MD16G1211500.v1.1

FHA domain-containing protein At4g14490-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
20017708 .. 20018862
1155 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1211500.v1.1.491

Sequence Viewer

Length: 1155 bp
ATGGAGCCTTCAGCTCTCAAACTGGTAATGGTTCAAGGTCCGCGGAAGGGCGAAACCCTAGAATTCGTACCCGGATCCAAGATCCGAATCGGCCGCGTTGTTCGGGGCAACAACCTCCCGATCAAAGAGTCCGGCATTTCCTCCAAGCACCTCTCCATCGAATCTGAATCGGGCAAATGGGTTCTCCGAGACCTCGACTCCTCAAATGGCACGGTTTTGAATGGGTTGGATATCCCCCCAAATACGCCCGTGGATCTCACCGACGGCGACGAAATCAAAATCGGTGAGTACACTTCCGTCGAGGTGAAGATCGCCGGCTACGAAGAGAGCCGGCTGAGACGGAACCCTAGGCGTGCGGCGGCGGCAGCGGAAGCTACTGCGGTGCCGGTTTTGGAAAGTCGGGGACGGAGAGGTAGGGTTGCGAAGGAGGGCGAGGAGAAAGCGGAGGTGGAAAGAGCGAACGTTGAGGAAATTGAGGTCGCAGGGAAACGAGGGAGGGGCCGACCGCCCAGAGCTAGGGTTTTGAAGAGTGAAGCTGCAGAGGAAGACTTGGCACGGCAGGTGAGTACGAGGCAAACTCGGAGCTCCAGGATTGAGGAATTGGGGAAGATTCCAGAGAACTCTGGTGTAGATAGTGAAGGAGTGAACGTTGAGCCGAAAAGGACCCATGTTGGTGCAAGGAGGAGGAAAAATGTACCGGAGGAGGTACCGGTGTGTGATAAGCTTGATGTTAAGGAGGAAGAGGCTTCGAAAGGGCTGAATTTGGAGGAAGAGAGACATGAAGAGTTAAATGTTAGAGGAGAGAGTGGCGAAAAGGGTAAATATGGAAGTGGGAGTGGTGAAAAGGGTGAGAAAGGAAGTGGAAGTGGTGAAATCGGTGTCAATGGAAGTGGGAGTGGCGTTAAGGGCGACAACGGTAGTGGGAGTGGTTCAGGTGTAAATGAGAGCTGTGACTTGGAGAAGATGACGCTTGGGGAGTGGTTTGATTTTTTGGAGAGGAATTTTCCACAACAGATCATTGATGAGACGGAGGAGGCAATTGCCGAAATGACAGAGAAAGCTAAGCGAATTCAGGAGTACATTGTGCAGGAGAAGGAGAAGGCGAAAGTGCTTGTGGGCTACAAGGGGGGAGCTGGGACTTGTGTTTTCTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

385

Amino Acids

41.75

Weight (kDa)

5.44

Isoelectric Point (pI)

