pycom13g17820

FHA domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0002999
Physical Location & Seq
Reverse (-)
13720149 .. 13721132
984 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g17820.1

Sequence Viewer

Length: 984 bp
ATGGAGTCCTTAGCTCTCAACCTGAAAATGCTCCGAGGCCCGGGGTTTCATAATTGGAACGGTGACACCCGAAACTTCCGACCCGGATCCAAGGTCCGAATCGGCCGCGACGGTCGCTGCAACAACATCCCGATCAAAGACTCCGGCATTTCTTCCAAGCACCTCTCCATCGAGTCCGAATCGGGCAAATGGGTGCTCCGAGACCTCGAATCCTCAAACGGAACCCTTTTGAATGGCACCAATGTCCCCCCAAACACGCCGCTGGATCTCAACCACGGCGACGAAATCAAAATCGGCGAGTGCACTTCCATTGAGGTTAAGATCGATGGCTACGAAGAGAGCCGGCTGAGACGGAATCCGAGGCGTGTCGAGGAAATTGAGGTCAAGGGGAATCAGAAGAGGGGTCGACCGCCCAAAGCTAGGGTTTTGAAGAGTGAGGTTGCGGAGGAGAAGCCTGTGGAGGAAAAATCGACACGGCAAGTGAGTGTGAGGCAAACTCGGATCTCGAAGAATGAGGAGTTGGGGAAGATTGCAGAGAGCTCTTGTGTAGACACTGAAGGATTGCCGAAAAGGACACGTGGCGGTGTGAGGAGGGGGAAGAATGCACCAAAAGAGCAACCGGTGTGCGATAAACTTGGCAATGAAGCTTCAAAAGCGGTGAAATTGGAGGAAGAGAGACATGAGGAGGCGGATAGAGAGTTCAACGTTGGAGGAGAGAGTGGTGGAAAAGGTGAAAGTGGAAGTGGGAATGGCGAAAGGGTTGAAAATGGAAGCGGGAGTGGCATTAAGGGCTACAATGGAAGTGGGAGTGGTTCGGGTGTTAATGTGAGCTATGACTTGGAGAAGATGACGCTCGGGGAGTGGTTTGAGTTTTTGGAGAGCCATTTGCCAAAACAGATCATTGGTGAGACGGAGGAGGCACTTGTGGAAATGACAGAGAAAGCAAAGCGAATTCGGGAGCACATTGCGCAGGAGAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FHA

Protein Analysis

328

Amino Acids

36.11

Weight (kDa)

7.67

Isoelectric Point (pI)

