Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009448.1

Orthogroup ID

OG0002999

Physical Location & Seq

Genomic Coordinates Forward (+)

87 .. 1118

Gene Structure 1032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009448.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

atggaagacgtctcaaactttacaacagactcgggagcaatttcgacatcactagattctggcgtttccctccgaaacaaaggcatttcaaagatgctggaccctttagctctcaagctcgaaatgctcaaaggcccacgtgagggagaaaccctagagtaccgacccagatccaaggtccgaatcggccgggtcgtccgcggcaacaacctcgccatcaaagactccggcatttccaccaaccacctcatcatcgacttcgaatcgggtaaatggatgatccgagacctcgactcctccaacggaaccatcgtaaacgacaccaagctcaacccggacacgccgttggagctgaacgacggcgacgagataaagatcggcgagtacacgtcgatctccgtcaagatcgacggccacgaagggagccgattgagaaggaatcccaggcgcggcgcggttcagggcctcagatgtaggaaggaagagaattctgaattggagagagagggaggagaggaaattgaggtggtagagaagccgaagaggggccggccgaggaaagctagggttttgaagagtgaggttgctgtgtcggaagtgagttccagagatgtggaagctgtggttccggatttggagacttgcagtgtacagtgtgaacaagtgcagattgaacctaaggggcgtggtggggggaggaagaggaagaatggcgataaaggggatgactgtaatgttggcgtgggtggcgataaggttgaaagtggtagtaggagctgttttggtgttagtggtgctaagaatgttgataaaaatgggaatggttctggtgttaaacaaggtttgggaaagatttggcaggagccagatttggagaagatgactttggatgattggtttgattatgtgcaagtttctttgccgaaaggggttaatgatgagattgacaagatttgtgccggaatgagagacaaggctaagctagtccaggagtatatagcacaacacaagaaggaaaagtgtcacagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

343

Amino Acids

37.73

Weight (kDa)

6.93

Isoelectric Point (pI)

