Rw4G002710

FHA domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
5340169 .. 5344661
4493 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G002710.1

Sequence Viewer

Length: 1401 bp
ATGGAGCCTTTAGCTCTCAAGCTCGAGATGCTCAAAGGCCCCCGTGAGGGAGAGACCCTAGAGTACCGACCCGGATCCAAGGTCCGGATCGGCCGGGTCGTCCGCGGCAACAACCTCCCCATCAAAGACTCCGGCATTTCCACCAACCACCTCATCATCGACTCCTCCGAATCGGGTCAATGGATGATCCGAGACCTCGACTCCTCCAACGGAACCATCGTAAACGGCACCAAGCTCAAGCCGGACACGCCGTTGGAGCTGAGCGACGGCGACGAGATAAAGATCGGGGAGTACACGTCGATCTCCGTCAAGATCGACGGCCACGAAGGGAGCAGGTTGAGAAGGAATCCGAGGCGCGGCGCGGCGGGGAACGTGGGGACGGCTGCGGAGAGTCGGGGCCGGAGAGGGAGGGTTAAGGAGAGTGAGGTCGAAGTGAAATTGGAGGTGGAGATTGAGAATGATGAGGAAATTAGTGTAGCAGCACCGGTCGCTGAGAATCGGGGCCGGAGAGGTAGGCTTGCGAAGAAGAAGGAAGAGAATTCTGAATTGGAGAAAGAGGGAGAGGAAGTTGAGGTGGTGGAGAAGCCGAAGAGGGGCCGGGGGCGGCCGAGGAAAGCTAGGGTTTTGAAGAGTGAGGATTTGGTGGAGGAGGTTGCTGTGCCGGAAGTGAGTTCGAGAGCAACTCAAAGGTGTAAGGATGTGGAAGCTGTGGTTCCGGATTCGGAGAATTGCAGTGTAGAGTGTGAACAAGTGAAGATTGAACCTAAGAGGCGTGGTGGGGGTAGGAAGAGGAAGAATGTGCAAGAAGTGCCGCGGGTGTGTGAGGAAGGTAATGTTGCGGCGGAGAAAGATTTGGGAGAAATTGGTCCAGTTGGTGTTAATGGCGATAATGATGATAAAGGGGATGTTCCGGAGCAGAAGGATTTGGGAGGAATTGGTCCTGTTGATATCAAGGAGAATGGCGTGTATGATGATGATGCTAAAGGGTTGAATTTGGGAGATGAAGAGGCAGCAGTCTGTTTTGATGTGGGAGAGAGTGGCAATGATAATGAGAAGGCAAAAGGGTCCGATTTGGGCCAGGAAGAGGCAGCCATTGACTGTAATGTTGGAGAGAGTGGCGATAAGGTTGGCAGTGGTAGTTGGAGCTGTTTTGGTGTTAGTGGTGCTAATGATGTTGATAAAAAGGGGACTGACTCTGGTGTTAAAGAAGGTTTGAGAAAGGTTTGGCAGGAGCCTGATTTGGAGAAGATGACTTTGGACGATTGGTTTGATTATGTGGAAGTTTCTTTGCTGAAAGCGGTTAATGATGAGATTGACAAGATTTGTTCCGGAATGAGAGAGAAGGCTAAGCTAGTCCAGGAGTATATAGCACAACACAAGAAGGAGAAGTGTCAAAGTTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

466

Amino Acids

50.87

Weight (kDa)

4.96

Isoelectric Point (pI)

