bse3DI | GCAATG | 1 cut(s) | 934 |
| Bse8I | GATNNNNATC | 1 cut(s) | 281 |
| BseAI | TCCGGA | 3 cut(s) | 601, 796, 1208 |
| BseBI | CCWGG | 1 cut(s) | 1238 |
| BseDI | CCNNGG | 8 cut(s) | 41, 42, 78, 103, 350, 484, 494, 698 |
| BseGI | GGATG | 5 cut(s) | 189, 589, 796, 892, 1063 |
| BseJI | GATNNNNATC | 1 cut(s) | 281 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 46, 47, 328, 356, 479, 970 |
| BseMI | GCAATG | 1 cut(s) | 934 |
| BseMII | CTCAG | 1 cut(s) | 251 |
| BseNI | ACTGG | 2 cut(s) | 755, 827 |
| BseRI | GAGGAG | 3 cut(s) | 193, 401, 548 |
| BseX3I | CGGCCG | 1 cut(s) | 491 |
| BseXI | GCAGC | 2 cut(s) | 908, 986 |
| Bsh1236I | CGCG | 4 cut(s) | 105, 357, 362, 700 |
| Bsh1285I | CGRYCG | 2 cut(s) | 94, 494 |
| BshFI | GGCC | 7 cut(s) | 39, 321, 399, 483, 489, 493, 963 |
| BshNI | GGYRCC | 1 cut(s) | 227 |
| BsiEI | CGRYCG | 2 cut(s) | 94, 494 |
| BsiHKCI | CYCGRG | 2 cut(s) | 23, 42 |
| BslFI | GGGAC | 3 cut(s) | 344, 391, 1087 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 46, 47, 328, 356, 479, 970 |
| BsmAI | GTCTC | 2 cut(s) | 47, 186 |
| BsmFI | GGGAC | 3 cut(s) | 344, 391, 1087 |
| BsnI | GGCC | 7 cut(s) | 39, 321, 399, 483, 489, 493, 963 |
| Bso31I | GGTCTC | 2 cut(s) | 47, 186 |
| BsoBI | CYCGRG | 2 cut(s) | 23, 42 |
| Bsp13I | TCCGGA | 3 cut(s) | 601, 796, 1208 |
| Bsp143I | GATC | 4 cut(s) | 74, 186, 282, 312 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 260, 1227 |
| BspANI | GGCC | 7 cut(s) | 39, 321, 399, 483, 489, 493, 963 |
| BspCNI | CTCAG | 1 cut(s) | 252 |
| BspEI | TCCGGA | 3 cut(s) | 601, 796, 1208 |
| BspFNI | CGCG | 4 cut(s) | 105, 357, 362, 700 |
| BspPI | GGATC | 3 cut(s) | 69, 82, 181 |
| BspT107I | GGYRCC | 1 cut(s) | 227 |
| BspTNI | GGTCTC | 2 cut(s) | 47, 186 |
| BsrDI | GCAATG | 1 cut(s) | 934 |
| BsrFI | RCCGGY | 1 cut(s) | 489 |
| BsrI | ACTGG | 2 cut(s) | 755, 827 |
| BssAI | RCCGGY | 1 cut(s) | 489 |
| BssECI | CCNNGG | 8 cut(s) | 41, 42, 78, 103, 350, 484, 494, 698 |
| BssMI | GATC | 4 cut(s) | 74, 186, 282, 312 |
| BssT1I | CCWWGG | 1 cut(s) | 78 |
| Bst2UI | CCWGG | 1 cut(s) | 1238 |
| Bst4CI | ACNGT | 3 cut(s) | 382, 986, 1034 |
| Bst6I | CTCTTC | 6 cut(s) | 414, 470, 509, 668, 885, 963 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 694 |
| BstC8I | GCNNGC | 1 cut(s) | 491 |
| BstDEI | CTNAG | 4 cut(s) | 260, 651, 1053, 1227 |
| BstDSI | CCRYGG | 2 cut(s) | 103, 698 |
| BstF5I | GGATG | 5 cut(s) | 189, 589, 796, 892, 1063 |
| BstFNI | CGCG | 4 cut(s) | 105, 357, 362, 700 |
| BstHHI | GCGC | 2 cut(s) | 357, 362 |