29.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14490
fragaria_vesca	FvH4_4g02980 FvH4_4g02980 FvH4_4g02980 FvH4_4g02980
malus_domestica	MD13G1205500.v1.1 MD16G1211500.v1.1
prunus_persica	Prupe.1G033600_v2.0.a1
pyrus_communis	pycom13g17820 pycom16g17730
rosa_chinensis	RchiOBHm_Chr4g0391131 RchiOBHm_Chr7g0211851 RchiOBHm_Chr7g0224291
rosa_laevigata	RLG00000009886
rosa_multiflora	Rmu_co8378449.1_g000001 Rmu_sc0001824.1_g000046 Rmu_sc0008872.1_g000006 Rmu_sc0009005.1_g000005 Rmu_sc0009448.1_g000001 Rmu_sc0028516.1_g000002 Rmu_sc0030074.1_g000001 Rmu_sc0032072.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247360 Rroxscaffold_5G00336920
rosa_rugosa	Rorug03G0334400
rosa_samantha	Rh4AG034800 Rh4BG030000 Rh4CG038600 Rh4DG032000 Rh4DG032700 Rh7AG262000 Rh7AG381100 Rh7BG255700 Rh7CG400500 Rh7DG268500 Rh7DG367500
rosa_wichuraiana	Rw4G002710 Rw7G031100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	12
AccII	CGCG	3 cut(s)	201, 450, 455
AccIII	TCCGGA	1 cut(s)	628
AciI	CCGC	4 cut(s)	199, 201, 450, 455
AclWI	GGATC	2 cut(s)	165, 274
AcoI	YGGCCR	3 cut(s)	187, 412, 551
AcsI	RAATTY	1 cut(s)	487
AcvI	CACGTG	1 cut(s)	140
AcyI	GRCGYC	1 cut(s)	9
AfaI	GTAC	3 cut(s)	161, 386, 651
AfiI	CCNNNNNNNGG	4 cut(s)	142, 143, 449, 545
AflIII	ACRYGT	1 cut(s)	387
AgsI	TTSAA	4 cut(s)	90, 574, 674, 761
AjiI	CACGTC	1 cut(s)	390
AjnI	CCWGG	2 cut(s)	443, 987
AjuI	GAANNNNNNNTTGG	4 cut(s)	479, 511, 869, 901
AluBI	AGCT	8 cut(s)	110, 118, 328, 352, 563, 620, 777, 982
AluI	AGCT	8 cut(s)	110, 118, 328, 352, 563, 620, 777, 982
Alw26I	GTCTC	4 cut(s)	16, 279, 632, 963
AlwI	GGATC	2 cut(s)	165, 274
Ama87I	CYCGRG	1 cut(s)	31
Aor13HI	TCCGGA	1 cut(s)	628
AoxI	GGCC	6 cut(s)	133, 187, 412, 463, 547, 551
ApoI	RAATTY	1 cut(s)	487
AspLEI	GCGC	2 cut(s)	450, 455
AspS9I	GGNCC	5 cut(s)	100, 134, 178, 463, 547
AsuC2I	CCSGG	2 cut(s)	191, 335
AsuII	TTCGAA	1 cut(s)	261
AvaI	CYCGRG	1 cut(s)	31
AvaII	GGWCC	2 cut(s)	100, 178
AxyI	CCTNAGG	1 cut(s)	678
BbrPI	CACGTG	1 cut(s)	140
BbsI	GAAGAC	1 cut(s)	12
BccI	CCATC	2 cut(s)	224, 317
BceAI	ACGGC	3 cut(s)	328, 376, 427
BcgI	CGANNNNNNTGC	2 cut(s)	193, 227
BciT130I	CCWGG	2 cut(s)	445, 989
BcnI	CCSGG	2 cut(s)	191, 335
BcoDI	GTCTC	4 cut(s)	16, 279, 632, 963
BfaI	CTAG	4 cut(s)	53, 155, 564, 983
BisI	GCNGC	2 cut(s)	202, 451
BlpI	GCTNAGC	1 cut(s)	978
BlsI	GCNGC	2 cut(s)	203, 452
Bme1390I	CCNGG	4 cut(s)	191, 335, 445, 989
Bme18I	GGWCC	2 cut(s)	100, 178
BmeT110I	CYCGRG	1 cut(s)	31
BmgBI	CACGTC	1 cut(s)	390
BmgT120I	GGNCC	5 cut(s)	100, 134, 178, 463, 547
BmiI	GGNNCC	6 cut(s)	102, 307, 425, 548, 627, 864
BmrFI	CCNGG	4 cut(s)	191, 335, 445, 989
BmsI	GCATC	1 cut(s)	84
BpiI	GAAGAC	1 cut(s)	12
Bpu1102I	GCTNAGC	1 cut(s)	978
Bpu14I	TTCGAA	1 cut(s)	261