35.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yop-YscD_cpl PF16697 9 - 97 1.8e-08 Inner membrane component of T3SS, cytoplasmic domain
FHA PF00498 28 - 96 3.6e-18 FHA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 324
AccB1I GGYRCC 1 cut(s) 227
AccII CGCG 4 cut(s) 105, 357, 362, 814
AccIII TCCGGA 4 cut(s) 84, 715, 910, 1328
AclWI GGATC 4 cut(s) 69, 82, 95, 181
AcoI YGGCCR 3 cut(s) 91, 319, 605
AcsI RAATTY 2 cut(s) 538, 991
AfaI GTAC 2 cut(s) 65, 293
AfiI CCNNNNNNNGG 6 cut(s) 46, 47, 84, 356, 593, 1084
AflIII ACRYGT 1 cut(s) 294
AgeI ACCGGT 1 cut(s) 484
AgsI TTSAA 3 cut(s) 628, 761, 991
AjiI CACGTC 1 cut(s) 297
AjnI CCWGG 2 cut(s) 1077, 1356
AjuI GAANNNNNNNTTGG 4 cut(s) 530, 562, 1238, 1270
AluBI AGCT 8 cut(s) 14, 22, 235, 259, 617, 707, 1146, 1351
AluI AGCT 8 cut(s) 14, 22, 235, 259, 617, 707, 1146, 1351
Alw26I GTCTC 2 cut(s) 47, 186
AlwI GGATC 4 cut(s) 69, 82, 95, 181
Ama87I CYCGRG 1 cut(s) 23
Aor13HI TCCGGA 4 cut(s) 84, 715, 910, 1328
AoxI GGCC 8 cut(s) 37, 91, 319, 397, 502, 595, 605, 1075
ApeKI GCWGC 4 cut(s) 383, 479, 1010, 1088
ApoI RAATTY 2 cut(s) 538, 991
ArsI GACNNNNNNTTYG 2 cut(s) 1250, 1282
AsiGI ACCGGT 1 cut(s) 484
AspLEI GCGC 2 cut(s) 357, 362
AspS9I GGNCC 9 cut(s) 38, 82, 397, 502, 595, 866, 938, 1065, 1075
AsuC2I CCSGG 3 cut(s) 72, 95, 599
AvaI CYCGRG 1 cut(s) 23
AvaII GGWCC 4 cut(s) 82, 866, 938, 1065
BamHI GGATCC 1 cut(s) 74
BanI GGYRCC 1 cut(s) 227
BbvI GCAGC 4 cut(s) 370, 491, 1022, 1100
BccI CCATC 2 cut(s) 128, 224
BceAI ACGGC 5 cut(s) 235, 241, 283, 334, 396
BciT130I CCWGG 2 cut(s) 1079, 1358
BcnI CCSGG 3 cut(s) 72, 95, 599
BcoDI GTCTC 2 cut(s) 47, 186
BfaI CTAG 3 cut(s) 59, 618, 1352
BfuAI ACCTGC 1 cut(s) 324
BlpI GCTNAGC 2 cut(s) 260, 1347
Bme1390I CCNGG 5 cut(s) 72, 95, 599, 1079, 1358
Bme18I GGWCC 4 cut(s) 82, 866, 938, 1065
BmeT110I CYCGRG 1 cut(s) 23
BmgBI CACGTC 1 cut(s) 297
BmgT120I GGNCC 9 cut(s) 38, 82, 397, 502, 595, 866, 938, 1065, 1075
BmrFI CCNGG 5 cut(s) 72, 95, 599, 1079, 1358
BmsI GCATC 2 cut(s) 18, 967
BplI GAGNNNNNCTC 2 cut(s) 667, 699
Bpu1102I GCTNAGC 2 cut(s) 260, 1347
BpuEI CTTGAG 1 cut(s) 221
BpuMI CCSGG 3 cut(s) 72, 95, 599
BsaBI GATNNNNATC 1 cut(s) 281
BsaI GGTCTC 2 cut(s) 47, 186
BsaJI CCNNGG 6 cut(s) 78, 103, 350, 598, 608, 812
BsaWI WCCGGW 5 cut(s) 84, 484, 715, 910, 1328
BsaXI ACNNNNNCTCC 6 cut(s) 185, 215, 281, 311, 552, 582
Bsc4I CCNNNNNNNGG 6 cut(s) 46, 47, 84, 356, 593, 1084
Bse118I RCCGGY 1 cut(s) 484
Bse1I ACTGG 1 cut(s) 869
Bse3DI GCAATG 1 cut(s) 1048
