Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002999

Physical Location & Seq

Genomic Coordinates Forward (+)

49687656 .. 49691022

Gene Structure 3367 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG367500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

CATTACTTGCTCGGAGCATGGAAGACGTCTCAAACCTTTACAACAGACTCGGGAGCAATTTCGACATCACTAGATTCTGGCGTTTCCCTCCGAAACAAAGGCATTTCAAAGATGCTGGACCCTTTAGCTCTCAAGCTCGAAATGCTCAAAGGCCCACGTGAGGGAGAAACCCTAGAGTACCGACCCAGATCCAAGGTCCGAATCGGCCGGGTCGTCCGCGGCAACAACCTCGCCATCAAAGACTCCGGCATTTCCACCAACCACCTCATCATCGACTTCGAATCGGGTAAATGGATGATCCGAGACCTCGACTCCTCCAACGGAACCATCGTAAACGACACCAAGCTCAACCCCGACACGCCGTTGGAGCTGAACGACGGCGACGAGATAAAGATCGGGGAGTACACGTCGATCTCCGTCAAGATCGACCGCCACGAAGGGAGCCGGTTGAGAAGGAATCCGAGGCGCGGCGCGGTTCAGGGCCTCAGATGTAGGAAGGAAGAGAATTCTGAATTGGAGAGAGAGGGAGGAGAGGAAATTGAGGTGGTAGAGAAGCCGAAGAGGGGCCGGCCGAGGAAAGCTAGGGTTTTGAAGAGTGAGGTTGCTGTGTCGGAAGTGAGTTCCAGAGATGTGGAAGCTGTGGTTCCGGATTTGGAGACTTGCAGTGTACAGTGTGAACAAGTGCAGATTGAACCTAAGGGGCGTGGTGGGGGGAGGAAGAGGAAGAATGGCGATAAAGGGGATGACTGTAATGTTGGCGTGGGTGGCGATAAGGTTGAAAGTGGTAGTAGGAGCTGTTTTGGTGTTAGTGGTGCTAAGAATGTTGATAAAAAGGGGAATGGTTCTGGTGTTAAACAAGGTTTGGGAAAGATTTGGCAGGAGCCAGATTTGGAGAAGATGACTTTGGATGATTGGTTTGATTATGTGCAAGTTTCTTTGCCGAAAGGGGTTAATGATGAGATTGACAAGATTTGTGCCGGAATGAGAGACAAGGCTAAGCTAGTCCAGGAGTATATAGCACAACACAAGAAGGAAAAGTGTCACAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA

Protein Analysis

349

Amino Acids

38.56

Weight (kDa)

8.68

Isoelectric Point (pI)

