RchiOBHm_Chr4g0391131

FHA domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
6417292 .. 6422277
4986 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36402

Sequence Viewer

Length: 1281 bp
ATGGAGCCTTTATCTCTCAAGCTCGAGATGCTCAAAGGCCCCCGGGAGGGAGAGACCCTAGAGTACCGACCCGGATCCAAGGTCCGAATCGGTCGGGTCGTCCGCGGCAACAACCTCCCCATCAAAGACTCCGGCATTTCCACCAACCACCTCATCATCGACTCCGACGAATCGGGTCAATGGATGATCCGAGACCTCGACTCCTCCAACGGAACCATCGTAAACGGCACCAAGCTCAAGCCGGACATGCCGTTGGAGCTGAGCGACGGCGACGAGATAAAGATCGGGGAGTACACGTCCATCTCCGTCAAGATCGAAGGCCATGAAGGGGACAGGTTGAGAAGGAATCCGAGGCGCGGCGCGGCGGGGAAGGTGGGGACGGTTGAGGAGAGTCGGGGCCGGAGAGGGAGGAAGAAGGAAGAGAATTCTGAATTGGAGAAAGAGGGAGAGGAAATTGAGGTGGTGGAGAAGCCGAAGAGGGGCCGGGGCCGGCCGGGGAAAGCTAGGGTTTTGAAGAGTGTGGATTTGGTGGAGGAGGTTGCTGTGCCGGAAGTGAGTTTGAGAGCAACTCAAAGGTGTAAGGATGTGGAAGCTGTGGTTCCGGATTCGGAGAATTGCAGTGTAGAGTGTGAACAAGTGAAGATTGAACCTAAGAGGCGTGGTGGGGGTAGGAAGAGGAAGAATGTGCAAGAAGTGCCGCGGGTGTGTGAGGAAGGTAATGTTGCGGCGGAGAAAAATTTGGGAGAAATTGGTCCAGTTGGTGTTAATGGTGATAACGATGATAAAGGGGATGTTCCGGAGCAGAAGGATTCGGGGGGAATAGGTCCAGTTGATATCAAGGAGAATGGCGTGTATGATGATGATGCTAAAGGGTTGAATTTGGGGGATGAAGAGGCAGCAGTCGGTTTTGATGTGGCAGAGAGTGGCAATGATAATGAGAAGGCAAAAGGGTCCGATTTGGGCCATGAAGAGGCAGCCATTGACTGTAATGTTGGAGAGAGTGGCGATAAGGTTGGAAGTGGTAGTTGGAACTGTTTTGGTGTTAATGGTGCTAAGGATGTTGATAAAAAGGGGACTGACTCTGGTGTTAAAGAAGGTTTGAGTTGGCAGGAGCCAGATTTGGAGAAGATGACTTTGGACGATTGGTTTGATTATGTGGAAGATTCTTTGCCGAAAGCGGTTAATAATGAGATTGACAAGATTTGTTCCGGAATGAGAGAGAAGGCTAAGCTAGTCCAGGAGTATATAGCACAATACAAGAAGGAGAAGTGTCAAAGTTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

426

Amino Acids

46.51

Weight (kDa)

4.93

Isoelectric Point (pI)