47.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yop-YscD_cpl PF16697 11 - 96 1.5e-08 Inner membrane component of T3SS, cytoplasmic domain
FHA PF00498 28 - 95 1.1e-16 FHA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 550
Acc36I ACCTGC 1 cut(s) 550
Acc65I GGTACC 1 cut(s) 706
AccB1I GGYRCC 2 cut(s) 382, 706
AccII CGCG 2 cut(s) 43, 96
AclI AACGTT 2 cut(s) 462, 648
AclWI GGATC 4 cut(s) 69, 76, 82, 261
AcoI YGGCCR 1 cut(s) 91
AcsI RAATTY 4 cut(s) 62, 760, 1000, 1068
AfaI GTAC 6 cut(s) 69, 290, 568, 696, 708, 1079
AfiI CCNNNNNNNGG 2 cut(s) 47, 516
AgeI ACCGGT 1 cut(s) 709
AgsI TTSAA 3 cut(s) 35, 220, 526
AjnI CCWGG 1 cut(s) 587
AluBI AGCT 9 cut(s) 14, 374, 515, 536, 585, 724, 948, 1061, 1133
AluI AGCT 9 cut(s) 14, 374, 515, 536, 585, 724, 948, 1061, 1133
Alw21I GWGCWC 1 cut(s) 587
Alw26I GTCTC 4 cut(s) 183, 331, 769, 1019
AlwI GGATC 4 cut(s) 69, 76, 82, 261
AoxI GGCC 2 cut(s) 91, 499
ApeKI GCWGC 2 cut(s) 365, 536
ApoI RAATTY 4 cut(s) 62, 760, 1000, 1068
AsiGI ACCGGT 1 cut(s) 709
Asp718I GGTACC 1 cut(s) 706
AspA2I CCTAGG 1 cut(s) 347
AspS9I GGNCC 3 cut(s) 38, 499, 663
AsuC2I CCSGG 1 cut(s) 72
AsuHPI GGTGA 7 cut(s) 250, 296, 316, 574, 851, 860, 881
AsuII TTCGAA 1 cut(s) 749
AvaII GGWCC 2 cut(s) 38, 663
AvrII CCTAGG 1 cut(s) 347
BaeI ACNNNNGTAYC 2 cut(s) 698, 731
BamHI GGATCC 1 cut(s) 74
BanI GGYRCC 2 cut(s) 382, 706
BanII GRGCYC 1 cut(s) 587
BbsI GAAGAC 1 cut(s) 552
Bbv12I GWGCWC 1 cut(s) 587
BbvI GCAGC 2 cut(s) 377, 523
BccI CCATC 1 cut(s) 164
BceAI ACGGC 2 cut(s) 280, 572
BciT130I CCWGG 1 cut(s) 589
BcnI CCSGG 1 cut(s) 72
BcoDI GTCTC 4 cut(s) 183, 331, 769, 1019
BfaI CTAG 3 cut(s) 59, 348, 516
BfmI CTRYAG 1 cut(s) 537
BfuAI ACCTGC 1 cut(s) 550
BisI GCNGC 6 cut(s) 94, 357, 360, 363, 366, 537
BlnI CCTAGG 1 cut(s) 347
BlpI GCTNAGC 1 cut(s) 1062
BlsI GCNGC 6 cut(s) 95, 358, 361, 364, 367, 538
Bme1390I CCNGG 2 cut(s) 72, 589
Bme18I GGWCC 2 cut(s) 38, 663
BmgT120I GGNCC 3 cut(s) 38, 499, 663
BmiI GGNNCC 7 cut(s) 6, 76, 344, 384, 500, 665, 708
BmrFI CCNGG 2 cut(s) 72, 589
BpiI GAAGAC 1 cut(s) 552
BplI GAGNNNNNCTC 2 cut(s) 562, 594
BpmI CTGGAG 1 cut(s) 571
Bpu1102I GCTNAGC 1 cut(s) 1062
Bpu14I TTCGAA 1 cut(s) 749
BpuMI CCSGG 1 cut(s) 72
BsaBI GATNNNNATC 1 cut(s) 86
BsaI GGTCTC 1 cut(s) 183
BsaJI CCNNGG 3 cut(s) 41, 249, 347
BsaWI WCCGGW 2 cut(s) 697, 709
BsaXI ACNNNNNCTCC 4 cut(s) 182, 212, 633, 663