| BstKTI | GATC | 4 cut(s) | 77, 189, 285, 315 |
| BstMAI | GTCTC | 2 cut(s) | 47, 186 |
| BstMBI | GATC | 4 cut(s) | 74, 186, 282, 312 |
| BstMCI | CGRYCG | 2 cut(s) | 94, 494 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 28, 247, 256, 694 |
| BstNI | CCWGG | 1 cut(s) | 1238 |
| BstNSI | RCATGY | 1 cut(s) | 250 |
| BstSCI | CCNGG | 6 cut(s) | 41, 42, 70, 483, 493, 1236 |
| BstUI | CGCG | 4 cut(s) | 105, 357, 362, 700 |
| BstV1I | GCAGC | 2 cut(s) | 908, 986 |
| BstX2I | RGATCY | 1 cut(s) | 74 |
| BstYI | RGATCY | 1 cut(s) | 74 |
| BstZI | CGGCCG | 1 cut(s) | 491 |
| BsuRI | GGCC | 7 cut(s) | 39, 321, 399, 483, 489, 493, 963 |
| BtgI | CCRYGG | 2 cut(s) | 103, 698 |
| BtrI | CACGTC | 1 cut(s) | 297 |
| BtsCI | GGATG | 5 cut(s) | 189, 589, 796, 892, 1063 |
| BtsI | GCAGTG | 1 cut(s) | 625 |
| BtsIMutI | CAGTG | 1 cut(s) | 625 |
| Cac8I | GCNNGC | 1 cut(s) | 491 |
| CfoI | GCGC | 2 cut(s) | 357, 362 |
| Cfr10I | RCCGGY | 1 cut(s) | 489 |
| Cfr13I | GGNCC | 9 cut(s) | 38, 82, 397, 481, 487, 752, 824, 951, 961 |
| Cfr42I | CCGCGG | 2 cut(s) | 106, 701 |
| Cfr9I | CCCGGG | 1 cut(s) | 42 |
| Csp6I | GTAC | 2 cut(s) | 64, 292 |
| CviAII | CATG | 3 cut(s) | 247, 323, 965 |
| CviQI | GTAC | 2 cut(s) | 64, 292 |
| DdeI | CTNAG | 4 cut(s) | 260, 651, 1053, 1227 |
| DpnI | GATC | 4 cut(s) | 76, 188, 284, 314 |
| DpnII | GATC | 4 cut(s) | 74, 186, 282, 312 |
| EaeI | YGGCCR | 1 cut(s) | 491 |
| EagI | CGGCCG | 1 cut(s) | 491 |
| Eam1104I | CTCTTC | 6 cut(s) | 414, 470, 509, 668, 885, 963 |
| EarI | CTCTTC | 6 cut(s) | 414, 470, 509, 668, 885, 963 |
| EciI | GGCGGA | 1 cut(s) | 743 |
| EclXI | CGGCCG | 1 cut(s) | 491 |
| Eco130I | CCWWGG | 1 cut(s) | 78 |
| Eco31I | GGTCTC | 2 cut(s) | 47, 186 |
| Eco32I | GATATC | 1 cut(s) | 835 |
| Eco47I | GGWCC | 4 cut(s) | 82, 752, 824, 951 |
| Eco52I | CGGCCG | 1 cut(s) | 491 |
| Eco88I | CYCGRG | 2 cut(s) | 23, 42 |
| EcoO109I | RGGNCCY | 1 cut(s) | 38 |
| EcoRI | GAATTC | 1 cut(s) | 424 |
| EcoRII | CCWGG | 1 cut(s) | 1236 |
| EcoRV | GATATC | 1 cut(s) | 835 |
| EcoT14I | CCWWGG | 1 cut(s) | 78 |
| ErhI | CCWWGG | 1 cut(s) | 78 |
| FaeI | CATG | 3 cut(s) | 250, 326, 968 |
| FaiI | YATR | 7 cut(s) | 248, 324, 855, 966, 1155, 1245, 1247 |
| FaqI | GGGAC | 3 cut(s) | 344, 391, 1087 |
| FatI | CATG | 3 cut(s) | 246, 322, 964 |
| FauI | CCCGC | 2 cut(s) | 358, 693 |
| Fnu4HI | GCNGC | 7 cut(s) | 106, 358, 363, 698, 726, 897, 975 |
| FokI | GGATG | 5 cut(s) | 196, 596, 803, 899, 1070 |
| FseI | GGCCGGCC | 1 cut(s) | 493 |
| Fsp4HI | GCNGC | 7 cut(s) | 106, 358, 363, 698, 726, 897, 975 |
