Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030074.1

Orthogroup ID

OG0002999

Physical Location & Seq

Genomic Coordinates Reverse (-)

121 .. 1308

Gene Structure 1188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030074.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

atgagctttgcaaactctaatattattgttatcagcccaactttgctactggattggatgatcattcttgttatcagcccaactttgctgccagcccaacctcagtacctggcaggtagggagggcgggcagaacggtccgaatcggccgggtcgtccgcggcaacaacctcgccatcaaagactccggcatttccaccaaccacctcatcatccactccgactccgaatcggggggcaatggatgatccgagacctcgactcctccaacggaaccgtcgtcaacgacaccaagctcaagccgccggacacgccgctggagctgaacgacggcgacgagatcaagatcggggagtacacgtcgatctccgtccacaggttgagaaggaatccgaggcgcggcgcggttgtggagaattctgaactggagagagagggagaggaaattgaggtggtagagaagccgaagaggggccggggccggccgaggggggaagaggaagataatgtgcaacaagtgccgctcatgtgtgagaaagataatgttgtgggagagagtggcaatgatagtgagaattcgggccatgcagaggcagccactgactgtaatgttggagtgggtggcgatgaggttgaaagtggtagtaggagctgttttggtgctaagaatgttgataaaaaggggaatggttctggtgttaaacaaggttgtttgggaaagatttggcaggagccagatttggagaagatgactttggatgattggttttattatgtgcaagtttctttgccgataggggttaatgatgagattgacaagatttgtgccggaatgagacacaaggctaagctagtccacgagtatatagcacaacacaacaaggacaagtgtcacagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

299

Amino Acids

33.37

Weight (kDa)

6.14

Isoelectric Point (pI)