Bsc4I CCNNNNNNNGG 2 cut(s) 47, 516
Bse118I RCCGGY 4 cut(s) 314, 330, 385, 709
Bse1I ACTGG 1 cut(s) 27
Bse8I GATNNNNATC 1 cut(s) 86
BseBI CCWGG 1 cut(s) 589
BseDI CCNNGG 3 cut(s) 41, 249, 347
BseJI GATNNNNATC 1 cut(s) 86
BseLI CCNNNNNNNGG 2 cut(s) 47, 516
BseMII CTCAG 1 cut(s) 326
BseNI ACTGG 1 cut(s) 27
BseRI GAGGAG 6 cut(s) 190, 449, 697, 716, 813, 1046
BseX3I CGGCCG 1 cut(s) 91
BseXI GCAGC 2 cut(s) 377, 523
BseYI CCCAGC 1 cut(s) 1133
BsgI GTGCAG 1 cut(s) 1106
Bsh1236I CGCG 2 cut(s) 43, 96
Bsh1285I CGRYCG 2 cut(s) 94, 506
BshFI GGCC 2 cut(s) 93, 501
BshNI GGYRCC 2 cut(s) 382, 706
BshTI ACCGGT 1 cut(s) 709
BsiEI CGRYCG 2 cut(s) 94, 506
BsiHKAI GWGCWC 1 cut(s) 587
BsiSI CCGG 7 cut(s) 72, 132, 315, 331, 386, 698, 710
BslFI GGGAC 2 cut(s) 417, 1150
BslI CCNNNNNNNGG 2 cut(s) 47, 516
BsmAI GTCTC 4 cut(s) 183, 331, 769, 1019
BsmBI CGTCTC 2 cut(s) 331, 1019
BsmFI GGGAC 2 cut(s) 417, 1150
BsnI GGCC 2 cut(s) 93, 501
Bso31I GGTCTC 1 cut(s) 183
Bsp119I TTCGAA 1 cut(s) 749
Bsp1286I GDGCHC 1 cut(s) 587
Bsp143I GATC 6 cut(s) 74, 81, 120, 253, 309, 1014
Bsp1720I GCTNAGC 1 cut(s) 1062
BspANI GGCC 2 cut(s) 93, 501
BspCNI CTCAG 1 cut(s) 327
BspFNI CGCG 2 cut(s) 43, 96
BspLI GGNNCC 7 cut(s) 6, 76, 344, 384, 500, 665, 708
BspMAI CTGCAG 1 cut(s) 541
BspMI ACCTGC 1 cut(s) 550
BspPI GGATC 4 cut(s) 69, 76, 82, 261
BspT104I TTCGAA 1 cut(s) 749
BspT107I GGYRCC 2 cut(s) 382, 706
BspTNI GGTCTC 1 cut(s) 183
BsrFI RCCGGY 4 cut(s) 314, 330, 385, 709
BsrI ACTGG 1 cut(s) 27
BssAI RCCGGY 4 cut(s) 314, 330, 385, 709
BssECI CCNNGG 3 cut(s) 41, 249, 347
BssMI GATC 6 cut(s) 74, 81, 120, 253, 309, 1014
BssT1I CCWWGG 1 cut(s) 347
Bst2UI CCWGG 1 cut(s) 589
Bst4CI ACNGT 2 cut(s) 214, 917
Bst6I CTCTTC 5 cut(s) 318, 521, 735, 765, 777
BstBI TTCGAA 1 cut(s) 749
BstC8I GCNNGC 3 cut(s) 316, 332, 354
BstDEI CTNAG 2 cut(s) 335, 1062
BstDSI CCRYGG 2 cut(s) 41, 249
BstFNI CGCG 2 cut(s) 43, 96
BstKTI GATC 6 cut(s) 77, 84, 123, 256, 312, 1017
BstMAI GTCTC 4 cut(s) 183, 331, 769, 1019
BstMBI GATC 6 cut(s) 74, 81, 120, 253, 309, 1014
BstMCI CGRYCG 2 cut(s) 94, 506
BstMWI GCNNNNNNNGC 4 cut(s) 362, 365, 371, 906
BstNI CCWGG 1 cut(s) 589
BstSCI CCNGG 2 cut(s) 70, 587
BstSFI CTRYAG 1 cut(s) 537
BstUI CGCG 2 cut(s) 43, 96
BstV1I GCAGC 2 cut(s) 377, 523
BstV2I GAAGAC 1 cut(s) 552
BstX2I RGATCY 3 cut(s) 74, 81, 253
BstYI RGATCY 3 cut(s) 74, 81, 253
BstZI CGGCCG 1 cut(s) 91
BsuRI GGCC 2 cut(s) 93, 501
