Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028516.1

Orthogroup ID

OG0002999

Physical Location & Seq

Genomic Coordinates Reverse (-)

3105 .. 4205

Gene Structure 1101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028516.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

atgtgggtggaaccaaaaaggcccgagcattacttgctcggagcatggaagacgtctcaaacctttacaacagactcgggagcaatttcgacatcactagattctggcgtttccctccgaaagaaaggcatttcaaagatgctggaccctttagctctcaagctcgaaatgctcaaaggcccacgtgagggagaaaccctagagtaccgacccagatccaaggtccgaatcggccgggtcgtccgcggcaacaacctcgccatcaaagactccggcatttccaccaaccacctcatcatcgacttcgaatcgggtaaatggatgatccgagacctcgactcctccaatggaaccatcgtaaaagacaccaagctcaacccggacacgccgttggagctgaacgacggcgacgagataaagatcggggagtacacgtcgatctccgtcaagatcgaccgccacgaagggagccggttgagaaggaatcccaggcgcggcgcggttcagggcctcagatgtaggaaggaagagaattctgaattggagagagagggagaggaaattgaggtggtagagaagccgaagaggaaagctagggttttgaagagtgaggttgctgtgtcggaagtgagttccagagatgtggaagctgtggttccggatttggagacttgcagggggaggaagaggaagaatgtgcaacaagtgccgctcatgtgtgagaaagataatgttgtggcggagaaagattcgggagaaattggtcccgttggtattaatggcgataaaggggatgactgtaatgtgggagcgggtggcgataaggttgaaagtggtagtaggagctgttttggtcttagtggtgctaagaatgttgataaaaaggggaatggttctggtgttaaacaaggtttgggaaagatttggcaggagccagatttggagaagatgactttggatgattggtttgattatgtgcaagtttctttgccgaaaggggttaatgatgagattgacaagatttgtgccggaatgagagacaaggctaagctagtccaggagtatatagcacaacacaagaaggaaaagtgtcacagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

366

Amino Acids

40.61

Weight (kDa)

8.32

Isoelectric Point (pI)