31.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Yop-YscD_cpl	PF16697	47 - 134	1.1e-10	Inner membrane component of T3SS, cytoplasmic domain
FHA	PF00498	66 - 133	3.4e-18	FHA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002999)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14490
fragaria_vesca	FvH4_4g02980 FvH4_4g02980 FvH4_4g02980 FvH4_4g02980
malus_domestica	MD13G1205500.v1.1 MD16G1211500.v1.1
prunus_persica	Prupe.1G033600_v2.0.a1
pyrus_communis	pycom13g17820 pycom16g17730
rosa_chinensis	RchiOBHm_Chr4g0391131 RchiOBHm_Chr7g0211851 RchiOBHm_Chr7g0224291
rosa_laevigata	RLG00000009886
rosa_multiflora	Rmu_co8378449.1_g000001 Rmu_sc0001824.1_g000046 Rmu_sc0008872.1_g000006 Rmu_sc0009005.1_g000005 Rmu_sc0009448.1_g000001 Rmu_sc0028516.1_g000002 Rmu_sc0030074.1_g000001 Rmu_sc0032072.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247360 Rroxscaffold_5G00336920
rosa_rugosa	Rorug03G0334400
rosa_samantha	Rh4AG034800 Rh4BG030000 Rh4CG038600 Rh4DG032000 Rh4DG032700 Rh7AG262000 Rh7AG381100 Rh7BG255700 Rh7CG400500 Rh7DG268500 Rh7DG367500
rosa_wichuraiana	Rw4G002710 Rw7G031100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	29
AccII	CGCG	3 cut(s)	219, 468, 473
AccIII	TCCGGA	1 cut(s)	646
AciI	CCGC	5 cut(s)	217, 219, 430, 468, 473
AclWI	GGATC	2 cut(s)	183, 292
AcoI	YGGCCR	2 cut(s)	205, 569
AcsI	RAATTY	1 cut(s)	505
AcvI	CACGTG	1 cut(s)	158
AcyI	GRCGYC	1 cut(s)	26
AfaI	GTAC	3 cut(s)	179, 404, 669
AfiI	CCNNNNNNNGG	4 cut(s)	160, 161, 467, 563
AflIII	ACRYGT	1 cut(s)	405
AgsI	TTSAA	4 cut(s)	108, 592, 692, 779
AjiI	CACGTC	1 cut(s)	408
AjnI	CCWGG	1 cut(s)	1005
AjuI	GAANNNNNNNTTGG	4 cut(s)	497, 529, 887, 919
AluBI	AGCT	8 cut(s)	128, 136, 346, 370, 581, 638, 795, 1000
AluI	AGCT	8 cut(s)	128, 136, 346, 370, 581, 638, 795, 1000
Alw26I	GTCTC	4 cut(s)	33, 297, 650, 981
AlwI	GGATC	2 cut(s)	183, 292
Ama87I	CYCGRG	1 cut(s)	49
Aor13HI	TCCGGA	1 cut(s)	646
AoxI	GGCC	5 cut(s)	151, 205, 481, 565, 569
ApoI	RAATTY	1 cut(s)	505
AspLEI	GCGC	2 cut(s)	468, 473
AspS9I	GGNCC	5 cut(s)	118, 152, 196, 481, 565
AsuC2I	CCSGG	1 cut(s)	209
AsuII	TTCGAA	1 cut(s)	279
AvaI	CYCGRG	1 cut(s)	49
AvaII	GGWCC	2 cut(s)	118, 196
AxyI	CCTNAGG	1 cut(s)	696
BbrPI	CACGTG	1 cut(s)	158
BbsI	GAAGAC	1 cut(s)	29
BccI	CCATC	2 cut(s)	242, 335
BceAI	ACGGC	2 cut(s)	346, 394
BcgI	CGANNNNNNTGC	2 cut(s)	211, 245
BciT130I	CCWGG	1 cut(s)	1007
BcnI	CCSGG	1 cut(s)	209
BcoDI	GTCTC	4 cut(s)	33, 297, 650, 981
BfaI	CTAG	4 cut(s)	71, 173, 582, 1001
BisI	GCNGC	2 cut(s)	220, 469
BlpI	GCTNAGC	1 cut(s)	996
BlsI	GCNGC	2 cut(s)	221, 470
Bme1390I	CCNGG	2 cut(s)	209, 1007
Bme18I	GGWCC	2 cut(s)	118, 196
BmeT110I	CYCGRG	1 cut(s)	49
BmgBI	CACGTC	1 cut(s)	408
BmgT120I	GGNCC	5 cut(s)	118, 152, 196, 481, 565
BmiI	GGNNCC	6 cut(s)	120, 325, 443, 566, 645, 882
BmrFI	CCNGG	2 cut(s)	209, 1007