BtgI CCRYGG 2 cut(s) 41, 249
BveI ACCTGC 1 cut(s) 550
Cac8I GCNNGC 3 cut(s) 316, 332, 354
Cfr10I RCCGGY 4 cut(s) 314, 330, 385, 709
Cfr13I GGNCC 3 cut(s) 38, 499, 663
Cfr42I CCGCGG 1 cut(s) 44
CseI GACGC 1 cut(s) 976
Csp6I GTAC 6 cut(s) 68, 289, 567, 695, 707, 1078
CspAI ACCGGT 1 cut(s) 709
CspCI CAANNNNNGTGG 4 cut(s) 871, 901, 906, 936
CviAII CATG 2 cut(s) 668, 779
CviQI GTAC 6 cut(s) 68, 289, 567, 695, 707, 1078
DdeI CTNAG 2 cut(s) 335, 1062
DpnI GATC 6 cut(s) 76, 83, 122, 255, 311, 1016
DpnII GATC 6 cut(s) 74, 81, 120, 253, 309, 1014
EaeI YGGCCR 1 cut(s) 91
EagI CGGCCG 1 cut(s) 91
Eam1104I CTCTTC 5 cut(s) 318, 521, 735, 765, 777
EarI CTCTTC 5 cut(s) 318, 521, 735, 765, 777
Ecl136II GAGCTC 1 cut(s) 585
EclXI CGGCCG 1 cut(s) 91
Eco130I CCWWGG 1 cut(s) 347
Eco24I GRGCYC 1 cut(s) 587
Eco31I GGTCTC 1 cut(s) 183
Eco32I GATATC 1 cut(s) 232
Eco47I GGWCC 2 cut(s) 38, 663
Eco52I CGGCCG 1 cut(s) 91
Eco53kI GAGCTC 1 cut(s) 585
EcoICRI GAGCTC 1 cut(s) 585
EcoO109I RGGNCCY 1 cut(s) 663
EcoRI GAATTC 2 cut(s) 62, 1068
EcoRII CCWGG 1 cut(s) 587
EcoRV GATATC 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 347
EcoT38I GRGCYC 1 cut(s) 587
ErhI CCWWGG 1 cut(s) 347
Esp3I CGTCTC 2 cut(s) 331, 1019
FaeI CATG 2 cut(s) 671, 782
FaiI YATR 3 cut(s) 669, 780, 825
FaqI GGGAC 2 cut(s) 417, 1150
FatI CATG 2 cut(s) 667, 778
Fnu4HI GCNGC 6 cut(s) 94, 357, 360, 363, 366, 537
FriOI GRGCYC 1 cut(s) 587
Fsp4HI GCNGC 6 cut(s) 94, 357, 360, 363, 366, 537
FspBI CTAG 3 cut(s) 59, 348, 516
GluI GCNGC 6 cut(s) 94, 357, 360, 363, 366, 537
GsaI CCCAGC 1 cut(s) 1137
GsuI CTGGAG 1 cut(s) 571
HaeIII GGCC 2 cut(s) 93, 501
HapII CCGG 7 cut(s) 72, 132, 315, 331, 386, 698, 710
HgaI GACGC 1 cut(s) 976
Hin1II CATG 2 cut(s) 671, 782
HindIII AAGCTT 1 cut(s) 722
HinfI GANTC 6 cut(s) 87, 128, 161, 167, 197, 610
HpaII CCGG 7 cut(s) 72, 132, 315, 331, 386, 698, 710
HphI GGTGA 7 cut(s) 250, 296, 316, 574, 851, 860, 881
Hpy166II GTNNAC 2 cut(s) 291, 646
Hpy188I TCNGA 4 cut(s) 86, 166, 188, 582
Hpy188III TCNNGA 3 cut(s) 118, 614, 1073
Hpy8I GTNNAC 2 cut(s) 291, 646
Hpy99I CGWCG 3 cut(s) 266, 272, 302
HpyAV CCTTC 6 cut(s) 18, 40, 418, 632, 1087, 1093
HpyCH4III ACNGT 2 cut(s) 214, 917
HpyCH4IV ACGT 2 cut(s) 462, 648
HpyCH4V TGCA 3 cut(s) 539, 677, 1087
HpyF10VI GCNNNNNNNGC 4 cut(s) 362, 365, 371, 906
HpyF3I CTNAG 2 cut(s) 335, 1062
HpySE526I ACGT 2 cut(s) 462, 648