BpuEI	CTTGAG	1 cut(s)	98
BpuMI	CCSGG	2 cut(s)	191, 335
BsaAI	YACGTR	1 cut(s)	140
BsaBI	GATNNNNATC	1 cut(s)	374
BsaHI	GRCGYC	1 cut(s)	9
BsaI	GGTCTC	1 cut(s)	279
BsaJI	CCNNGG	4 cut(s)	174, 199, 443, 554
BsaWI	WCCGGW	1 cut(s)	628
BsaXI	ACNNNNNCTCC	2 cut(s)	278, 308
Bsc4I	CCNNNNNNNGG	4 cut(s)	142, 143, 449, 545
Bse118I	RCCGGY	1 cut(s)	549
Bse21I	CCTNAGG	1 cut(s)	678
Bse8I	GATNNNNATC	1 cut(s)	374
BseAI	TCCGGA	1 cut(s)	628
BseBI	CCWGG	2 cut(s)	445, 989
BseDI	CCNNGG	4 cut(s)	174, 199, 443, 554
BseGI	GGATG	3 cut(s)	282, 730, 895
BseJI	GATNNNNATC	1 cut(s)	374
BseLI	CCNNNNNNNGG	4 cut(s)	142, 143, 449, 545
BseMII	CTCAG	1 cut(s)	481
BseRI	GAGGAG	2 cut(s)	286, 525
BseX3I	CGGCCG	2 cut(s)	187, 551
BsgI	GTGCAG	1 cut(s)	686
Bsh1236I	CGCG	3 cut(s)	201, 450, 455
Bsh1285I	CGRYCG	2 cut(s)	190, 554
BshFI	GGCC	6 cut(s)	135, 189, 414, 465, 549, 553
BsiEI	CGRYCG	2 cut(s)	190, 554
BsiHKCI	CYCGRG	1 cut(s)	31
BsiSI	CCGG	6 cut(s)	190, 228, 335, 550, 629, 960
BslI	CCNNNNNNNGG	4 cut(s)	142, 143, 449, 545
BsmAI	GTCTC	4 cut(s)	16, 279, 632, 963
BsmBI	CGTCTC	1 cut(s)	16
BsnI	GGCC	6 cut(s)	135, 189, 414, 465, 549, 553
Bso31I	GGTCTC	1 cut(s)	279
BsoBI	CYCGRG	1 cut(s)	31
Bsp119I	TTCGAA	1 cut(s)	261
Bsp13I	TCCGGA	1 cut(s)	628
Bsp1407I	TGTACA	1 cut(s)	649
Bsp143I	GATC	5 cut(s)	170, 279, 375, 393, 405
Bsp1720I	GCTNAGC	1 cut(s)	978
BspACI	CCGC	4 cut(s)	199, 201, 450, 455
BspANI	GGCC	6 cut(s)	135, 189, 414, 465, 549, 553
BspCNI	CTCAG	1 cut(s)	480
BspEI	TCCGGA	1 cut(s)	628
BspFNI	CGCG	3 cut(s)	201, 450, 455
BspLI	GGNNCC	6 cut(s)	102, 307, 425, 548, 627, 864
BspPI	GGATC	2 cut(s)	165, 274
BspT104I	TTCGAA	1 cut(s)	261
BspTNI	GGTCTC	1 cut(s)	279
BsrFI	RCCGGY	1 cut(s)	549
BsrGI	TGTACA	1 cut(s)	649
BssAI	RCCGGY	1 cut(s)	549
BssECI	CCNNGG	4 cut(s)	174, 199, 443, 554
BssMI	GATC	5 cut(s)	170, 279, 375, 393, 405
BssNI	GRCGYC	1 cut(s)	9
BssT1I	CCWWGG	1 cut(s)	174
Bst2UI	CCWGG	2 cut(s)	445, 989
Bst4CI	ACNGT	3 cut(s)	654, 731, 1028
Bst6I	CTCTTC	4 cut(s)	477, 536, 569, 695
BstACI	GRCGYC	1 cut(s)	9
BstAUI	TGTACA	1 cut(s)	649
BstBAI	YACGTR	1 cut(s)	140
BstBI	TTCGAA	1 cut(s)	261
BstC8I	GCNNGC	1 cut(s)	551
BstDEI	CTNAG	4 cut(s)	467, 678, 798, 978
BstDSI	CCRYGG	1 cut(s)	199
BstF5I	GGATG	3 cut(s)	282, 730, 895
BstFNI	CGCG	3 cut(s)	201, 450, 455
BstHHI	GCGC	2 cut(s)	450, 455
BstKTI	GATC	5 cut(s)	173, 282, 378, 396, 408
BstMAI	GTCTC	4 cut(s)	16, 279, 632, 963
BstMBI	GATC	5 cut(s)	170, 279, 375, 393, 405
BstMCI	CGRYCG	2 cut(s)	190, 554
BstMWI	GCNNNNNNNGC	3 cut(s)	124, 349, 747
BstNI	CCWGG	2 cut(s)	445, 989
BstSCI	CCNGG	4 cut(s)	189, 333, 443, 987
BstUI	CGCG	3 cut(s)	201, 450, 455
BstV2I	GAAGAC	1 cut(s)	12
BstX2I	RGATCY	1 cut(s)	170
BstXI	CCANNNNNNTGG	1 cut(s)	613
BstYI	RGATCY	1 cut(s)	170