BmsI	GCATC	1 cut(s)	102
BpiI	GAAGAC	1 cut(s)	29
Bpu1102I	GCTNAGC	1 cut(s)	996
Bpu14I	TTCGAA	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	116
BpuMI	CCSGG	1 cut(s)	209
BsaAI	YACGTR	1 cut(s)	158
BsaBI	GATNNNNATC	1 cut(s)	392
BsaHI	GRCGYC	1 cut(s)	26
BsaI	GGTCTC	1 cut(s)	297
BsaJI	CCNNGG	4 cut(s)	192, 217, 461, 572
BsaWI	WCCGGW	1 cut(s)	646
BsaXI	ACNNNNNCTCC	4 cut(s)	296, 326, 392, 422
Bsc4I	CCNNNNNNNGG	4 cut(s)	160, 161, 467, 563
Bse118I	RCCGGY	2 cut(s)	444, 567
Bse21I	CCTNAGG	1 cut(s)	696
Bse8I	GATNNNNATC	1 cut(s)	392
BseAI	TCCGGA	1 cut(s)	646
BseBI	CCWGG	1 cut(s)	1007
BseDI	CCNNGG	4 cut(s)	192, 217, 461, 572
BseGI	GGATG	3 cut(s)	300, 748, 913
BseJI	GATNNNNATC	1 cut(s)	392
BseLI	CCNNNNNNNGG	4 cut(s)	160, 161, 467, 563
BseMII	CTCAG	1 cut(s)	499
BseRI	GAGGAG	2 cut(s)	304, 543
BseX3I	CGGCCG	2 cut(s)	205, 569
BsgI	GTGCAG	1 cut(s)	704
Bsh1236I	CGCG	3 cut(s)	219, 468, 473
Bsh1285I	CGRYCG	3 cut(s)	208, 430, 572
BshFI	GGCC	5 cut(s)	153, 207, 483, 567, 571
BsiEI	CGRYCG	3 cut(s)	208, 430, 572
BsiHKCI	CYCGRG	1 cut(s)	49
BsiSI	CCGG	6 cut(s)	208, 246, 445, 568, 647, 978
BslI	CCNNNNNNNGG	4 cut(s)	160, 161, 467, 563
BsmAI	GTCTC	4 cut(s)	33, 297, 650, 981
BsmBI	CGTCTC	1 cut(s)	33
BsnI	GGCC	5 cut(s)	153, 207, 483, 567, 571
Bso31I	GGTCTC	1 cut(s)	297
BsoBI	CYCGRG	1 cut(s)	49
Bsp119I	TTCGAA	1 cut(s)	279
Bsp13I	TCCGGA	1 cut(s)	646
Bsp1407I	TGTACA	1 cut(s)	667
Bsp143I	GATC	5 cut(s)	188, 297, 393, 411, 423
Bsp1720I	GCTNAGC	1 cut(s)	996
BspACI	CCGC	5 cut(s)	217, 219, 430, 468, 473
BspANI	GGCC	5 cut(s)	153, 207, 483, 567, 571
BspCNI	CTCAG	1 cut(s)	498
BspEI	TCCGGA	1 cut(s)	646
BspFNI	CGCG	3 cut(s)	219, 468, 473
BspLI	GGNNCC	6 cut(s)	120, 325, 443, 566, 645, 882
BspPI	GGATC	2 cut(s)	183, 292
BspT104I	TTCGAA	1 cut(s)	279
BspTNI	GGTCTC	1 cut(s)	297
BsrFI	RCCGGY	2 cut(s)	444, 567
BsrGI	TGTACA	1 cut(s)	667
BssAI	RCCGGY	2 cut(s)	444, 567
BssECI	CCNNGG	4 cut(s)	192, 217, 461, 572
BssMI	GATC	5 cut(s)	188, 297, 393, 411, 423
BssNI	GRCGYC	1 cut(s)	26
BssT1I	CCWWGG	1 cut(s)	192
Bst2UI	CCWGG	1 cut(s)	1007
Bst4CI	ACNGT	3 cut(s)	672, 749, 1046
Bst6I	CTCTTC	4 cut(s)	495, 554, 587, 713
BstACI	GRCGYC	1 cut(s)	26
BstAUI	TGTACA	1 cut(s)	667
BstBAI	YACGTR	1 cut(s)	158
BstBI	TTCGAA	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	569
BstDEI	CTNAG	4 cut(s)	485, 696, 816, 996
BstDSI	CCRYGG	1 cut(s)	217
BstF5I	GGATG	3 cut(s)	300, 748, 913
BstFNI	CGCG	3 cut(s)	219, 468, 473
BstHHI	GCGC	2 cut(s)	468, 473
BstKTI	GATC	5 cut(s)	191, 300, 396, 414, 426
BstMAI	GTCTC	4 cut(s)	33, 297, 650, 981
BstMBI	GATC	5 cut(s)	188, 297, 393, 411, 423
BstMCI	CGRYCG	3 cut(s)	208, 430, 572
BstMWI	GCNNNNNNNGC	3 cut(s)	142, 367, 765
BstNI	CCWGG	1 cut(s)	1007
BstSCI	CCNGG	2 cut(s)	207, 1005
BstUI	CGCG	3 cut(s)	219, 468, 473
BstV2I	GAAGAC	1 cut(s)	29
BstX2I	RGATCY	1 cut(s)	188