33.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yop-YscD_cpl PF16697 9 - 97 6e-09 Inner membrane component of T3SS, cytoplasmic domain
FHA PF00498 28 - 96 5e-18 FHA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 227
AccII CGCG 4 cut(s) 105, 357, 362, 700
AccIII TCCGGA 3 cut(s) 601, 796, 1208
AclWI GGATC 3 cut(s) 69, 82, 181
AcoI YGGCCR 1 cut(s) 491
AcsI RAATTY 3 cut(s) 424, 736, 877
AfaI GTAC 2 cut(s) 65, 293
AfiI CCNNNNNNNGG 6 cut(s) 46, 47, 328, 356, 479, 970
AflIII ACRYGT 1 cut(s) 294
AgsI TTSAA 3 cut(s) 514, 647, 877
AjiI CACGTC 1 cut(s) 297
AjnI CCWGG 1 cut(s) 1236
AjuI GAANNNNNNNTTGG 6 cut(s) 416, 448, 1009, 1041, 1118, 1150
AluBI AGCT 6 cut(s) 22, 235, 259, 503, 593, 1231
AluI AGCT 6 cut(s) 22, 235, 259, 503, 593, 1231
Alw26I GTCTC 2 cut(s) 47, 186
AlwI GGATC 3 cut(s) 69, 82, 181
Ama87I CYCGRG 2 cut(s) 23, 42
Aor13HI TCCGGA 3 cut(s) 601, 796, 1208
AoxI GGCC 7 cut(s) 37, 319, 397, 481, 487, 491, 961
ApeKI GCWGC 2 cut(s) 896, 974
ApoI RAATTY 3 cut(s) 424, 736, 877
ArsI GACNNNNNNTTYG 2 cut(s) 1130, 1162
AspLEI GCGC 2 cut(s) 357, 362
AspS9I GGNCC 9 cut(s) 38, 82, 397, 481, 487, 752, 824, 951, 961
AsuC2I CCSGG 5 cut(s) 43, 44, 72, 485, 495
AsuHPI GGTGA 1 cut(s) 782
AvaI CYCGRG 2 cut(s) 23, 42
AvaII GGWCC 4 cut(s) 82, 752, 824, 951
BamHI GGATCC 1 cut(s) 74
BanI GGYRCC 1 cut(s) 227
BbvI GCAGC 2 cut(s) 908, 986
BccI CCATC 3 cut(s) 128, 224, 308
BceAI ACGGC 3 cut(s) 235, 241, 283
BciT130I CCWGG 1 cut(s) 1238
BcnI CCSGG 5 cut(s) 43, 44, 72, 485, 495
BcoDI GTCTC 2 cut(s) 47, 186
BfaI CTAG 3 cut(s) 59, 504, 1232
BisI GCNGC 7 cut(s) 106, 358, 363, 698, 726, 897, 975
BlpI GCTNAGC 2 cut(s) 260, 1227
BlsI GCNGC 7 cut(s) 107, 359, 364, 699, 727, 898, 976
Bme1390I CCNGG 6 cut(s) 43, 44, 72, 485, 495, 1238
Bme18I GGWCC 4 cut(s) 82, 752, 824, 951
BmeT110I CYCGRG 2 cut(s) 23, 42
BmgBI CACGTC 1 cut(s) 297
BmgT120I GGNCC 9 cut(s) 38, 82, 397, 481, 487, 752, 824, 951, 961
BmrFI CCNGG 6 cut(s) 43, 44, 72, 485, 495, 1238
BmsI GCATC 2 cut(s) 18, 853
BplI GAGNNNNNCTC 2 cut(s) 553, 585
Bpu10I CCTNAGC 1 cut(s) 1053
Bpu1102I GCTNAGC 2 cut(s) 260, 1227
BpuEI CTTGAG 1 cut(s) 221
BpuMI CCSGG 5 cut(s) 43, 44, 72, 485, 495
BsaBI GATNNNNATC 1 cut(s) 281
BsaI GGTCTC 2 cut(s) 47, 186
BsaJI CCNNGG 8 cut(s) 41, 42, 78, 103, 350, 484, 494, 698
BsaWI WCCGGW 3 cut(s) 601, 796, 1208
BsaXI ACNNNNNCTCC 4 cut(s) 185, 215, 281, 311
Bsc4I CCNNNNNNNGG 6 cut(s) 46, 47, 328, 356, 479, 970
Bse118I RCCGGY 1 cut(s) 489
Bse1I ACTGG 2 cut(s) 755, 827
Bse3DI GCAATG 1 cut(s) 934
Bse8I GATNNNNATC 1 cut(s) 281
BseAI TCCGGA 3 cut(s) 601, 796, 1208
BseBI CCWGG 1 cut(s) 1238