Bse8I GATNNNNATC 1 cut(s) 281
BseAI TCCGGA 4 cut(s) 84, 715, 910, 1328
BseBI CCWGG 2 cut(s) 1079, 1358
BseDI CCNNGG 6 cut(s) 78, 103, 350, 598, 608, 812
BseGI GGATG 3 cut(s) 189, 703, 910
BseJI GATNNNNATC 1 cut(s) 281
BseLI CCNNNNNNNGG 6 cut(s) 46, 47, 84, 356, 593, 1084
BseMI GCAATG 1 cut(s) 1048
BseMII CTCAG 2 cut(s) 251, 483
BseNI ACTGG 1 cut(s) 869
BseRI GAGGAG 3 cut(s) 154, 193, 662
BseX3I CGGCCG 2 cut(s) 91, 605
BseXI GCAGC 4 cut(s) 370, 491, 1022, 1100
Bsh1236I CGCG 4 cut(s) 105, 357, 362, 814
Bsh1285I CGRYCG 3 cut(s) 94, 489, 608
BshFI GGCC 8 cut(s) 39, 93, 321, 399, 504, 597, 607, 1077
BshNI GGYRCC 1 cut(s) 227
BshTI ACCGGT 1 cut(s) 484
BsiEI CGRYCG 3 cut(s) 94, 489, 608
BsiHKCI CYCGRG 1 cut(s) 23
BslFI GGGAC 2 cut(s) 391, 1201
BslI CCNNNNNNNGG 6 cut(s) 46, 47, 84, 356, 593, 1084
BsmAI GTCTC 2 cut(s) 47, 186
BsmFI GGGAC 2 cut(s) 391, 1201
BsnI GGCC 8 cut(s) 39, 93, 321, 399, 504, 597, 607, 1077
Bso31I GGTCTC 2 cut(s) 47, 186
BsoBI CYCGRG 1 cut(s) 23
Bsp13I TCCGGA 4 cut(s) 84, 715, 910, 1328
Bsp143I GATC 6 cut(s) 74, 87, 186, 282, 300, 312
Bsp1720I GCTNAGC 2 cut(s) 260, 1347
BspANI GGCC 8 cut(s) 39, 93, 321, 399, 504, 597, 607, 1077
BspCNI CTCAG 2 cut(s) 252, 484
BspEI TCCGGA 4 cut(s) 84, 715, 910, 1328
BspFNI CGCG 4 cut(s) 105, 357, 362, 814
BspMI ACCTGC 1 cut(s) 324
BspPI GGATC 4 cut(s) 69, 82, 95, 181
BspT107I GGYRCC 1 cut(s) 227
BspTNI GGTCTC 2 cut(s) 47, 186
BsrDI GCAATG 1 cut(s) 1048
BsrFI RCCGGY 1 cut(s) 484
BsrI ACTGG 1 cut(s) 869
BssAI RCCGGY 1 cut(s) 484
BssECI CCNNGG 6 cut(s) 78, 103, 350, 598, 608, 812
BssMI GATC 6 cut(s) 74, 87, 186, 282, 300, 312
BssT1I CCWWGG 1 cut(s) 78
Bst2UI CCWGG 2 cut(s) 1079, 1358
Bst4CI ACNGT 1 cut(s) 1100
Bst6I CTCTTC 6 cut(s) 528, 584, 623, 782, 999, 1077
BstAPI GCANNNNNTGC 1 cut(s) 808
BstC8I GCNNGC 1 cut(s) 519
BstDEI CTNAG 4 cut(s) 260, 492, 765, 1347
BstDSI CCRYGG 2 cut(s) 103, 812
BstF5I GGATG 3 cut(s) 189, 703, 910
BstFNI CGCG 4 cut(s) 105, 357, 362, 814
BstHHI GCGC 2 cut(s) 357, 362
BstKTI GATC 6 cut(s) 77, 90, 189, 285, 303, 315
BstMAI GTCTC 2 cut(s) 47, 186
BstMBI GATC 6 cut(s) 74, 87, 186, 282, 300, 312
BstMCI CGRYCG 3 cut(s) 94, 489, 608
BstMWI GCNNNNNNNGC 5 cut(s) 28, 247, 256, 488, 808
BstNI CCWGG 2 cut(s) 1079, 1358
BstSCI CCNGG 5 cut(s) 70, 93, 597, 1077, 1356
BstUI CGCG 4 cut(s) 105, 357, 362, 814
BstV1I GCAGC 4 cut(s) 370, 491, 1022, 1100
BstX2I RGATCY 1 cut(s) 74
BstYI RGATCY 1 cut(s) 74
BstZI CGGCCG 2 cut(s) 91, 605
BsuRI GGCC 8 cut(s) 39, 93, 321, 399, 504, 597, 607, 1077