BstXI	CCANNNNNNTGG	1 cut(s)	631
BstYI	RGATCY	1 cut(s)	188
BstZI	CGGCCG	2 cut(s)	205, 569
Bsu36I	CCTNAGG	1 cut(s)	696
BsuRI	GGCC	5 cut(s)	153, 207, 483, 567, 571
BtgI	CCRYGG	1 cut(s)	217
BtrI	CACGTC	1 cut(s)	408
BtsCI	GGATG	3 cut(s)	300, 748, 913
BtsI	GCAGTG	1 cut(s)	670
BtsIMutI	CAGTG	2 cut(s)	670, 677
Cac8I	GCNNGC	1 cut(s)	569
CfoI	GCGC	2 cut(s)	468, 473
Cfr10I	RCCGGY	2 cut(s)	444, 567
Cfr13I	GGNCC	5 cut(s)	118, 152, 196, 481, 565
Cfr42I	CCGCGG	1 cut(s)	220
Csp6I	GTAC	3 cut(s)	178, 403, 668
CviAII	CATG	1 cut(s)	18
CviQI	GTAC	3 cut(s)	178, 403, 668
DdeI	CTNAG	4 cut(s)	485, 696, 816, 996
DpnI	GATC	5 cut(s)	190, 299, 395, 413, 425
DpnII	GATC	5 cut(s)	188, 297, 393, 411, 423
EaeI	YGGCCR	2 cut(s)	205, 569
EagI	CGGCCG	2 cut(s)	205, 569
Eam1104I	CTCTTC	4 cut(s)	495, 554, 587, 713
EarI	CTCTTC	4 cut(s)	495, 554, 587, 713
EclXI	CGGCCG	2 cut(s)	205, 569
Eco130I	CCWWGG	1 cut(s)	192
Eco31I	GGTCTC	1 cut(s)	297
Eco47I	GGWCC	2 cut(s)	118, 196
Eco52I	CGGCCG	2 cut(s)	205, 569
Eco72I	CACGTG	1 cut(s)	158
Eco81I	CCTNAGG	1 cut(s)	696
Eco88I	CYCGRG	1 cut(s)	49
EcoO109I	RGGNCCY	1 cut(s)	481
EcoRI	GAATTC	1 cut(s)	505
EcoRII	CCWGG	1 cut(s)	1005
EcoT14I	CCWWGG	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	192
Esp3I	CGTCTC	1 cut(s)	33
FaeI	CATG	1 cut(s)	21
FaiI	YATR	4 cut(s)	19, 924, 1014, 1016
FatI	CATG	1 cut(s)	17
Fnu4HI	GCNGC	2 cut(s)	220, 469
FokI	GGATG	3 cut(s)	307, 755, 920
FseI	GGCCGGCC	1 cut(s)	571
Fsp4HI	GCNGC	2 cut(s)	220, 469
FspBI	CTAG	4 cut(s)	71, 173, 582, 1001
GlaI	GCGC	2 cut(s)	467, 472
GluI	GCNGC	2 cut(s)	220, 469
HaeIII	GGCC	5 cut(s)	153, 207, 483, 567, 571
HapII	CCGG	6 cut(s)	208, 246, 445, 568, 647, 978
HhaI	GCGC	2 cut(s)	468, 473
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	1 cut(s)	21
Hin6I	GCGC	2 cut(s)	466, 471
HinP1I	GCGC	2 cut(s)	466, 471
HinfI	GANTC	7 cut(s)	47, 74, 201, 242, 281, 311, 457
HpaII	CCGG	6 cut(s)	208, 246, 445, 568, 647, 978
Hpy166II	GTNNAC	4 cut(s)	334, 405, 668, 677
Hpy188I	TCNGA	8 cut(s)	14, 92, 200, 302, 462, 488, 511, 613
Hpy188III	TCNNGA	4 cut(s)	51, 421, 624, 647
Hpy8I	GTNNAC	4 cut(s)	334, 405, 668, 677
Hpy99I	CGWCG	3 cut(s)	380, 386, 412
HpyAV	CCTTC	4 cut(s)	431, 447, 490, 1024
HpyCH4III	ACNGT	3 cut(s)	672, 749, 1046
HpyCH4IV	ACGT	3 cut(s)	26, 157, 407
HpyCH4V	TGCA	3 cut(s)	663, 685, 928
HpyF10VI	GCNNNNNNNGC	3 cut(s)	142, 367, 765
HpyF3I	CTNAG	4 cut(s)	485, 696, 816, 996
HpySE526I	ACGT	3 cut(s)	26, 157, 407
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	1 cut(s)	21
HspAI	GCGC	2 cut(s)	466, 471
Kpn2I	TCCGGA	1 cut(s)	646
KroI	GCCGGC	1 cut(s)	567
KroNI	GCCGGC	1 cut(s)	569
KspI	CCGCGG	1 cut(s)	220
Kzo9I	GATC	5 cut(s)	188, 297, 393, 411, 423
LmnI	GCTCC	6 cut(s)	14, 53, 367, 441, 792, 880
LweI	GCATC	1 cut(s)	102
MaeI	CTAG	4 cut(s)	71, 173, 582, 1001
MaeII	ACGT	3 cut(s)	26, 157, 407