30.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14490
fragaria_vesca	FvH4_4g02980 FvH4_4g02980 FvH4_4g02980 FvH4_4g02980
malus_domestica	MD13G1205500.v1.1 MD16G1211500.v1.1
prunus_persica	Prupe.1G033600_v2.0.a1
pyrus_communis	pycom13g17820 pycom16g17730
rosa_chinensis	RchiOBHm_Chr4g0391131 RchiOBHm_Chr7g0211851 RchiOBHm_Chr7g0224291
rosa_laevigata	RLG00000009886
rosa_multiflora	Rmu_co8378449.1_g000001 Rmu_sc0001824.1_g000046 Rmu_sc0008872.1_g000006 Rmu_sc0009005.1_g000005 Rmu_sc0009448.1_g000001 Rmu_sc0028516.1_g000002 Rmu_sc0030074.1_g000001 Rmu_sc0032072.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247360 Rroxscaffold_5G00336920
rosa_rugosa	Rorug03G0334400
rosa_samantha	Rh4AG034800 Rh4BG030000 Rh4CG038600 Rh4DG032000 Rh4DG032700 Rh7AG262000 Rh7AG381100 Rh7BG255700 Rh7CG400500 Rh7DG268500 Rh7DG367500
rosa_wichuraiana	Rw4G002710 Rw7G031100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	56
AccBSI	CCGCTC	2 cut(s)	712, 812
AccII	CGCG	3 cut(s)	246, 495, 500
AccIII	TCCGGA	1 cut(s)	658
AciI	CCGC	8 cut(s)	244, 246, 457, 495, 500, 710, 740, 812
AclWI	GGATC	2 cut(s)	210, 319
AcoI	YGGCCR	1 cut(s)	232
AcsI	RAATTY	1 cut(s)	532
AcvI	CACGTG	1 cut(s)	185
AcyI	GRCGYC	1 cut(s)	53
AfaI	GTAC	2 cut(s)	206, 431
AfiI	CCNNNNNNNGG	3 cut(s)	187, 188, 494
AflIII	ACRYGT	1 cut(s)	432
AgsI	TTSAA	3 cut(s)	135, 604, 830
AjiI	CACGTC	1 cut(s)	435
AjnI	CCWGG	2 cut(s)	488, 1056
AjuI	GAANNNNNNNTTGG	4 cut(s)	524, 556, 938, 970
AluBI	AGCT	8 cut(s)	155, 163, 373, 397, 593, 650, 846, 1051
AluI	AGCT	8 cut(s)	155, 163, 373, 397, 593, 650, 846, 1051
Alw26I	GTCTC	4 cut(s)	60, 324, 662, 1032
AlwI	GGATC	2 cut(s)	210, 319
Ama87I	CYCGRG	2 cut(s)	23, 76
Aor13HI	TCCGGA	1 cut(s)	658
AoxI	GGCC	4 cut(s)	20, 178, 232, 508
ApoI	RAATTY	1 cut(s)	532
AseI	ATTAAT	1 cut(s)	777
AspLEI	GCGC	2 cut(s)	495, 500
AspS9I	GGNCC	6 cut(s)	21, 145, 179, 223, 508, 764
AsuC2I	CCSGG	2 cut(s)	236, 380
AsuII	TTCGAA	1 cut(s)	306
AvaI	CYCGRG	2 cut(s)	23, 76
AvaII	GGWCC	3 cut(s)	145, 223, 764
BbrPI	CACGTG	1 cut(s)	185
BbsI	GAAGAC	1 cut(s)	56
BccI	CCATC	2 cut(s)	269, 362
BceAI	ACGGC	2 cut(s)	373, 421
BcgI	CGANNNNNNTGC	2 cut(s)	238, 272
BciT130I	CCWGG	2 cut(s)	490, 1058
BcnI	CCSGG	2 cut(s)	236, 380
BcoDI	GTCTC	4 cut(s)	60, 324, 662, 1032
BfaI	CTAG	4 cut(s)	98, 200, 594, 1052
BisI	GCNGC	3 cut(s)	247, 496, 710
BlpI	GCTNAGC	1 cut(s)	1047
BlsI	GCNGC	3 cut(s)	248, 497, 711
Bme1390I	CCNGG	4 cut(s)	236, 380, 490, 1058
Bme18I	GGWCC	3 cut(s)	145, 223, 764
BmeT110I	CYCGRG	2 cut(s)	23, 76
BmgBI	CACGTC	1 cut(s)	435
BmgT120I	GGNCC	6 cut(s)	21, 145, 179, 223, 508, 764
BmiI	GGNNCC	7 cut(s)	12, 147, 352, 470, 657, 766, 933
BmrFI	CCNGG	4 cut(s)	236, 380, 490, 1058
BmsI	GCATC	1 cut(s)	129