BtgI CCRYGG 2 cut(s) 103, 812
BtrI CACGTC 1 cut(s) 297
BtsCI GGATG 3 cut(s) 189, 703, 910
BtsI GCAGTG 2 cut(s) 739, 1138
BtsIMutI CAGTG 2 cut(s) 739, 1138
BveI ACCTGC 1 cut(s) 324
Cac8I GCNNGC 1 cut(s) 519
CfoI GCGC 2 cut(s) 357, 362
Cfr10I RCCGGY 1 cut(s) 484
Cfr13I GGNCC 9 cut(s) 38, 82, 397, 502, 595, 866, 938, 1065, 1075
Cfr42I CCGCGG 2 cut(s) 106, 815
Csp6I GTAC 2 cut(s) 64, 292
CspAI ACCGGT 1 cut(s) 484
CviQI GTAC 2 cut(s) 64, 292
DdeI CTNAG 4 cut(s) 260, 492, 765, 1347
DpnI GATC 6 cut(s) 76, 89, 188, 284, 302, 314
DpnII GATC 6 cut(s) 74, 87, 186, 282, 300, 312
EaeI YGGCCR 3 cut(s) 91, 319, 605
EagI CGGCCG 2 cut(s) 91, 605
Eam1104I CTCTTC 6 cut(s) 528, 584, 623, 782, 999, 1077
EarI CTCTTC 6 cut(s) 528, 584, 623, 782, 999, 1077
EciI GGCGGA 1 cut(s) 857
EclXI CGGCCG 2 cut(s) 91, 605
Eco130I CCWWGG 1 cut(s) 78
Eco31I GGTCTC 2 cut(s) 47, 186
Eco32I GATATC 1 cut(s) 949
Eco47I GGWCC 4 cut(s) 82, 866, 938, 1065
Eco52I CGGCCG 2 cut(s) 91, 605
Eco88I CYCGRG 1 cut(s) 23
EcoO109I RGGNCCY 1 cut(s) 38
EcoRI GAATTC 1 cut(s) 538
EcoRII CCWGG 2 cut(s) 1077, 1356
EcoRV GATATC 1 cut(s) 949
EcoT14I CCWWGG 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 78
FaiI YATR 4 cut(s) 969, 1275, 1365, 1367
FaqI GGGAC 2 cut(s) 391, 1201
FauI CCCGC 2 cut(s) 358, 807
FokI GGATG 3 cut(s) 196, 710, 917
FspBI CTAG 3 cut(s) 59, 618, 1352
GlaI GCGC 2 cut(s) 356, 361
HaeIII GGCC 8 cut(s) 39, 93, 321, 399, 504, 597, 607, 1077
HhaI GCGC 2 cut(s) 357, 362
Hin6I GCGC 2 cut(s) 355, 360
HinP1I GCGC 2 cut(s) 355, 360
HinfI GANTC 9 cut(s) 128, 161, 170, 200, 346, 391, 496, 719, 1193
Hpy166II GTNNAC 3 cut(s) 223, 294, 746
Hpy188I TCNGA 6 cut(s) 169, 191, 351, 544, 724, 1069
Hpy188III TCNNGA 7 cut(s) 25, 85, 310, 675, 716, 911, 1329
Hpy8I GTNNAC 3 cut(s) 223, 294, 746
Hpy99I CGWCG 4 cut(s) 269, 275, 301, 320
HpyAV CCTTC 9 cut(s) 320, 336, 523, 821, 913, 1048, 1202, 1336, 1375
HpyCH4III ACNGT 1 cut(s) 1100
HpyCH4IV ACGT 2 cut(s) 296, 372
HpyCH4V TGCA 2 cut(s) 732, 802
HpyF10VI GCNNNNNNNGC 5 cut(s) 28, 247, 256, 488, 808
HpyF3I CTNAG 4 cut(s) 260, 492, 765, 1347
HpySE526I ACGT 2 cut(s) 296, 372
HspAI GCGC 2 cut(s) 355, 360
Kpn2I TCCGGA 4 cut(s) 84, 715, 910, 1328
KspI CCGCGG 2 cut(s) 106, 815
Kzo9I GATC 6 cut(s) 74, 87, 186, 282, 300, 312
LmnI GCTCC 6 cut(s) 4, 256, 330, 913, 1143, 1231
Lsp1109I GCAGC 4 cut(s) 370, 491, 1022, 1100
LweI GCATC 2 cut(s) 18, 967
MaeI CTAG 3 cut(s) 59, 618, 1352
MaeII ACGT 2 cut(s) 296, 372
MalI GATC 6 cut(s) 76, 89, 188, 284, 302, 314