48.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14490
fragaria_vesca	FvH4_4g02980 FvH4_4g02980 FvH4_4g02980 FvH4_4g02980
malus_domestica	MD13G1205500.v1.1 MD16G1211500.v1.1
prunus_persica	Prupe.1G033600_v2.0.a1
pyrus_communis	pycom13g17820 pycom16g17730
rosa_chinensis	RchiOBHm_Chr4g0391131 RchiOBHm_Chr7g0211851 RchiOBHm_Chr7g0224291
rosa_laevigata	RLG00000009886
rosa_multiflora	Rmu_co8378449.1_g000001 Rmu_sc0001824.1_g000046 Rmu_sc0008872.1_g000006 Rmu_sc0009005.1_g000005 Rmu_sc0009448.1_g000001 Rmu_sc0028516.1_g000002 Rmu_sc0030074.1_g000001 Rmu_sc0032072.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247360 Rroxscaffold_5G00336920
rosa_rugosa	Rorug03G0334400
rosa_samantha	Rh4AG034800 Rh4BG030000 Rh4CG038600 Rh4DG032000 Rh4DG032700 Rh7AG262000 Rh7AG381100 Rh7BG255700 Rh7CG400500 Rh7DG268500 Rh7DG367500
rosa_wichuraiana	Rw4G002710 Rw7G031100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	104
AccBSI	CCGCTC	1 cut(s)	523
AccII	CGCG	3 cut(s)	160, 399, 404
AciI	CCGC	8 cut(s)	126, 158, 160, 302, 314, 399, 404, 521
AclWI	GGATC	1 cut(s)	241
AcoI	YGGCCR	2 cut(s)	146, 482
AcsI	RAATTY	2 cut(s)	415, 574
AfaI	GTAC	2 cut(s)	107, 356
AfiI	CCNNNNNNNGG	6 cut(s)	232, 375, 398, 470, 487, 589
AflIII	ACRYGT	1 cut(s)	357
AgsI	TTSAA	1 cut(s)	635
AjiI	CACGTC	1 cut(s)	360
AjnI	CCWGG	1 cut(s)	108
AjuI	GAANNNNNNNTTGG	2 cut(s)	737, 769
AluBI	AGCT	5 cut(s)	6, 295, 322, 651, 850
AluI	AGCT	5 cut(s)	6, 295, 322, 651, 850
Alw26I	GTCTC	2 cut(s)	246, 829
AlwI	GGATC	1 cut(s)	241
AlwNI	CAGNNNCTG	2 cut(s)	109, 599
AoxI	GGCC	5 cut(s)	146, 472, 478, 482, 580
ApeKI	GCWGC	2 cut(s)	88, 593
ApoI	RAATTY	2 cut(s)	415, 574
AspLEI	GCGC	2 cut(s)	399, 404
AspS9I	GGNCC	4 cut(s)	137, 472, 478, 580
AsuC2I	CCSGG	2 cut(s)	150, 476
AvaII	GGWCC	1 cut(s)	137
BaeI	ACNNNNGTAYC	2 cut(s)	89, 122
BauI	CACGAG	1 cut(s)	857
BbvI	GCAGC	2 cut(s)	75, 605
BccI	CCATC	1 cut(s)	183
BceAI	ACGGC	1 cut(s)	346
BcgI	CGANNNNNNTGC	2 cut(s)	152, 186
BciT130I	CCWGG	1 cut(s)	110
BclI	TGATCA	1 cut(s)	60
BcnI	CCSGG	2 cut(s)	150, 476
BcoDI	GTCTC	2 cut(s)	246, 829
BfaI	CTAG	1 cut(s)	851
BfuAI	ACCTGC	1 cut(s)	104
BisI	GCNGC	7 cut(s)	89, 161, 302, 314, 400, 521, 594
BlpI	GCTNAGC	1 cut(s)	846
BlsI	GCNGC	7 cut(s)	90, 162, 303, 315, 401, 522, 595
Bme1390I	CCNGG	3 cut(s)	110, 150, 476
Bme18I	GGWCC	1 cut(s)	137
BmgBI	CACGTC	1 cut(s)	360
BmgT120I	GGNCC	4 cut(s)	137, 472, 478, 580
BmiI	GGNNCC	4 cut(s)	274, 473, 479, 732
BmrFI	CCNGG	3 cut(s)	110, 150, 476
BoxI	GACNNNNGTC	1 cut(s)	888
BpmI	CTGGAG	2 cut(s)	338, 446
Bpu1102I	GCTNAGC	1 cut(s)	846