| FspBI | CTAG | 3 cut(s) | 59, 504, 1232 |
| GlaI | GCGC | 2 cut(s) | 356, 361 |
| GluI | GCNGC | 7 cut(s) | 106, 358, 363, 698, 726, 897, 975 |
| HaeIII | GGCC | 7 cut(s) | 39, 321, 399, 483, 489, 493, 963 |
| HhaI | GCGC | 2 cut(s) | 357, 362 |
| Hin1II | CATG | 3 cut(s) | 250, 326, 968 |
| Hin6I | GCGC | 2 cut(s) | 355, 360 |
| HinP1I | GCGC | 2 cut(s) | 355, 360 |
| HphI | GGTGA | 1 cut(s) | 782 |
| Hpy166II | GTNNAC | 3 cut(s) | 223, 294, 632 |
| Hpy188I | TCNGA | 7 cut(s) | 86, 166, 191, 351, 430, 610, 955 |
| Hpy188III | TCNNGA | 5 cut(s) | 25, 310, 602, 797, 1209 |
| Hpy8I | GTNNAC | 3 cut(s) | 223, 294, 632 |
| Hpy99I | CGWCG | 3 cut(s) | 170, 269, 275 |
| HpyCH4III | ACNGT | 3 cut(s) | 382, 986, 1034 |
| HpyCH4IV | ACGT | 1 cut(s) | 296 |
| HpyCH4V | TGCA | 2 cut(s) | 618, 688 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 28, 247, 256, 694 |
| HpyF3I | CTNAG | 4 cut(s) | 260, 651, 1053, 1227 |
| HpySE526I | ACGT | 1 cut(s) | 296 |
| Hsp92II | CATG | 3 cut(s) | 250, 326, 968 |
| HspAI | GCGC | 2 cut(s) | 355, 360 |
| Kpn2I | TCCGGA | 3 cut(s) | 601, 796, 1208 |
| KroI | GCCGGC | 1 cut(s) | 489 |
| KroNI | GCCGGC | 1 cut(s) | 491 |
| KspI | CCGCGG | 2 cut(s) | 106, 701 |
| Kzo9I | GATC | 4 cut(s) | 74, 186, 282, 312 |
| LmnI | GCTCC | 4 cut(s) | 4, 256, 799, 1111 |
| Lsp1109I | GCAGC | 2 cut(s) | 908, 986 |
| LweI | GCATC | 2 cut(s) | 18, 853 |
| MaeI | CTAG | 3 cut(s) | 59, 504, 1232 |
| MaeII | ACGT | 1 cut(s) | 296 |
| MalI | GATC | 4 cut(s) | 76, 188, 284, 314 |
| MboI | GATC | 4 cut(s) | 74, 186, 282, 312 |
| MflI | RGATCY | 1 cut(s) | 74 |
| MluCI | AATT | 7 cut(s) | 424, 431, 453, 613, 736, 747, 877 |
| MlyI | GAGTC | 5 cut(s) | 122, 155, 194, 400, 1073 |
| MmeI | TCCRAC | 6 cut(s) | 189, 231, 234, 973, 994, 1007 |
| MroI | TCCGGA | 3 cut(s) | 601, 796, 1208 |
| MroNI | GCCGGC | 1 cut(s) | 489 |
| MseI | TTAA | 5 cut(s) | 765, 1044, 1089, 1182, 1279 |
| MspA1I | CMGCKG | 2 cut(s) | 105, 700 |
| MspR9I | CCNGG | 6 cut(s) | 43, 44, 72, 485, 495, 1238 |
| MteI | GCGCNGCGC | 1 cut(s) | 358 |
| MvaI | CCWGG | 1 cut(s) | 1238 |
| MvnI | CGCG | 4 cut(s) | 105, 357, 362, 700 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 28, 247, 256, 694 |
| NaeI | GCCGGC | 1 cut(s) | 491 |
| NciI | CCSGG | 5 cut(s) | 43, 44, 72, 485, 495 |
| NdeII | GATC | 4 cut(s) | 74, 186, 282, 312 |
| NgoMIV | GCCGGC | 1 cut(s) | 489 |
| NlaIII | CATG | 3 cut(s) | 250, 326, 968 |
| NspI | RCATGY | 1 cut(s) | 250 |
| PaeR7I | CTCGAG | 1 cut(s) | 23 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 96, 165, 216 |