BstZI	CGGCCG	2 cut(s)	187, 551
Bsu36I	CCTNAGG	1 cut(s)	678
BsuRI	GGCC	6 cut(s)	135, 189, 414, 465, 549, 553
BtgI	CCRYGG	1 cut(s)	199
BtrI	CACGTC	1 cut(s)	390
BtsCI	GGATG	3 cut(s)	282, 730, 895
BtsI	GCAGTG	1 cut(s)	652
BtsIMutI	CAGTG	2 cut(s)	652, 659
Cac8I	GCNNGC	1 cut(s)	551
CfoI	GCGC	2 cut(s)	450, 455
Cfr10I	RCCGGY	1 cut(s)	549
Cfr13I	GGNCC	5 cut(s)	100, 134, 178, 463, 547
Cfr42I	CCGCGG	1 cut(s)	202
Csp6I	GTAC	3 cut(s)	160, 385, 650
CviQI	GTAC	3 cut(s)	160, 385, 650
DdeI	CTNAG	4 cut(s)	467, 678, 798, 978
DpnI	GATC	5 cut(s)	172, 281, 377, 395, 407
DpnII	GATC	5 cut(s)	170, 279, 375, 393, 405
EaeI	YGGCCR	3 cut(s)	187, 412, 551
EagI	CGGCCG	2 cut(s)	187, 551
Eam1104I	CTCTTC	4 cut(s)	477, 536, 569, 695
EarI	CTCTTC	4 cut(s)	477, 536, 569, 695
EclXI	CGGCCG	2 cut(s)	187, 551
Eco130I	CCWWGG	1 cut(s)	174
Eco31I	GGTCTC	1 cut(s)	279
Eco47I	GGWCC	2 cut(s)	100, 178
Eco52I	CGGCCG	2 cut(s)	187, 551
Eco72I	CACGTG	1 cut(s)	140
Eco81I	CCTNAGG	1 cut(s)	678
Eco88I	CYCGRG	1 cut(s)	31
EcoO109I	RGGNCCY	1 cut(s)	463
EcoRI	GAATTC	1 cut(s)	487
EcoRII	CCWGG	2 cut(s)	443, 987
EcoT14I	CCWWGG	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	174
Esp3I	CGTCTC	1 cut(s)	16
FaiI	YATR	3 cut(s)	906, 996, 998
Fnu4HI	GCNGC	2 cut(s)	202, 451
FokI	GGATG	3 cut(s)	289, 737, 902
FseI	GGCCGGCC	1 cut(s)	553
Fsp4HI	GCNGC	2 cut(s)	202, 451
FspBI	CTAG	4 cut(s)	53, 155, 564, 983
GlaI	GCGC	2 cut(s)	449, 454
GluI	GCNGC	2 cut(s)	202, 451
HaeIII	GGCC	6 cut(s)	135, 189, 414, 465, 549, 553
HapII	CCGG	6 cut(s)	190, 228, 335, 550, 629, 960
HhaI	GCGC	2 cut(s)	450, 455
Hin1I	GRCGYC	1 cut(s)	9
Hin6I	GCGC	2 cut(s)	448, 453
HinP1I	GCGC	2 cut(s)	448, 453
HinfI	GANTC	7 cut(s)	29, 56, 183, 224, 263, 293, 439
HpaII	CCGG	6 cut(s)	190, 228, 335, 550, 629, 960
Hpy166II	GTNNAC	4 cut(s)	316, 387, 650, 659
Hpy188I	TCNGA	6 cut(s)	74, 182, 284, 470, 493, 595
Hpy188III	TCNNGA	4 cut(s)	33, 403, 606, 629
Hpy8I	GTNNAC	4 cut(s)	316, 387, 650, 659
Hpy99I	CGWCG	4 cut(s)	362, 368, 394, 413
HpyAV	CCTTC	4 cut(s)	413, 429, 472, 1006
HpyCH4III	ACNGT	3 cut(s)	654, 731, 1028
HpyCH4IV	ACGT	3 cut(s)	9, 139, 389
HpyCH4V	TGCA	3 cut(s)	645, 667, 910
HpyF10VI	GCNNNNNNNGC	3 cut(s)	124, 349, 747
HpyF3I	CTNAG	4 cut(s)	467, 678, 798, 978
HpySE526I	ACGT	3 cut(s)	9, 139, 389
Hsp92I	GRCGYC	1 cut(s)	9
HspAI	GCGC	2 cut(s)	448, 453
Kpn2I	TCCGGA	1 cut(s)	628
KroI	GCCGGC	1 cut(s)	549
KroNI	GCCGGC	1 cut(s)	551
KspI	CCGCGG	1 cut(s)	202
Kzo9I	GATC	5 cut(s)	170, 279, 375, 393, 405
LmnI	GCTCC	5 cut(s)	35, 349, 423, 774, 862
LweI	GCATC	1 cut(s)	84
MaeI	CTAG	4 cut(s)	53, 155, 564, 983
MaeII	ACGT	3 cut(s)	9, 139, 389
MaeIII	GTNAC	1 cut(s)	1022
MalI	GATC	5 cut(s)	172, 281, 377, 395, 407
MboI	GATC	5 cut(s)	170, 279, 375, 393, 405