BpuEI	CTTGAG	1 cut(s)	281
BpuMI	CCSGG	2 cut(s)	150, 476
BsaBI	GATNNNNATC	1 cut(s)	344
BsaI	GGTCTC	1 cut(s)	246
BsaJI	CCNNGG	4 cut(s)	158, 392, 475, 485
BsaXI	ACNNNNNCTCC	6 cut(s)	207, 237, 245, 275, 344, 374
Bsc4I	CCNNNNNNNGG	6 cut(s)	232, 375, 398, 470, 487, 589
Bse118I	RCCGGY	1 cut(s)	480
Bse1I	ACTGG	2 cut(s)	54, 429
Bse3DI	GCAATG	2 cut(s)	245, 568
Bse8I	GATNNNNATC	1 cut(s)	344
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	4 cut(s)	158, 392, 475, 485
BseGI	GGATG	4 cut(s)	63, 211, 249, 763
BseJI	GATNNNNATC	1 cut(s)	344
BseLI	CCNNNNNNNGG	6 cut(s)	232, 375, 398, 470, 487, 589
BseMI	GCAATG	2 cut(s)	245, 568
BseMII	CTCAG	1 cut(s)	116
BseNI	ACTGG	2 cut(s)	54, 429
BseRI	GAGGAG	1 cut(s)	253
BseX3I	CGGCCG	2 cut(s)	146, 482
BseXI	GCAGC	2 cut(s)	75, 605
Bsh1236I	CGCG	3 cut(s)	160, 399, 404
Bsh1285I	CGRYCG	2 cut(s)	149, 485
BshFI	GGCC	5 cut(s)	148, 474, 480, 484, 582
BsiEI	CGRYCG	2 cut(s)	149, 485
BsiSI	CCGG	6 cut(s)	149, 187, 305, 475, 481, 828
BslI	CCNNNNNNNGG	6 cut(s)	232, 375, 398, 470, 487, 589
BsmAI	GTCTC	2 cut(s)	246, 829
BsnI	GGCC	5 cut(s)	148, 474, 480, 484, 582
Bso31I	GGTCTC	1 cut(s)	246
Bsp143I	GATC	5 cut(s)	60, 246, 339, 345, 363
Bsp1720I	GCTNAGC	1 cut(s)	846
BspACI	CCGC	8 cut(s)	126, 158, 160, 302, 314, 399, 404, 521
BspANI	GGCC	5 cut(s)	148, 474, 480, 484, 582
BspCNI	CTCAG	1 cut(s)	115
BspFNI	CGCG	3 cut(s)	160, 399, 404
BspLI	GGNNCC	4 cut(s)	274, 473, 479, 732
BspMI	ACCTGC	1 cut(s)	104
BspPI	GGATC	1 cut(s)	241
BspTNI	GGTCTC	1 cut(s)	246
BsrBI	CCGCTC	1 cut(s)	523
BsrDI	GCAATG	2 cut(s)	245, 568
BsrFI	RCCGGY	1 cut(s)	480
BsrI	ACTGG	2 cut(s)	54, 429
BssAI	RCCGGY	1 cut(s)	480
BssECI	CCNNGG	4 cut(s)	158, 392, 475, 485
BssMI	GATC	5 cut(s)	60, 246, 339, 345, 363
BssSI	CACGAG	1 cut(s)	857
Bst2BI	CACGAG	1 cut(s)	857
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	4 cut(s)	137, 277, 605, 896
Bst6I	CTCTTC	2 cut(s)	461, 489
BstAPI	GCANNNNNTGC	1 cut(s)	517
BstC8I	GCNNGC	3 cut(s)	93, 128, 482
BstDEI	CTNAG	3 cut(s)	102, 663, 846
BstDSI	CCRYGG	1 cut(s)	158
BstF5I	GGATG	4 cut(s)	63, 211, 249, 763
BstFNI	CGCG	3 cut(s)	160, 399, 404
BstHHI	GCGC	2 cut(s)	399, 404
BstKTI	GATC	5 cut(s)	63, 249, 342, 348, 366
BstMAI	GTCTC	2 cut(s)	246, 829
BstMBI	GATC	5 cut(s)	60, 246, 339, 345, 363
BstMCI	CGRYCG	2 cut(s)	149, 485
BstMWI	GCNNNNNNNGC	5 cut(s)	301, 310, 319, 517, 593
BstNI	CCWGG	1 cut(s)	110
BstPAI	GACNNNNGTC	1 cut(s)	888
BstSCI	CCNGG	3 cut(s)	108, 148, 474
BstUI	CGCG	3 cut(s)	160, 399, 404
BstV1I	GCAGC	2 cut(s)	75, 605
BstZI	CGGCCG	2 cut(s)	146, 482
BsuRI	GGCC	5 cut(s)	148, 474, 480, 484, 582