48.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yop-YscD_cpl PF16697 29 - 101 4.3e-11 Inner membrane component of T3SS, cytoplasmic domain
FHA PF00498 32 - 99 1.7e-18 FHA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 969
AccB1I GGYRCC 1 cut(s) 236
AccI GTMKAC 2 cut(s) 406, 549
AccII CGCG 1 cut(s) 108
AciI CCGC 8 cut(s) 106, 260, 410, 443, 582, 656, 689, 774
AclI AACGTT 1 cut(s) 705
AclWI GGATC 4 cut(s) 81, 94, 273, 509
AcoI YGGCCR 1 cut(s) 103
AcsI RAATTY 1 cut(s) 951
AcuI CTGAAG 1 cut(s) 576
AcvI CACGTG 1 cut(s) 578
AfiI CCNNNNNNNGG 2 cut(s) 40, 420
AflIII ACRYGT 1 cut(s) 575
AgeI ACCGGT 1 cut(s) 619
AgsI TTSAA 5 cut(s) 232, 430, 651, 703, 764
AjuI GAANNNNNNNTTGG 2 cut(s) 503, 535
AloI GAACNNNNNNTCC 2 cut(s) 683, 715
AluBI AGCT 5 cut(s) 14, 419, 540, 647, 831
AluI AGCT 5 cut(s) 14, 419, 540, 647, 831
Alw21I GWGCWC 4 cut(s) 198, 305, 542, 963
Alw26I GTCTC 4 cut(s) 195, 343, 670, 902
Alw44I GTGCAC 1 cut(s) 301
AlwI GGATC 4 cut(s) 81, 94, 273, 509
Ama87I CYCGRG 2 cut(s) 40, 854
AoxI GGCC 2 cut(s) 37, 103
ApaLI GTGCAC 1 cut(s) 301
ApeKI GCWGC 1 cut(s) 117
ApoI RAATTY 1 cut(s) 951
AsiGI ACCGGT 1 cut(s) 619
AspLEI GCGC 1 cut(s) 970
AspS9I GGNCC 2 cut(s) 38, 94
AsuC2I CCSGG 3 cut(s) 41, 42, 84
AsuHPI GGTGA 4 cut(s) 74, 670, 743, 917
AvaI CYCGRG 2 cut(s) 40, 854
AvaII GGWCC 1 cut(s) 94
BaeGI GKGCMC 1 cut(s) 305
BamHI GGATCC 1 cut(s) 86
BanI GGYRCC 1 cut(s) 236
BanII GRGCYC 1 cut(s) 542
BbrPI CACGTG 1 cut(s) 578
Bbv12I GWGCWC 4 cut(s) 198, 305, 542, 963
BbvI GCAGC 1 cut(s) 104
BccI CCATC 2 cut(s) 176, 320
BceAI ACGGC 2 cut(s) 292, 491
BcnI CCSGG 3 cut(s) 41, 42, 84
BcoDI GTCTC 4 cut(s) 195, 343, 670, 902
BfaI CTAG 1 cut(s) 420
BisI GCNGC 3 cut(s) 106, 118, 260
BlsI GCNGC 3 cut(s) 107, 119, 261
Bme1390I CCNGG 3 cut(s) 41, 42, 84
Bme18I GGWCC 1 cut(s) 94
BmeT110I CYCGRG 2 cut(s) 40, 854
BmgT120I GGNCC 2 cut(s) 38, 94
BmiI GGNNCC 3 cut(s) 88, 223, 238
BmrFI CCNGG 3 cut(s) 41, 42, 84
BplI GAGNNNNNCTC 2 cut(s) 481, 513
Bpu10I CCTNAGC 1 cut(s) 10
BpuMI CCSGG 3 cut(s) 41, 42, 84
Bsa29I ATCGAT 1 cut(s) 324
BsaAI YACGTR 1 cut(s) 578
BsaI GGTCTC 1 cut(s) 195
BsaJI CCNNGG 6 cut(s) 34, 40, 41, 90, 274, 359
BsaWI WCCGGW 1 cut(s) 619
BsaXI ACNNNNNCTCC 1 cut(s) 965
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 420
Bse118I RCCGGY 2 cut(s) 342, 619
Bse3DI GCAATG 2 cut(s) 646, 963
BseCI ATCGAT 1 cut(s) 324
BseDI CCNNGG 6 cut(s) 34, 40, 41, 90, 274, 359
BseGI GGATG 1 cut(s) 126
BseLI CCNNNNNNNGG 2 cut(s) 40, 420
BseMI GCAATG 2 cut(s) 646, 963