BpiI	GAAGAC	1 cut(s)	56
Bpu1102I	GCTNAGC	1 cut(s)	1047
Bpu14I	TTCGAA	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	143
BpuMI	CCSGG	2 cut(s)	236, 380
BsaAI	YACGTR	1 cut(s)	185
BsaBI	GATNNNNATC	1 cut(s)	419
BsaHI	GRCGYC	1 cut(s)	53
BsaI	GGTCTC	1 cut(s)	324
BsaJI	CCNNGG	3 cut(s)	219, 244, 488
BsaWI	WCCGGW	1 cut(s)	658
BsaXI	ACNNNNNCTCC	4 cut(s)	323, 353, 419, 449
Bsc4I	CCNNNNNNNGG	3 cut(s)	187, 188, 494
Bse118I	RCCGGY	1 cut(s)	471
Bse8I	GATNNNNATC	1 cut(s)	419
BseAI	TCCGGA	1 cut(s)	658
BseBI	CCWGG	2 cut(s)	490, 1058
BseDI	CCNNGG	3 cut(s)	219, 244, 488
BseGI	GGATG	3 cut(s)	327, 799, 964
BseJI	GATNNNNATC	1 cut(s)	419
BseLI	CCNNNNNNNGG	3 cut(s)	187, 188, 494
BseMII	CTCAG	1 cut(s)	526
BseRI	GAGGAG	1 cut(s)	331
BseX3I	CGGCCG	1 cut(s)	232
Bsh1236I	CGCG	3 cut(s)	246, 495, 500
Bsh1285I	CGRYCG	2 cut(s)	235, 457
BshFI	GGCC	4 cut(s)	22, 180, 234, 510
BsiEI	CGRYCG	2 cut(s)	235, 457
BsiHKCI	CYCGRG	2 cut(s)	23, 76
BsiSI	CCGG	6 cut(s)	235, 273, 380, 472, 659, 1029
BslFI	GGGAC	1 cut(s)	750
BslI	CCNNNNNNNGG	3 cut(s)	187, 188, 494
BsmAI	GTCTC	4 cut(s)	60, 324, 662, 1032
BsmBI	CGTCTC	1 cut(s)	60
BsmFI	GGGAC	1 cut(s)	750
BsnI	GGCC	4 cut(s)	22, 180, 234, 510
Bso31I	GGTCTC	1 cut(s)	324
BsoBI	CYCGRG	2 cut(s)	23, 76
Bsp119I	TTCGAA	1 cut(s)	306
Bsp13I	TCCGGA	1 cut(s)	658
Bsp143I	GATC	5 cut(s)	215, 324, 420, 438, 450
Bsp1720I	GCTNAGC	1 cut(s)	1047
BspACI	CCGC	8 cut(s)	244, 246, 457, 495, 500, 710, 740, 812
BspANI	GGCC	4 cut(s)	22, 180, 234, 510
BspCNI	CTCAG	1 cut(s)	525
BspEI	TCCGGA	1 cut(s)	658
BspFNI	CGCG	3 cut(s)	246, 495, 500
BspLI	GGNNCC	7 cut(s)	12, 147, 352, 470, 657, 766, 933
BspPI	GGATC	2 cut(s)	210, 319
BspT104I	TTCGAA	1 cut(s)	306
BspTNI	GGTCTC	1 cut(s)	324
BsrBI	CCGCTC	2 cut(s)	712, 812
BsrFI	RCCGGY	1 cut(s)	471
BssAI	RCCGGY	1 cut(s)	471
BssECI	CCNNGG	3 cut(s)	219, 244, 488
BssMI	GATC	5 cut(s)	215, 324, 420, 438, 450
BssNI	GRCGYC	1 cut(s)	53
BssT1I	CCWWGG	1 cut(s)	219
Bst2UI	CCWGG	2 cut(s)	490, 1058
Bst4CI	ACNGT	2 cut(s)	800, 1097
Bst6I	CTCTTC	4 cut(s)	522, 578, 599, 680
BstACI	GRCGYC	1 cut(s)	53
BstAPI	GCANNNNNTGC	2 cut(s)	34, 706
BstBAI	YACGTR	1 cut(s)	185
BstBI	TTCGAA	1 cut(s)	306
BstDEI	CTNAG	4 cut(s)	512, 857, 867, 1047
BstDSI	CCRYGG	1 cut(s)	244
BstF5I	GGATG	3 cut(s)	327, 799, 964
BstFNI	CGCG	3 cut(s)	246, 495, 500
BstHHI	GCGC	2 cut(s)	495, 500
BstKTI	GATC	5 cut(s)	218, 327, 423, 441, 453
BstMAI	GTCTC	4 cut(s)	60, 324, 662, 1032
BstMBI	GATC	5 cut(s)	215, 324, 420, 438, 450
BstMCI	CGRYCG	2 cut(s)	235, 457
BstMWI	GCNNNNNNNGC	4 cut(s)	34, 169, 394, 706
BstNI	CCWGG	2 cut(s)	490, 1058
BstSCI	CCNGG	4 cut(s)	234, 378, 488, 1056
BstUI	CGCG	3 cut(s)	246, 495, 500
BstV2I	GAAGAC	1 cut(s)	56
BstX2I	RGATCY	1 cut(s)	215