BtgI	CCRYGG	1 cut(s)	158
BtgZI	GCGATG	1 cut(s)	639
BtrI	CACGTC	1 cut(s)	360
BtsCI	GGATG	4 cut(s)	63, 211, 249, 763
BtsIMutI	CAGTG	1 cut(s)	597
BveI	ACCTGC	1 cut(s)	104
Cac8I	GCNNGC	3 cut(s)	93, 128, 482
CaiI	CAGNNNCTG	2 cut(s)	109, 599
CfoI	GCGC	2 cut(s)	399, 404
Cfr10I	RCCGGY	1 cut(s)	480
Cfr13I	GGNCC	4 cut(s)	137, 472, 478, 580
Cfr42I	CCGCGG	1 cut(s)	161
CpoI	CGGWCCG	1 cut(s)	137
Csp6I	GTAC	2 cut(s)	106, 355
CspI	CGGWCCG	1 cut(s)	137
CviAII	CATG	2 cut(s)	526, 584
CviQI	GTAC	2 cut(s)	106, 355
DdeI	CTNAG	3 cut(s)	102, 663, 846
DpnI	GATC	5 cut(s)	62, 248, 341, 347, 365
DpnII	GATC	5 cut(s)	60, 246, 339, 345, 363
EaeI	YGGCCR	2 cut(s)	146, 482
EagI	CGGCCG	2 cut(s)	146, 482
Eam1104I	CTCTTC	2 cut(s)	461, 489
EarI	CTCTTC	2 cut(s)	461, 489
EclXI	CGGCCG	2 cut(s)	146, 482
Eco31I	GGTCTC	1 cut(s)	246
Eco47I	GGWCC	1 cut(s)	137
Eco52I	CGGCCG	2 cut(s)	146, 482
EcoRI	GAATTC	2 cut(s)	415, 574
EcoRII	CCWGG	1 cut(s)	108
FaeI	CATG	2 cut(s)	529, 587
FaiI	YATR	5 cut(s)	527, 585, 774, 864, 866
FatI	CATG	2 cut(s)	525, 583
FauI	CCCGC	1 cut(s)	119
FbaI	TGATCA	1 cut(s)	60
Fnu4HI	GCNGC	7 cut(s)	89, 161, 302, 314, 400, 521, 594
FokI	GGATG	4 cut(s)	70, 198, 256, 770
FseI	GGCCGGCC	1 cut(s)	484
Fsp4HI	GCNGC	7 cut(s)	89, 161, 302, 314, 400, 521, 594
FspBI	CTAG	1 cut(s)	851
GlaI	GCGC	2 cut(s)	398, 403
GluI	GCNGC	7 cut(s)	89, 161, 302, 314, 400, 521, 594
GsuI	CTGGAG	2 cut(s)	338, 446
HaeIII	GGCC	5 cut(s)	148, 474, 480, 484, 582
HapII	CCGG	6 cut(s)	149, 187, 305, 475, 481, 828
HhaI	GCGC	2 cut(s)	399, 404
Hin1II	CATG	2 cut(s)	529, 587
Hin6I	GCGC	2 cut(s)	397, 402
HinP1I	GCGC	2 cut(s)	397, 402
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HinfI	GANTC	6 cut(s)	142, 183, 222, 228, 260, 388
HpaII	CCGG	6 cut(s)	149, 187, 305, 475, 481, 828
Hpy166II	GTNNAC	4 cut(s)	283, 357, 373, 856
Hpy188I	TCNGA	6 cut(s)	141, 221, 227, 251, 393, 421
Hpy188III	TCNNGA	1 cut(s)	343
Hpy8I	GTNNAC	4 cut(s)	283, 357, 373, 856
Hpy99I	CGWCG	4 cut(s)	281, 332, 338, 364
HpyAV	CCTTC	1 cut(s)	378
HpyCH4III	ACNGT	4 cut(s)	137, 277, 605, 896
HpyCH4IV	ACGT	1 cut(s)	359
HpyCH4V	TGCA	4 cut(s)	11, 511, 587, 778
HpyF10VI	GCNNNNNNNGC	5 cut(s)	301, 310, 319, 517, 593
HpyF3I	CTNAG	3 cut(s)	102, 663, 846
HpySE526I	ACGT	1 cut(s)	359
Hsp92II	CATG	2 cut(s)	529, 587
HspAI	GCGC	2 cut(s)	397, 402
KroI	GCCGGC	1 cut(s)	480
KroNI	GCCGGC	1 cut(s)	482
Ksp22I	TGATCA	1 cut(s)	60
KspI	CCGCGG	1 cut(s)	161
Kzo9I	GATC	5 cut(s)	60, 246, 339, 345, 363
LmnI	GCTCC	3 cut(s)	319, 648, 730
Lsp1109I	GCAGC	2 cut(s)	75, 605
MaeI	CTAG	1 cut(s)	851
MaeII	ACGT	1 cut(s)	359