| PdiI | GCCGGC | 1 cut(s) | 491 |
| PfeI | GAWTC | 6 cut(s) | 87, 170, 346, 605, 809, 1163 |
| PfoI | TCCNGGA | 1 cut(s) | 1236 |
| PkrI | GCNGC | 7 cut(s) | 107, 359, 364, 699, 727, 898, 976 |
| PleI | GAGTC | 5 cut(s) | 122, 155, 194, 399, 1073 |
| PpsI | GAGTC | 5 cut(s) | 122, 155, 194, 399, 1073 |
| Psp6I | CCWGG | 1 cut(s) | 1236 |
| PspGI | CCWGG | 1 cut(s) | 1236 |
| PspPI | GGNCC | 9 cut(s) | 38, 82, 397, 481, 487, 752, 824, 951, 961 |
| PsuI | RGATCY | 1 cut(s) | 74 |
| RigI | GGCCGGCC | 1 cut(s) | 493 |
| RsaI | GTAC | 2 cut(s) | 65, 293 |
| RsaNI | GTAC | 2 cut(s) | 64, 292 |
| SacII | CCGCGG | 2 cut(s) | 106, 701 |
| SaqAI | TTAA | 5 cut(s) | 765, 1044, 1089, 1182, 1279 |
| SatI | GCNGC | 7 cut(s) | 106, 358, 363, 698, 726, 897, 975 |
| Sau3AI | GATC | 4 cut(s) | 74, 186, 282, 312 |
| Sau96I | GGNCC | 9 cut(s) | 38, 82, 397, 481, 487, 752, 824, 951, 961 |
| SchI | GAGTC | 5 cut(s) | 122, 155, 194, 400, 1073 |
| ScrFI | CCNGG | 6 cut(s) | 43, 44, 72, 485, 495, 1238 |
| SfaNI | GCATC | 2 cut(s) | 18, 853 |
| Sfr274I | CTCGAG | 1 cut(s) | 23 |
| Sfr303I | CCGCGG | 2 cut(s) | 106, 701 |
| SgrBI | CCGCGG | 2 cut(s) | 106, 701 |
| SinI | GGWCC | 4 cut(s) | 82, 752, 824, 951 |
| SlaI | CTCGAG | 1 cut(s) | 23 |
| SmaI | CCCGGG | 1 cut(s) | 44 |
| SmlI | CTYRAG | 3 cut(s) | 17, 23, 236 |
| SmoI | CTYRAG | 3 cut(s) | 17, 23, 236 |
| Sse9I | AATT | 7 cut(s) | 424, 431, 453, 613, 736, 747, 877 |
| SspMI | CTAG | 3 cut(s) | 59, 504, 1232 |
| StyD4I | CCNGG | 6 cut(s) | 41, 42, 70, 483, 493, 1236 |
| StyI | CCWWGG | 1 cut(s) | 78 |
| TaaI | ACNGT | 3 cut(s) | 382, 986, 1034 |
| TaiI | ACGT | 1 cut(s) | 299 |
| TaqI | TCGA | 4 cut(s) | 24, 159, 198, 315 |
| TaqII | GACCGA | 1 cut(s) | 80 |
| TasI | AATT | 7 cut(s) | 424, 431, 453, 613, 736, 747, 877 |
| TatI | WGTACW | 1 cut(s) | 291 |
| TauI | GCSGC | 5 cut(s) | 108, 360, 365, 700, 728 |
| TfiI | GAWTC | 6 cut(s) | 87, 170, 346, 605, 809, 1163 |
| Tru1I | TTAA | 5 cut(s) | 765, 1044, 1089, 1182, 1279 |
| Tru9I | TTAA | 5 cut(s) | 765, 1044, 1089, 1182, 1279 |
| TscAI | CASTG | 1 cut(s) | 625 |
| TseI | GCWGC | 2 cut(s) | 896, 974 |
| TspDTI | ATGAA | 3 cut(s) | 339, 903, 981 |
| TspGWI | ACGGA | 2 cut(s) | 225, 295 |
| TspMI | CCCGGG | 1 cut(s) | 42 |
| TspRI | CASTG | 1 cut(s) | 625 |
| VpaK11BI | GGWCC | 4 cut(s) | 82, 752, 824, 951 |
| XapI | RAATTY | 3 cut(s) | 424, 736, 877 |
| XceI | RCATGY | 1 cut(s) | 250 |
| XhoI | CTCGAG | 1 cut(s) | 23 |
| XmaI | CCCGGG | 1 cut(s) | 42 |
| XspI | CTAG | 3 cut(s) | 59, 504, 1232 |