BstXI	CCANNNNNNTGG	1 cut(s)	643
BstYI	RGATCY	1 cut(s)	215
BstZI	CGGCCG	1 cut(s)	232
BsuRI	GGCC	4 cut(s)	22, 180, 234, 510
BtgI	CCRYGG	1 cut(s)	244
BtrI	CACGTC	1 cut(s)	435
BtsCI	GGATG	3 cut(s)	327, 799, 964
CfoI	GCGC	2 cut(s)	495, 500
Cfr10I	RCCGGY	1 cut(s)	471
Cfr13I	GGNCC	6 cut(s)	21, 145, 179, 223, 508, 764
Cfr42I	CCGCGG	1 cut(s)	247
Csp6I	GTAC	2 cut(s)	205, 430
CviAII	CATG	2 cut(s)	45, 715
CviQI	GTAC	2 cut(s)	205, 430
DdeI	CTNAG	4 cut(s)	512, 857, 867, 1047
DpnI	GATC	5 cut(s)	217, 326, 422, 440, 452
DpnII	GATC	5 cut(s)	215, 324, 420, 438, 450
EaeI	YGGCCR	1 cut(s)	232
EagI	CGGCCG	1 cut(s)	232
Eam1104I	CTCTTC	4 cut(s)	522, 578, 599, 680
EarI	CTCTTC	4 cut(s)	522, 578, 599, 680
EciI	GGCGGA	1 cut(s)	755
EclXI	CGGCCG	1 cut(s)	232
Eco130I	CCWWGG	1 cut(s)	219
Eco31I	GGTCTC	1 cut(s)	324
Eco47I	GGWCC	3 cut(s)	145, 223, 764
Eco52I	CGGCCG	1 cut(s)	232
Eco72I	CACGTG	1 cut(s)	185
Eco88I	CYCGRG	2 cut(s)	23, 76
EcoO109I	RGGNCCY	1 cut(s)	508
EcoRI	GAATTC	1 cut(s)	532
EcoRII	CCWGG	2 cut(s)	488, 1056
EcoT14I	CCWWGG	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	219
Esp3I	CGTCTC	1 cut(s)	60
FaeI	CATG	2 cut(s)	48, 718
FaiI	YATR	5 cut(s)	46, 716, 975, 1065, 1067
FaqI	GGGAC	1 cut(s)	750
FatI	CATG	2 cut(s)	44, 714
FauI	CCCGC	1 cut(s)	805
Fnu4HI	GCNGC	3 cut(s)	247, 496, 710
FokI	GGATG	3 cut(s)	334, 806, 971
Fsp4HI	GCNGC	3 cut(s)	247, 496, 710
FspBI	CTAG	4 cut(s)	98, 200, 594, 1052
GlaI	GCGC	2 cut(s)	494, 499
GluI	GCNGC	3 cut(s)	247, 496, 710
HaeIII	GGCC	4 cut(s)	22, 180, 234, 510
HapII	CCGG	6 cut(s)	235, 273, 380, 472, 659, 1029
HhaI	GCGC	2 cut(s)	495, 500
Hin1I	GRCGYC	1 cut(s)	53
Hin1II	CATG	2 cut(s)	48, 718
Hin6I	GCGC	2 cut(s)	493, 498
HinP1I	GCGC	2 cut(s)	493, 498
HinfI	GANTC	8 cut(s)	74, 101, 228, 269, 308, 338, 484, 749
HpaII	CCGG	6 cut(s)	235, 273, 380, 472, 659, 1029
Hpy166II	GTNNAC	1 cut(s)	432
Hpy188I	TCNGA	7 cut(s)	41, 119, 227, 329, 515, 538, 625
Hpy188III	TCNNGA	5 cut(s)	78, 448, 636, 659, 753
Hpy8I	GTNNAC	1 cut(s)	432
Hpy99I	CGWCG	3 cut(s)	407, 413, 439
HpyAV	CCTTC	4 cut(s)	458, 474, 517, 1075
HpyCH4III	ACNGT	2 cut(s)	800, 1097
HpyCH4IV	ACGT	3 cut(s)	53, 184, 434
HpyCH4V	TGCA	3 cut(s)	675, 700, 979
HpyF10VI	GCNNNNNNNGC	4 cut(s)	34, 169, 394, 706
HpyF3I	CTNAG	4 cut(s)	512, 857, 867, 1047
HpySE526I	ACGT	3 cut(s)	53, 184, 434
Hsp92I	GRCGYC	1 cut(s)	53
Hsp92II	CATG	2 cut(s)	48, 718
HspAI	GCGC	2 cut(s)	493, 498
Kpn2I	TCCGGA	1 cut(s)	658
KspI	CCGCGG	1 cut(s)	247
Kzo9I	GATC	5 cut(s)	215, 324, 420, 438, 450
LmnI	GCTCC	7 cut(s)	41, 80, 394, 468, 809, 843, 931
LweI	GCATC	1 cut(s)	129
MaeI	CTAG	4 cut(s)	98, 200, 594, 1052
MaeII	ACGT	3 cut(s)	53, 184, 434
MaeIII	GTNAC	1 cut(s)	1091
MalI	GATC	5 cut(s)	217, 326, 422, 440, 452