BseDI CCNNGG 8 cut(s) 41, 42, 78, 103, 350, 484, 494, 698
BseGI GGATG 5 cut(s) 189, 589, 796, 892, 1063
BseJI GATNNNNATC 1 cut(s) 281
BseLI CCNNNNNNNGG 6 cut(s) 46, 47, 328, 356, 479, 970
BseMI GCAATG 1 cut(s) 934
BseMII CTCAG 1 cut(s) 251
BseNI ACTGG 2 cut(s) 755, 827
BseRI GAGGAG 3 cut(s) 193, 401, 548
BseX3I CGGCCG 1 cut(s) 491
BseXI GCAGC 2 cut(s) 908, 986
Bsh1236I CGCG 4 cut(s) 105, 357, 362, 700
Bsh1285I CGRYCG 2 cut(s) 94, 494
BshFI GGCC 7 cut(s) 39, 321, 399, 483, 489, 493, 963
BshNI GGYRCC 1 cut(s) 227
BsiEI CGRYCG 2 cut(s) 94, 494
BsiHKCI CYCGRG 2 cut(s) 23, 42
BslFI GGGAC 3 cut(s) 344, 391, 1087
BslI CCNNNNNNNGG 6 cut(s) 46, 47, 328, 356, 479, 970
BsmAI GTCTC 2 cut(s) 47, 186
BsmFI GGGAC 3 cut(s) 344, 391, 1087
BsnI GGCC 7 cut(s) 39, 321, 399, 483, 489, 493, 963
Bso31I GGTCTC 2 cut(s) 47, 186
BsoBI CYCGRG 2 cut(s) 23, 42
Bsp13I TCCGGA 3 cut(s) 601, 796, 1208
Bsp143I GATC 4 cut(s) 74, 186, 282, 312
Bsp1720I GCTNAGC 2 cut(s) 260, 1227
BspANI GGCC 7 cut(s) 39, 321, 399, 483, 489, 493, 963
BspCNI CTCAG 1 cut(s) 252
BspEI TCCGGA 3 cut(s) 601, 796, 1208
BspFNI CGCG 4 cut(s) 105, 357, 362, 700
BspPI GGATC 3 cut(s) 69, 82, 181
BspT107I GGYRCC 1 cut(s) 227
BspTNI GGTCTC 2 cut(s) 47, 186
BsrDI GCAATG 1 cut(s) 934
BsrFI RCCGGY 1 cut(s) 489
BsrI ACTGG 2 cut(s) 755, 827
BssAI RCCGGY 1 cut(s) 489
BssECI CCNNGG 8 cut(s) 41, 42, 78, 103, 350, 484, 494, 698
BssMI GATC 4 cut(s) 74, 186, 282, 312
BssT1I CCWWGG 1 cut(s) 78
Bst2UI CCWGG 1 cut(s) 1238
Bst4CI ACNGT 3 cut(s) 382, 986, 1034
Bst6I CTCTTC 6 cut(s) 414, 470, 509, 668, 885, 963
BstAPI GCANNNNNTGC 1 cut(s) 694
BstC8I GCNNGC 1 cut(s) 491
BstDEI CTNAG 4 cut(s) 260, 651, 1053, 1227
BstDSI CCRYGG 2 cut(s) 103, 698
BstF5I GGATG 5 cut(s) 189, 589, 796, 892, 1063
BstFNI CGCG 4 cut(s) 105, 357, 362, 700
BstHHI GCGC 2 cut(s) 357, 362
BstKTI GATC 4 cut(s) 77, 189, 285, 315
BstMAI GTCTC 2 cut(s) 47, 186
BstMBI GATC 4 cut(s) 74, 186, 282, 312
BstMCI CGRYCG 2 cut(s) 94, 494
BstMWI GCNNNNNNNGC 4 cut(s) 28, 247, 256, 694
BstNI CCWGG 1 cut(s) 1238
BstNSI RCATGY 1 cut(s) 250
BstSCI CCNGG 6 cut(s) 41, 42, 70, 483, 493, 1236
BstUI CGCG 4 cut(s) 105, 357, 362, 700
BstV1I GCAGC 2 cut(s) 908, 986
BstX2I RGATCY 1 cut(s) 74
BstYI RGATCY 1 cut(s) 74
BstZI CGGCCG 1 cut(s) 491
BsuRI GGCC 7 cut(s) 39, 321, 399, 483, 489, 493, 963
BtgI CCRYGG 2 cut(s) 103, 698
BtrI CACGTC 1 cut(s) 297
BtsCI GGATG 5 cut(s) 189, 589, 796, 892, 1063
BtsI GCAGTG 1 cut(s) 625
BtsIMutI CAGTG 1 cut(s) 625
Cac8I GCNNGC 1 cut(s) 491
CfoI GCGC 2 cut(s) 357, 362
Cfr10I RCCGGY 1 cut(s) 489
Cfr13I GGNCC 9 cut(s) 38, 82, 397, 481, 487, 752, 824, 951, 961