BseMII CTCAG 1 cut(s) 338
BseRI GAGGAG 6 cut(s) 461, 530, 604, 698, 726, 929
BseSI GKGCMC 1 cut(s) 305
BseX3I CGGCCG 1 cut(s) 103
BseXI GCAGC 1 cut(s) 104
Bsh1236I CGCG 1 cut(s) 108
Bsh1285I CGRYCG 3 cut(s) 106, 115, 410
BshFI GGCC 2 cut(s) 39, 105
BshNI GGYRCC 1 cut(s) 236
BshTI ACCGGT 1 cut(s) 619
BshVI ATCGAT 1 cut(s) 324
BsiEI CGRYCG 3 cut(s) 106, 115, 410
BsiHKAI GWGCWC 4 cut(s) 198, 305, 542, 963
BsiHKCI CYCGRG 2 cut(s) 40, 854
BsiSI CCGG 5 cut(s) 41, 84, 144, 343, 620
BslFI GGGAC 1 cut(s) 230
BslI CCNNNNNNNGG 2 cut(s) 40, 420
BsmAI GTCTC 4 cut(s) 195, 343, 670, 902
BsmBI CGTCTC 2 cut(s) 343, 902
BsmFI GGGAC 1 cut(s) 230
BsmI GAATGC 1 cut(s) 607
BsnI GGCC 2 cut(s) 39, 105
Bso31I GGTCTC 1 cut(s) 195
BsoBI CYCGRG 2 cut(s) 40, 854
Bsp1286I GDGCHC 4 cut(s) 198, 305, 542, 963
Bsp143I GATC 6 cut(s) 86, 132, 265, 321, 501, 897
BspACI CCGC 8 cut(s) 106, 260, 410, 443, 582, 656, 689, 774
BspANI GGCC 2 cut(s) 39, 105
BspCNI CTCAG 1 cut(s) 339
BspDI ATCGAT 1 cut(s) 324
BspFNI CGCG 1 cut(s) 108
BspLI GGNNCC 3 cut(s) 88, 223, 238
BspPI GGATC 4 cut(s) 81, 94, 273, 509
BspT107I GGYRCC 1 cut(s) 236
BspTNI GGTCTC 1 cut(s) 195
BsrDI GCAATG 2 cut(s) 646, 963
BsrFI RCCGGY 2 cut(s) 342, 619
BssAI RCCGGY 2 cut(s) 342, 619
BssECI CCNNGG 6 cut(s) 34, 40, 41, 90, 274, 359
BssMI GATC 6 cut(s) 86, 132, 265, 321, 501, 897
BssT1I CCWWGG 1 cut(s) 90
Bst4CI ACNGT 2 cut(s) 62, 113
Bst6I CTCTTC 4 cut(s) 330, 392, 425, 666
BstBAI YACGTR 1 cut(s) 578
BstC8I GCNNGC 1 cut(s) 344
BstDEI CTNAG 2 cut(s) 10, 347
BstDSI CCRYGG 1 cut(s) 274
BstF5I GGATG 1 cut(s) 126
BstFNI CGCG 1 cut(s) 108
BstHHI GCGC 1 cut(s) 970
BstKTI GATC 6 cut(s) 89, 135, 268, 324, 504, 900
BstMAI GTCTC 4 cut(s) 195, 343, 670, 902
BstMBI GATC 6 cut(s) 86, 132, 265, 321, 501, 897
BstMCI CGRYCG 3 cut(s) 106, 115, 410
BstMWI GCNNNNNNNGC 5 cut(s) 114, 653, 780, 789, 967
BstSCI CCNGG 3 cut(s) 39, 40, 82
BstSLI GKGCMC 1 cut(s) 305
BstUI CGCG 1 cut(s) 108
BstV1I GCAGC 1 cut(s) 104
BstX2I RGATCY 3 cut(s) 86, 265, 501
BstYI RGATCY 3 cut(s) 86, 265, 501
BstZI CGGCCG 1 cut(s) 103
Bsu15I ATCGAT 1 cut(s) 324
BsuRI GGCC 2 cut(s) 39, 105
BsuTUI ATCGAT 1 cut(s) 324
BtgI CCRYGG 1 cut(s) 274
BtsCI GGATG 1 cut(s) 126
BtsIMutI CAGTG 1 cut(s) 552
Cac8I GCNNGC 1 cut(s) 344
CfoI GCGC 1 cut(s) 970
Cfr10I RCCGGY 2 cut(s) 342, 619
Cfr13I GGNCC 2 cut(s) 38, 94
Cfr9I CCCGGG 1 cut(s) 40
ClaI ATCGAT 1 cut(s) 324
CseI GACGC 1 cut(s) 859
CspAI ACCGGT 1 cut(s) 619
CspCI CAANNNNNGTGG 2 cut(s) 784, 819
CviAII CATG 1 cut(s) 680