MbiI	CCGCTC	2 cut(s)	712, 812
MboI	GATC	5 cut(s)	215, 324, 420, 438, 450
MboII	GAAGA	7 cut(s)	61, 539, 595, 616, 697, 703, 958
MflI	RGATCY	1 cut(s)	215
MluCI	AATT	5 cut(s)	84, 532, 539, 561, 759
MlyI	GAGTC	3 cut(s)	68, 263, 332
MmeI	TCCRAC	2 cut(s)	372, 603
MroI	TCCGGA	1 cut(s)	658
MseI	TTAA	4 cut(s)	777, 903, 1002, 1099
MspA1I	CMGCKG	1 cut(s)	246
MspI	CCGG	6 cut(s)	235, 273, 380, 472, 659, 1029
MspR9I	CCNGG	4 cut(s)	236, 380, 490, 1058
MteI	GCGCNGCGC	1 cut(s)	496
MvaI	CCWGG	2 cut(s)	490, 1058
MvnI	CGCG	3 cut(s)	246, 495, 500
MwoI	GCNNNNNNNGC	4 cut(s)	34, 169, 394, 706
NciI	CCSGG	2 cut(s)	236, 380
NdeII	GATC	5 cut(s)	215, 324, 420, 438, 450
NlaIII	CATG	2 cut(s)	48, 718
NlaIV	GGNNCC	7 cut(s)	12, 147, 352, 470, 657, 766, 933
NmuCI	GTSAC	1 cut(s)	1091
NspV	TTCGAA	1 cut(s)	306
PcsI	WCGNNNNNNNCGW	3 cut(s)	237, 408, 459
PfeI	GAWTC	5 cut(s)	101, 228, 308, 484, 749
PfoI	TCCNGGA	1 cut(s)	1056
PkrI	GCNGC	3 cut(s)	248, 497, 711
PleI	GAGTC	3 cut(s)	68, 263, 332
PmaCI	CACGTG	1 cut(s)	185
PmlI	CACGTG	1 cut(s)	185
PpsI	GAGTC	3 cut(s)	68, 263, 332
Ppu21I	YACGTR	1 cut(s)	185
PshBI	ATTAAT	1 cut(s)	777
Psp6I	CCWGG	2 cut(s)	488, 1056
PspCI	CACGTG	1 cut(s)	185
PspGI	CCWGG	2 cut(s)	488, 1056
PspN4I	GGNNCC	7 cut(s)	12, 147, 352, 470, 657, 766, 933
PspPI	GGNCC	6 cut(s)	21, 145, 179, 223, 508, 764
PsuI	RGATCY	1 cut(s)	215
RsaI	GTAC	2 cut(s)	206, 431
RsaNI	GTAC	2 cut(s)	205, 430
SacII	CCGCGG	1 cut(s)	247
SaqAI	TTAA	4 cut(s)	777, 903, 1002, 1099
SatI	GCNGC	3 cut(s)	247, 496, 710
Sau3AI	GATC	5 cut(s)	215, 324, 420, 438, 450
Sau96I	GGNCC	6 cut(s)	21, 145, 179, 223, 508, 764
SchI	GAGTC	3 cut(s)	68, 263, 332
ScrFI	CCNGG	4 cut(s)	236, 380, 490, 1058
SfaNI	GCATC	1 cut(s)	129
Sfr303I	CCGCGG	1 cut(s)	247
SfuI	TTCGAA	1 cut(s)	306
SgrBI	CCGCGG	1 cut(s)	247
SinI	GGWCC	3 cut(s)	145, 223, 764
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	5 cut(s)	84, 532, 539, 561, 759
SsiI	CCGC	8 cut(s)	244, 246, 457, 495, 500, 710, 740, 812
SspMI	CTAG	4 cut(s)	98, 200, 594, 1052
StyD4I	CCNGG	4 cut(s)	234, 378, 488, 1056
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	2 cut(s)	800, 1097
TaiI	ACGT	3 cut(s)	56, 187, 437
TaqI	TCGA	7 cut(s)	89, 165, 300, 306, 336, 437, 453
TasI	AATT	5 cut(s)	84, 532, 539, 561, 759
TatI	WGTACW	1 cut(s)	429
TauI	GCSGC	3 cut(s)	249, 498, 712
TfiI	GAWTC	5 cut(s)	101, 228, 308, 484, 749
Tru1I	TTAA	4 cut(s)	777, 903, 1002, 1099
Tru9I	TTAA	4 cut(s)	777, 903, 1002, 1099
TseFI	GTSAC	1 cut(s)	1091
Tsp45I	GTSAC	1 cut(s)	1091
TspGWI	ACGGA	1 cut(s)	433
VpaK11BI	GGWCC	3 cut(s)	145, 223, 764
VspI	ATTAAT	1 cut(s)	777
XapI	RAATTY	1 cut(s)	532
XspI	CTAG	4 cut(s)	98, 200, 594, 1052
ZraI	GACGTC	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.