Cfr42I CCGCGG 2 cut(s) 106, 701
Cfr9I CCCGGG 1 cut(s) 42
Csp6I GTAC 2 cut(s) 64, 292
CviAII CATG 3 cut(s) 247, 323, 965
CviQI GTAC 2 cut(s) 64, 292
DdeI CTNAG 4 cut(s) 260, 651, 1053, 1227
DpnI GATC 4 cut(s) 76, 188, 284, 314
DpnII GATC 4 cut(s) 74, 186, 282, 312
EaeI YGGCCR 1 cut(s) 491
EagI CGGCCG 1 cut(s) 491
Eam1104I CTCTTC 6 cut(s) 414, 470, 509, 668, 885, 963
EarI CTCTTC 6 cut(s) 414, 470, 509, 668, 885, 963
EciI GGCGGA 1 cut(s) 743
EclXI CGGCCG 1 cut(s) 491
Eco130I CCWWGG 1 cut(s) 78
Eco31I GGTCTC 2 cut(s) 47, 186
Eco32I GATATC 1 cut(s) 835
Eco47I GGWCC 4 cut(s) 82, 752, 824, 951
Eco52I CGGCCG 1 cut(s) 491
Eco88I CYCGRG 2 cut(s) 23, 42
EcoO109I RGGNCCY 1 cut(s) 38
EcoRI GAATTC 1 cut(s) 424
EcoRII CCWGG 1 cut(s) 1236
EcoRV GATATC 1 cut(s) 835
EcoT14I CCWWGG 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 78
FaeI CATG 3 cut(s) 250, 326, 968
FaiI YATR 7 cut(s) 248, 324, 855, 966, 1155, 1245, 1247
FaqI GGGAC 3 cut(s) 344, 391, 1087
FatI CATG 3 cut(s) 246, 322, 964
FauI CCCGC 2 cut(s) 358, 693
Fnu4HI GCNGC 7 cut(s) 106, 358, 363, 698, 726, 897, 975
FokI GGATG 5 cut(s) 196, 596, 803, 899, 1070
FseI GGCCGGCC 1 cut(s) 493
Fsp4HI GCNGC 7 cut(s) 106, 358, 363, 698, 726, 897, 975
FspBI CTAG 3 cut(s) 59, 504, 1232
GlaI GCGC 2 cut(s) 356, 361
GluI GCNGC 7 cut(s) 106, 358, 363, 698, 726, 897, 975
HaeIII GGCC 7 cut(s) 39, 321, 399, 483, 489, 493, 963
HhaI GCGC 2 cut(s) 357, 362
Hin1II CATG 3 cut(s) 250, 326, 968
Hin6I GCGC 2 cut(s) 355, 360
HinP1I GCGC 2 cut(s) 355, 360
HphI GGTGA 1 cut(s) 782
Hpy166II GTNNAC 3 cut(s) 223, 294, 632
Hpy188I TCNGA 7 cut(s) 86, 166, 191, 351, 430, 610, 955
Hpy188III TCNNGA 5 cut(s) 25, 310, 602, 797, 1209
Hpy8I GTNNAC 3 cut(s) 223, 294, 632
Hpy99I CGWCG 3 cut(s) 170, 269, 275
HpyCH4III ACNGT 3 cut(s) 382, 986, 1034
HpyCH4IV ACGT 1 cut(s) 296
HpyCH4V TGCA 2 cut(s) 618, 688
HpyF10VI GCNNNNNNNGC 4 cut(s) 28, 247, 256, 694
HpyF3I CTNAG 4 cut(s) 260, 651, 1053, 1227
HpySE526I ACGT 1 cut(s) 296
Hsp92II CATG 3 cut(s) 250, 326, 968
HspAI GCGC 2 cut(s) 355, 360
Kpn2I TCCGGA 3 cut(s) 601, 796, 1208
KroI GCCGGC 1 cut(s) 489
KroNI GCCGGC 1 cut(s) 491
KspI CCGCGG 2 cut(s) 106, 701
Kzo9I GATC 4 cut(s) 74, 186, 282, 312
LmnI GCTCC 4 cut(s) 4, 256, 799, 1111
Lsp1109I GCAGC 2 cut(s) 908, 986
LweI GCATC 2 cut(s) 18, 853
MaeI CTAG 3 cut(s) 59, 504, 1232
MaeII ACGT 1 cut(s) 296
MalI GATC 4 cut(s) 76, 188, 284, 314
MboI GATC 4 cut(s) 74, 186, 282, 312
MflI RGATCY 1 cut(s) 74
MluCI AATT 7 cut(s) 424, 431, 453, 613, 736, 747, 877
MlyI GAGTC 5 cut(s) 122, 155, 194, 400, 1073
MmeI TCCRAC 6 cut(s) 189, 231, 234, 973, 994, 1007