MboI GATC 6 cut(s) 74, 87, 186, 282, 300, 312
MflI RGATCY 1 cut(s) 74
MluCI AATT 8 cut(s) 437, 468, 538, 545, 727, 861, 933, 991
MlyI GAGTC 5 cut(s) 122, 155, 194, 400, 1187
MmeI TCCRAC 4 cut(s) 231, 234, 1087, 1121
MroI TCCGGA 4 cut(s) 84, 715, 910, 1328
MseI TTAA 5 cut(s) 414, 879, 1203, 1302, 1399
MspA1I CMGCKG 2 cut(s) 105, 814
MspR9I CCNGG 5 cut(s) 72, 95, 599, 1079, 1358
MteI GCGCNGCGC 1 cut(s) 358
MvaI CCWGG 2 cut(s) 1079, 1358
MvnI CGCG 4 cut(s) 105, 357, 362, 814
MwoI GCNNNNNNNGC 5 cut(s) 28, 247, 256, 488, 808
NciI CCSGG 3 cut(s) 72, 95, 599
NdeII GATC 6 cut(s) 74, 87, 186, 282, 300, 312
NmeAIII GCCGAG 1 cut(s) 633
PaeR7I CTCGAG 1 cut(s) 23
PcsI WCGNNNNNNNCGW 4 cut(s) 96, 165, 216, 321
PfeI GAWTC 4 cut(s) 170, 346, 496, 719
PfoI TCCNGGA 1 cut(s) 1356
PinAI ACCGGT 1 cut(s) 484
PleI GAGTC 5 cut(s) 122, 155, 194, 399, 1187
PpsI GAGTC 5 cut(s) 122, 155, 194, 399, 1187
Psp6I CCWGG 2 cut(s) 1077, 1356
PspGI CCWGG 2 cut(s) 1077, 1356
PspPI GGNCC 9 cut(s) 38, 82, 397, 502, 595, 866, 938, 1065, 1075
PsuI RGATCY 1 cut(s) 74
RsaI GTAC 2 cut(s) 65, 293
RsaNI GTAC 2 cut(s) 64, 292
SacII CCGCGG 2 cut(s) 106, 815
SaqAI TTAA 5 cut(s) 414, 879, 1203, 1302, 1399
Sau3AI GATC 6 cut(s) 74, 87, 186, 282, 300, 312
Sau96I GGNCC 9 cut(s) 38, 82, 397, 502, 595, 866, 938, 1065, 1075
SchI GAGTC 5 cut(s) 122, 155, 194, 400, 1187
ScrFI CCNGG 5 cut(s) 72, 95, 599, 1079, 1358
SfaNI GCATC 2 cut(s) 18, 967
Sfr274I CTCGAG 1 cut(s) 23
Sfr303I CCGCGG 2 cut(s) 106, 815
SgrBI CCGCGG 2 cut(s) 106, 815
SinI GGWCC 4 cut(s) 82, 866, 938, 1065
SlaI CTCGAG 1 cut(s) 23
SmlI CTYRAG 3 cut(s) 17, 23, 236
SmoI CTYRAG 3 cut(s) 17, 23, 236
Sse9I AATT 8 cut(s) 437, 468, 538, 545, 727, 861, 933, 991
SspMI CTAG 3 cut(s) 59, 618, 1352
StyD4I CCNGG 5 cut(s) 70, 93, 597, 1077, 1356
StyI CCWWGG 1 cut(s) 78
TaaI ACNGT 1 cut(s) 1100
TaiI ACGT 2 cut(s) 299, 375
TaqI TCGA 7 cut(s) 24, 159, 198, 299, 315, 429, 674
TasI AATT 8 cut(s) 437, 468, 538, 545, 727, 861, 933, 991
TatI WGTACW 1 cut(s) 291
TauI GCSGC 6 cut(s) 108, 360, 365, 607, 814, 842
TfiI GAWTC 4 cut(s) 170, 346, 496, 719
Tru1I TTAA 5 cut(s) 414, 879, 1203, 1302, 1399
Tru9I TTAA 5 cut(s) 414, 879, 1203, 1302, 1399
TscAI CASTG 2 cut(s) 739, 1138
TseI GCWGC 4 cut(s) 383, 479, 1010, 1088
TspDTI ATGAA 1 cut(s) 1017
TspGWI ACGGA 2 cut(s) 225, 295
TspRI CASTG 2 cut(s) 739, 1138
VpaK11BI GGWCC 4 cut(s) 82, 866, 938, 1065
XapI RAATTY 2 cut(s) 538, 991
XhoI CTCGAG 1 cut(s) 23
XspI CTAG 3 cut(s) 59, 618, 1352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.