MaeIII	GTNAC	1 cut(s)	1040
MalI	GATC	5 cut(s)	190, 299, 395, 413, 425
MboI	GATC	5 cut(s)	188, 297, 393, 411, 423
MboII	GAAGA	7 cut(s)	34, 512, 571, 604, 730, 736, 907
MflI	RGATCY	1 cut(s)	188
MluCI	AATT	4 cut(s)	57, 505, 512, 537
MlyI	GAGTC	3 cut(s)	41, 236, 305
MmeI	TCCRAC	3 cut(s)	342, 345, 591
MroI	TCCGGA	1 cut(s)	646
MroNI	GCCGGC	1 cut(s)	567
MseI	TTAA	3 cut(s)	852, 951, 1048
MspA1I	CMGCKG	1 cut(s)	219
MspI	CCGG	6 cut(s)	208, 246, 445, 568, 647, 978
MspR9I	CCNGG	2 cut(s)	209, 1007
MteI	GCGCNGCGC	1 cut(s)	469
MvaI	CCWGG	1 cut(s)	1007
MvnI	CGCG	3 cut(s)	219, 468, 473
MwoI	GCNNNNNNNGC	3 cut(s)	142, 367, 765
NaeI	GCCGGC	1 cut(s)	569
NciI	CCSGG	1 cut(s)	209
NdeII	GATC	5 cut(s)	188, 297, 393, 411, 423
NgoMIV	GCCGGC	1 cut(s)	567
NlaIII	CATG	1 cut(s)	21
NlaIV	GGNNCC	6 cut(s)	120, 325, 443, 566, 645, 882
NmeAIII	GCCGAG	1 cut(s)	597
NmuCI	GTSAC	1 cut(s)	1040
NspV	TTCGAA	1 cut(s)	279
PcsI	WCGNNNNNNNCGW	4 cut(s)	210, 327, 381, 432
PdiI	GCCGGC	1 cut(s)	569
PfeI	GAWTC	4 cut(s)	74, 201, 281, 457
PfoI	TCCNGGA	1 cut(s)	1005
PkrI	GCNGC	2 cut(s)	221, 470
PleI	GAGTC	3 cut(s)	41, 236, 305
PmaCI	CACGTG	1 cut(s)	158
PmlI	CACGTG	1 cut(s)	158
PpsI	GAGTC	3 cut(s)	41, 236, 305
Ppu21I	YACGTR	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	1005
PspCI	CACGTG	1 cut(s)	158
PspGI	CCWGG	1 cut(s)	1005
PspN4I	GGNNCC	6 cut(s)	120, 325, 443, 566, 645, 882
PspPI	GGNCC	5 cut(s)	118, 152, 196, 481, 565
PsuI	RGATCY	1 cut(s)	188
RigI	GGCCGGCC	1 cut(s)	571
RsaI	GTAC	3 cut(s)	179, 404, 669
RsaNI	GTAC	3 cut(s)	178, 403, 668
SacII	CCGCGG	1 cut(s)	220
SaqAI	TTAA	3 cut(s)	852, 951, 1048
SatI	GCNGC	2 cut(s)	220, 469
Sau3AI	GATC	5 cut(s)	188, 297, 393, 411, 423
Sau96I	GGNCC	5 cut(s)	118, 152, 196, 481, 565
SchI	GAGTC	3 cut(s)	41, 236, 305
ScrFI	CCNGG	2 cut(s)	209, 1007
SfaNI	GCATC	1 cut(s)	102
Sfr303I	CCGCGG	1 cut(s)	220
SfuI	TTCGAA	1 cut(s)	279
SgrBI	CCGCGG	1 cut(s)	220
SinI	GGWCC	2 cut(s)	118, 196
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	4 cut(s)	57, 505, 512, 537
SsiI	CCGC	5 cut(s)	217, 219, 430, 468, 473
SspMI	CTAG	4 cut(s)	71, 173, 582, 1001
StyD4I	CCNGG	2 cut(s)	207, 1005
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	3 cut(s)	672, 749, 1046
TaiI	ACGT	3 cut(s)	29, 160, 410
TaqI	TCGA	7 cut(s)	62, 138, 273, 279, 309, 410, 426
TasI	AATT	4 cut(s)	57, 505, 512, 537
TatI	WGTACW	2 cut(s)	402, 667
TauI	GCSGC	2 cut(s)	222, 471
TfiI	GAWTC	4 cut(s)	74, 201, 281, 457
Tru1I	TTAA	3 cut(s)	852, 951, 1048
Tru9I	TTAA	3 cut(s)	852, 951, 1048
TscAI	CASTG	2 cut(s)	670, 677
TseFI	GTSAC	1 cut(s)	1040
Tsp45I	GTSAC	1 cut(s)	1040
TspGWI	ACGGA	2 cut(s)	336, 406
TspRI	CASTG	2 cut(s)	670, 677
VpaK11BI	GGWCC	2 cut(s)	118, 196
XapI	RAATTY	1 cut(s)	505
XspI	CTAG	4 cut(s)	71, 173, 582, 1001
ZraI	GACGTC	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.