DdeI CTNAG 2 cut(s) 10, 347
DpnI GATC 6 cut(s) 88, 134, 267, 323, 503, 899
DpnII GATC 6 cut(s) 86, 132, 265, 321, 501, 897
EaeI YGGCCR 1 cut(s) 103
EagI CGGCCG 1 cut(s) 103
Eam1104I CTCTTC 4 cut(s) 330, 392, 425, 666
EarI CTCTTC 4 cut(s) 330, 392, 425, 666
EciI GGCGGA 1 cut(s) 704
Ecl136II GAGCTC 1 cut(s) 540
EclXI CGGCCG 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 90
Eco24I GRGCYC 1 cut(s) 542
Eco31I GGTCTC 1 cut(s) 195
Eco47I GGWCC 1 cut(s) 94
Eco52I CGGCCG 1 cut(s) 103
Eco53kI GAGCTC 1 cut(s) 540
Eco57I CTGAAG 1 cut(s) 576
Eco72I CACGTG 1 cut(s) 578
Eco88I CYCGRG 2 cut(s) 40, 854
EcoICRI GAGCTC 1 cut(s) 540
EcoRI GAATTC 1 cut(s) 951
EcoT14I CCWWGG 1 cut(s) 90
EcoT38I GRGCYC 1 cut(s) 542
ErhI CCWWGG 1 cut(s) 90
Esp3I CGTCTC 2 cut(s) 343, 902
FaeI CATG 1 cut(s) 683
FaiI YATR 3 cut(s) 51, 681, 834
FaqI GGGAC 1 cut(s) 230
FatI CATG 1 cut(s) 679
FauI CCCGC 1 cut(s) 767
FblI GTMKAC 2 cut(s) 406, 549
Fnu4HI GCNGC 3 cut(s) 106, 118, 260
FokI GGATG 1 cut(s) 113
FriOI GRGCYC 1 cut(s) 542
Fsp4HI GCNGC 3 cut(s) 106, 118, 260
FspBI CTAG 1 cut(s) 420
FspI TGCGCA 1 cut(s) 969
GlaI GCGC 1 cut(s) 969
GluI GCNGC 3 cut(s) 106, 118, 260
HaeIII GGCC 2 cut(s) 39, 105
HapII CCGG 5 cut(s) 41, 84, 144, 343, 620
HgaI GACGC 1 cut(s) 859
HhaI GCGC 1 cut(s) 970
Hin1II CATG 1 cut(s) 683
Hin6I GCGC 1 cut(s) 968
HinP1I GCGC 1 cut(s) 968
HincII GTYRAC 1 cut(s) 407
HindII GTYRAC 1 cut(s) 407
HindIII AAGCTT 1 cut(s) 645
HinfI GANTC 8 cut(s) 5, 99, 140, 173, 179, 209, 355, 391
HpaII CCGG 5 cut(s) 41, 84, 144, 343, 620
HphI GGTGA 4 cut(s) 74, 670, 743, 917
Hpy166II GTNNAC 3 cut(s) 303, 407, 550
Hpy188I TCNGA 8 cut(s) 35, 80, 98, 178, 200, 360, 396, 501
Hpy188III TCNNGA 3 cut(s) 130, 505, 956
Hpy8I GTNNAC 3 cut(s) 303, 407, 550
Hpy99I CGWCG 2 cut(s) 113, 284
HpyAV CCTTC 1 cut(s) 551
HpyCH4III ACNGT 2 cut(s) 62, 113
HpyCH4IV ACGT 2 cut(s) 577, 705
HpyCH4V TGCA 4 cut(s) 120, 303, 533, 605
HpyF10VI GCNNNNNNNGC 5 cut(s) 114, 653, 780, 789, 967
HpyF3I CTNAG 2 cut(s) 10, 347
HpySE526I ACGT 2 cut(s) 577, 705
Hsp92II CATG 1 cut(s) 683
HspAI GCGC 1 cut(s) 968
KroI GCCGGC 1 cut(s) 342
KroNI GCCGGC 1 cut(s) 344
Kzo9I GATC 6 cut(s) 86, 132, 265, 321, 501, 897
LmnI GCTCC 3 cut(s) 36, 201, 958
LpnPI CCDG 9 cut(s) 35, 54, 97, 157, 248, 356, 468, 633, 956
Lsp1109I GCAGC 1 cut(s) 104
MaeI CTAG 1 cut(s) 420
MaeII ACGT 2 cut(s) 577, 705
MaeIII GTNAC 1 cut(s) 62
MalI GATC 6 cut(s) 88, 134, 267, 323, 503, 899
MboI GATC 6 cut(s) 86, 132, 265, 321, 501, 897