MaeIII	GTNAC	1 cut(s)	890
MalI	GATC	5 cut(s)	62, 248, 341, 347, 365
MbiI	CCGCTC	1 cut(s)	523
MboI	GATC	5 cut(s)	60, 246, 339, 345, 363
MboII	GAAGA	4 cut(s)	478, 506, 512, 757
MluCI	AATT	3 cut(s)	415, 444, 574
MlyI	GAGTC	3 cut(s)	177, 216, 254
MmeI	TCCRAC	3 cut(s)	244, 291, 592
MroNI	GCCGGC	1 cut(s)	480
MseI	TTAA	3 cut(s)	699, 801, 898
MspA1I	CMGCKG	2 cut(s)	160, 316
MspI	CCGG	6 cut(s)	149, 187, 305, 475, 481, 828
MspR9I	CCNGG	3 cut(s)	110, 150, 476
MteI	GCGCNGCGC	1 cut(s)	400
MvaI	CCWGG	1 cut(s)	110
MvnI	CGCG	3 cut(s)	160, 399, 404
MwoI	GCNNNNNNNGC	5 cut(s)	301, 310, 319, 517, 593
NaeI	GCCGGC	1 cut(s)	482
NciI	CCSGG	2 cut(s)	150, 476
NdeII	GATC	5 cut(s)	60, 246, 339, 345, 363
NgoMIV	GCCGGC	1 cut(s)	480
NlaIII	CATG	2 cut(s)	529, 587
NlaIV	GGNNCC	4 cut(s)	274, 473, 479, 732
NmeAIII	GCCGAG	1 cut(s)	510
NmuCI	GTSAC	1 cut(s)	890
PcsI	WCGNNNNNNNCGW	3 cut(s)	151, 276, 333
PdiI	GCCGGC	1 cut(s)	482
PfeI	GAWTC	3 cut(s)	142, 228, 388
PkrI	GCNGC	7 cut(s)	90, 162, 303, 315, 401, 522, 595
PleI	GAGTC	3 cut(s)	177, 216, 254
PpsI	GAGTC	3 cut(s)	177, 216, 254
PshAI	GACNNNNGTC	1 cut(s)	888
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	4 cut(s)	274, 473, 479, 732
PspPI	GGNCC	4 cut(s)	137, 472, 478, 580
PstNI	CAGNNNCTG	2 cut(s)	109, 599
RigI	GGCCGGCC	1 cut(s)	484
RsaI	GTAC	2 cut(s)	107, 356
RsaNI	GTAC	2 cut(s)	106, 355
Rsr2I	CGGWCCG	1 cut(s)	137
RsrII	CGGWCCG	1 cut(s)	137
SacII	CCGCGG	1 cut(s)	161
SaqAI	TTAA	3 cut(s)	699, 801, 898
SatI	GCNGC	7 cut(s)	89, 161, 302, 314, 400, 521, 594
Sau3AI	GATC	5 cut(s)	60, 246, 339, 345, 363
Sau96I	GGNCC	4 cut(s)	137, 472, 478, 580
SchI	GAGTC	3 cut(s)	177, 216, 254
ScrFI	CCNGG	3 cut(s)	110, 150, 476
Sfr303I	CCGCGG	1 cut(s)	161
SgrBI	CCGCGG	1 cut(s)	161
SinI	GGWCC	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
Sse9I	AATT	3 cut(s)	415, 444, 574
SsiI	CCGC	8 cut(s)	126, 158, 160, 302, 314, 399, 404, 521
SspI	AATATT	1 cut(s)	22
SspMI	CTAG	1 cut(s)	851
StyD4I	CCNGG	3 cut(s)	108, 148, 474
TaaI	ACNGT	4 cut(s)	137, 277, 605, 896
TaiI	ACGT	1 cut(s)	362
TaqI	TCGA	2 cut(s)	258, 362
TasI	AATT	3 cut(s)	415, 444, 574
TatI	WGTACW	1 cut(s)	354
TauI	GCSGC	5 cut(s)	163, 304, 316, 402, 523
TfiI	GAWTC	3 cut(s)	142, 228, 388
Tru1I	TTAA	3 cut(s)	699, 801, 898
Tru9I	TTAA	3 cut(s)	699, 801, 898
TscAI	CASTG	1 cut(s)	604
TseFI	GTSAC	1 cut(s)	890
TseI	GCWGC	2 cut(s)	88, 593
Tsp45I	GTSAC	1 cut(s)	890
TspGWI	ACGGA	2 cut(s)	285, 358
TspRI	CASTG	1 cut(s)	604
VpaK11BI	GGWCC	1 cut(s)	137
XapI	RAATTY	2 cut(s)	415, 574
XspI	CTAG	1 cut(s)	851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.