MroI TCCGGA 3 cut(s) 601, 796, 1208
MroNI GCCGGC 1 cut(s) 489
MseI TTAA 5 cut(s) 765, 1044, 1089, 1182, 1279
MspA1I CMGCKG 2 cut(s) 105, 700
MspR9I CCNGG 6 cut(s) 43, 44, 72, 485, 495, 1238
MteI GCGCNGCGC 1 cut(s) 358
MvaI CCWGG 1 cut(s) 1238
MvnI CGCG 4 cut(s) 105, 357, 362, 700
MwoI GCNNNNNNNGC 4 cut(s) 28, 247, 256, 694
NaeI GCCGGC 1 cut(s) 491
NciI CCSGG 5 cut(s) 43, 44, 72, 485, 495
NdeII GATC 4 cut(s) 74, 186, 282, 312
NgoMIV GCCGGC 1 cut(s) 489
NlaIII CATG 3 cut(s) 250, 326, 968
NspI RCATGY 1 cut(s) 250
PaeR7I CTCGAG 1 cut(s) 23
PcsI WCGNNNNNNNCGW 3 cut(s) 96, 165, 216
PdiI GCCGGC 1 cut(s) 491
PfeI GAWTC 6 cut(s) 87, 170, 346, 605, 809, 1163
PfoI TCCNGGA 1 cut(s) 1236
PkrI GCNGC 7 cut(s) 107, 359, 364, 699, 727, 898, 976
PleI GAGTC 5 cut(s) 122, 155, 194, 399, 1073
PpsI GAGTC 5 cut(s) 122, 155, 194, 399, 1073
Psp6I CCWGG 1 cut(s) 1236
PspGI CCWGG 1 cut(s) 1236
PspPI GGNCC 9 cut(s) 38, 82, 397, 481, 487, 752, 824, 951, 961
PsuI RGATCY 1 cut(s) 74
RigI GGCCGGCC 1 cut(s) 493
RsaI GTAC 2 cut(s) 65, 293
RsaNI GTAC 2 cut(s) 64, 292
SacII CCGCGG 2 cut(s) 106, 701
SaqAI TTAA 5 cut(s) 765, 1044, 1089, 1182, 1279
SatI GCNGC 7 cut(s) 106, 358, 363, 698, 726, 897, 975
Sau3AI GATC 4 cut(s) 74, 186, 282, 312
Sau96I GGNCC 9 cut(s) 38, 82, 397, 481, 487, 752, 824, 951, 961
SchI GAGTC 5 cut(s) 122, 155, 194, 400, 1073
ScrFI CCNGG 6 cut(s) 43, 44, 72, 485, 495, 1238
SfaNI GCATC 2 cut(s) 18, 853
Sfr274I CTCGAG 1 cut(s) 23
Sfr303I CCGCGG 2 cut(s) 106, 701
SgrBI CCGCGG 2 cut(s) 106, 701
SinI GGWCC 4 cut(s) 82, 752, 824, 951
SlaI CTCGAG 1 cut(s) 23
SmaI CCCGGG 1 cut(s) 44
SmlI CTYRAG 3 cut(s) 17, 23, 236
SmoI CTYRAG 3 cut(s) 17, 23, 236
Sse9I AATT 7 cut(s) 424, 431, 453, 613, 736, 747, 877
SspMI CTAG 3 cut(s) 59, 504, 1232
StyD4I CCNGG 6 cut(s) 41, 42, 70, 483, 493, 1236
StyI CCWWGG 1 cut(s) 78
TaaI ACNGT 3 cut(s) 382, 986, 1034
TaiI ACGT 1 cut(s) 299
TaqI TCGA 4 cut(s) 24, 159, 198, 315
TaqII GACCGA 1 cut(s) 80
TasI AATT 7 cut(s) 424, 431, 453, 613, 736, 747, 877
TatI WGTACW 1 cut(s) 291
TauI GCSGC 5 cut(s) 108, 360, 365, 700, 728
TfiI GAWTC 6 cut(s) 87, 170, 346, 605, 809, 1163
Tru1I TTAA 5 cut(s) 765, 1044, 1089, 1182, 1279
Tru9I TTAA 5 cut(s) 765, 1044, 1089, 1182, 1279
TscAI CASTG 1 cut(s) 625
TseI GCWGC 2 cut(s) 896, 974
TspDTI ATGAA 3 cut(s) 339, 903, 981
TspGWI ACGGA 2 cut(s) 225, 295
TspMI CCCGGG 1 cut(s) 42
TspRI CASTG 1 cut(s) 625
VpaK11BI GGWCC 4 cut(s) 82, 752, 824, 951
XapI RAATTY 3 cut(s) 424, 736, 877
XceI RCATGY 1 cut(s) 250
XhoI CTCGAG 1 cut(s) 23
XmaI CCCGGG 1 cut(s) 42
XspI CTAG 3 cut(s) 59, 504, 1232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.