MboII	GAAGA	7 cut(s)	17, 494, 553, 586, 712, 718, 889
MflI	RGATCY	1 cut(s)	170
MluCI	AATT	4 cut(s)	39, 487, 494, 519
MlyI	GAGTC	3 cut(s)	23, 218, 287
MmeI	TCCRAC	3 cut(s)	324, 327, 573
MroI	TCCGGA	1 cut(s)	628
MroNI	GCCGGC	1 cut(s)	549
MseI	TTAA	3 cut(s)	834, 933, 1030
MspA1I	CMGCKG	1 cut(s)	201
MspI	CCGG	6 cut(s)	190, 228, 335, 550, 629, 960
MspR9I	CCNGG	4 cut(s)	191, 335, 445, 989
MteI	GCGCNGCGC	1 cut(s)	451
MvaI	CCWGG	2 cut(s)	445, 989
MvnI	CGCG	3 cut(s)	201, 450, 455
MwoI	GCNNNNNNNGC	3 cut(s)	124, 349, 747
NaeI	GCCGGC	1 cut(s)	551
NciI	CCSGG	2 cut(s)	191, 335
NdeII	GATC	5 cut(s)	170, 279, 375, 393, 405
NgoMIV	GCCGGC	1 cut(s)	549
NlaIV	GGNNCC	6 cut(s)	102, 307, 425, 548, 627, 864
NmeAIII	GCCGAG	1 cut(s)	579
NmuCI	GTSAC	1 cut(s)	1022
NspV	TTCGAA	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	4 cut(s)	192, 309, 363, 414
PdiI	GCCGGC	1 cut(s)	551
PfeI	GAWTC	4 cut(s)	56, 183, 263, 439
PfoI	TCCNGGA	1 cut(s)	987
PkrI	GCNGC	2 cut(s)	203, 452
PleI	GAGTC	3 cut(s)	23, 218, 287
PmaCI	CACGTG	1 cut(s)	140
PmlI	CACGTG	1 cut(s)	140
PpsI	GAGTC	3 cut(s)	23, 218, 287
Ppu21I	YACGTR	1 cut(s)	140
Psp6I	CCWGG	2 cut(s)	443, 987
PspCI	CACGTG	1 cut(s)	140
PspGI	CCWGG	2 cut(s)	443, 987
PspN4I	GGNNCC	6 cut(s)	102, 307, 425, 548, 627, 864
PspPI	GGNCC	5 cut(s)	100, 134, 178, 463, 547
PsuI	RGATCY	1 cut(s)	170
RigI	GGCCGGCC	1 cut(s)	553
RsaI	GTAC	3 cut(s)	161, 386, 651
RsaNI	GTAC	3 cut(s)	160, 385, 650
SacII	CCGCGG	1 cut(s)	202
SaqAI	TTAA	3 cut(s)	834, 933, 1030
SatI	GCNGC	2 cut(s)	202, 451
Sau3AI	GATC	5 cut(s)	170, 279, 375, 393, 405
Sau96I	GGNCC	5 cut(s)	100, 134, 178, 463, 547
SchI	GAGTC	3 cut(s)	23, 218, 287
ScrFI	CCNGG	4 cut(s)	191, 335, 445, 989
SfaNI	GCATC	1 cut(s)	84
Sfr303I	CCGCGG	1 cut(s)	202
SfuI	TTCGAA	1 cut(s)	261
SgrBI	CCGCGG	1 cut(s)	202
SinI	GGWCC	2 cut(s)	100, 178
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	4 cut(s)	39, 487, 494, 519
SsiI	CCGC	4 cut(s)	199, 201, 450, 455
SspMI	CTAG	4 cut(s)	53, 155, 564, 983
StyD4I	CCNGG	4 cut(s)	189, 333, 443, 987
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	3 cut(s)	654, 731, 1028
TaiI	ACGT	3 cut(s)	12, 142, 392
TaqI	TCGA	7 cut(s)	44, 120, 255, 261, 291, 392, 408
TasI	AATT	4 cut(s)	39, 487, 494, 519
TatI	WGTACW	2 cut(s)	384, 649
TauI	GCSGC	2 cut(s)	204, 453
TfiI	GAWTC	4 cut(s)	56, 183, 263, 439
Tru1I	TTAA	3 cut(s)	834, 933, 1030
Tru9I	TTAA	3 cut(s)	834, 933, 1030
TscAI	CASTG	2 cut(s)	652, 659
TseFI	GTSAC	1 cut(s)	1022
Tsp45I	GTSAC	1 cut(s)	1022
TspGWI	ACGGA	2 cut(s)	318, 388
TspRI	CASTG	2 cut(s)	652, 659
VpaK11BI	GGWCC	2 cut(s)	100, 178
XapI	RAATTY	1 cut(s)	487
XspI	CTAG	4 cut(s)	53, 155, 564, 983
ZraI	GACGTC	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.