MboII GAAGA 9 cut(s) 144, 347, 409, 442, 520, 538, 610, 683, 856
MflI RGATCY 3 cut(s) 86, 265, 501
MhlI GDGCHC 4 cut(s) 198, 305, 542, 963
MluCI AATT 4 cut(s) 52, 375, 662, 951
MlyI GAGTC 3 cut(s) 14, 134, 182
MmeI TCCRAC 2 cut(s) 103, 688
MroNI GCCGGC 1 cut(s) 342
MseI TTAA 3 cut(s) 318, 786, 822
MspA1I CMGCKG 1 cut(s) 262
MspI CCGG 5 cut(s) 41, 84, 144, 343, 620
MspR9I CCNGG 3 cut(s) 41, 42, 84
Mva1269I GAATGC 1 cut(s) 607
MvnI CGCG 1 cut(s) 108
MwoI GCNNNNNNNGC 5 cut(s) 114, 653, 780, 789, 967
NaeI GCCGGC 1 cut(s) 344
NciI CCSGG 3 cut(s) 41, 42, 84
NdeII GATC 6 cut(s) 86, 132, 265, 321, 501, 897
NgoMIV GCCGGC 1 cut(s) 342
NlaIII CATG 1 cut(s) 683
NlaIV GGNNCC 3 cut(s) 88, 223, 238
NmuCI GTSAC 1 cut(s) 62
NsbI TGCGCA 1 cut(s) 969
PcsI WCGNNNNNNNCGW 1 cut(s) 330
PctI GAATGC 1 cut(s) 607
PdiI GCCGGC 1 cut(s) 344
PfeI GAWTC 5 cut(s) 99, 179, 209, 355, 391
PinAI ACCGGT 1 cut(s) 619
PkrI GCNGC 3 cut(s) 107, 119, 261
PleI GAGTC 3 cut(s) 13, 134, 181
PmaCI CACGTG 1 cut(s) 578
PmlI CACGTG 1 cut(s) 578
PpsI GAGTC 3 cut(s) 13, 134, 181
Ppu21I YACGTR 1 cut(s) 578
Psp124BI GAGCTC 1 cut(s) 542
Psp1406I AACGTT 1 cut(s) 705
PspCI CACGTG 1 cut(s) 578
PspN4I GGNNCC 3 cut(s) 88, 223, 238
PspPI GGNCC 2 cut(s) 38, 94
PsuI RGATCY 3 cut(s) 86, 265, 501
SacI GAGCTC 1 cut(s) 542
SalI GTCGAC 1 cut(s) 405
SaqAI TTAA 3 cut(s) 318, 786, 822
SatI GCNGC 3 cut(s) 106, 118, 260
Sau3AI GATC 6 cut(s) 86, 132, 265, 321, 501, 897
Sau96I GGNCC 2 cut(s) 38, 94
SchI GAGTC 3 cut(s) 14, 134, 182
ScrFI CCNGG 3 cut(s) 41, 42, 84
SduI GDGCHC 4 cut(s) 198, 305, 542, 963
SinI GGWCC 1 cut(s) 94
SmaI CCCGGG 1 cut(s) 42
Sse9I AATT 4 cut(s) 52, 375, 662, 951
SsiI CCGC 8 cut(s) 106, 260, 410, 443, 582, 656, 689, 774
SspMI CTAG 1 cut(s) 420
SstI GAGCTC 1 cut(s) 542
StyD4I CCNGG 3 cut(s) 39, 40, 82
StyI CCWWGG 1 cut(s) 90
TaaI ACNGT 2 cut(s) 62, 113
TaiI ACGT 2 cut(s) 580, 708
TaqI TCGA 7 cut(s) 171, 207, 324, 369, 406, 470, 506
TasI AATT 4 cut(s) 52, 375, 662, 951
TauI GCSGC 2 cut(s) 108, 262
TfiI GAWTC 5 cut(s) 99, 179, 209, 355, 391
Tru1I TTAA 3 cut(s) 318, 786, 822
Tru9I TTAA 3 cut(s) 318, 786, 822
TscAI CASTG 1 cut(s) 559
TseFI GTSAC 1 cut(s) 62
TseI GCWGC 1 cut(s) 117
Tsp45I GTSAC 1 cut(s) 62
TspDTI ATGAA 2 cut(s) 38, 657
TspGWI ACGGA 3 cut(s) 234, 367, 926
TspMI CCCGGG 1 cut(s) 40
TspRI CASTG 1 cut(s) 559
VneI GTGCAC 1 cut(s) 301
VpaK11BI GGWCC 1 cut(s) 94
XapI RAATTY 1 cut(s) 951
XmaI CCCGGG 1 cut(s) 40
XmiI GTMKAC 2 cut(s) 406, 549
XspI CTAG 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.