Hsp92II CATG 2 cut(s) 671, 782
KpnI GGTACC 1 cut(s) 710
KroI GCCGGC 2 cut(s) 314, 330
KroNI GCCGGC 2 cut(s) 316, 332
KspI CCGCGG 1 cut(s) 44
Kzo9I GATC 6 cut(s) 74, 81, 120, 253, 309, 1014
LmnI GCTCC 4 cut(s) 4, 582, 590, 1130
Lsp1109I GCAGC 2 cut(s) 377, 523
MaeI CTAG 3 cut(s) 59, 348, 516
MaeII ACGT 2 cut(s) 462, 648
MaeIII GTNAC 1 cut(s) 950
MalI GATC 6 cut(s) 76, 83, 122, 255, 311, 1016
MboI GATC 6 cut(s) 74, 81, 120, 253, 309, 1014
MboII GAAGA 9 cut(s) 319, 335, 538, 557, 619, 752, 782, 794, 973
MfeI CAATTG 1 cut(s) 1038
MflI RGATCY 3 cut(s) 74, 81, 253
MhlI GDGCHC 1 cut(s) 587
MluCI AATT 7 cut(s) 62, 471, 599, 760, 1000, 1038, 1068
MlyI GAGTC 2 cut(s) 137, 191
MmeI TCCRAC 1 cut(s) 207
MroNI GCCGGC 2 cut(s) 314, 330
MseI TTAA 3 cut(s) 732, 788, 903
MslI CAYNNNNRTG 1 cut(s) 672
MspA1I CMGCKG 2 cut(s) 43, 368
MspI CCGG 7 cut(s) 72, 132, 315, 331, 386, 698, 710
MspR9I CCNGG 2 cut(s) 72, 589
MunI CAATTG 1 cut(s) 1038
MvaI CCWGG 1 cut(s) 589
MvnI CGCG 2 cut(s) 43, 96
MwoI GCNNNNNNNGC 4 cut(s) 362, 365, 371, 906
NaeI GCCGGC 2 cut(s) 316, 332
NciI CCSGG 1 cut(s) 72
NdeII GATC 6 cut(s) 74, 81, 120, 253, 309, 1014
NgoMIV GCCGGC 2 cut(s) 314, 330
NlaIII CATG 2 cut(s) 671, 782
NlaIV GGNNCC 7 cut(s) 6, 76, 344, 384, 500, 665, 708
NmuCI GTSAC 1 cut(s) 950
NspV TTCGAA 1 cut(s) 749
PaqCI CACCTGC 1 cut(s) 550
PcsI WCGNNNNNNNCGW 1 cut(s) 318
PdiI GCCGGC 2 cut(s) 316, 332
PfeI GAWTC 4 cut(s) 87, 161, 167, 610
PfoI TCCNGGA 1 cut(s) 587
PinAI ACCGGT 1 cut(s) 709
PkrI GCNGC 6 cut(s) 95, 358, 361, 364, 367, 538
PleI GAGTC 2 cut(s) 136, 191
PpsI GAGTC 2 cut(s) 136, 191
PpuMI RGGWCCY 1 cut(s) 663
Psp124BI GAGCTC 1 cut(s) 587
Psp1406I AACGTT 2 cut(s) 462, 648
Psp5II RGGWCCY 1 cut(s) 663
Psp6I CCWGG 1 cut(s) 587
PspFI CCCAGC 1 cut(s) 1133
PspGI CCWGG 1 cut(s) 587
PspN4I GGNNCC 7 cut(s) 6, 76, 344, 384, 500, 665, 708
PspPI GGNCC 3 cut(s) 38, 499, 663
PspPPI RGGWCCY 1 cut(s) 663
PstI CTGCAG 1 cut(s) 541
PsuI RGATCY 3 cut(s) 74, 81, 253
RsaI GTAC 6 cut(s) 69, 290, 568, 696, 708, 1079
RsaNI GTAC 6 cut(s) 68, 289, 567, 695, 707, 1078
RseI CAYNNNNRTG 1 cut(s) 672
SacI GAGCTC 1 cut(s) 587
SacII CCGCGG 1 cut(s) 44
SaqAI TTAA 3 cut(s) 732, 788, 903
SatI GCNGC 6 cut(s) 94, 357, 360, 363, 366, 537
Sau3AI GATC 6 cut(s) 74, 81, 120, 253, 309, 1014
Sau96I GGNCC 3 cut(s) 38, 499, 663
SchI GAGTC 2 cut(s) 137, 191
ScrFI CCNGG 2 cut(s) 72, 589
SduI GDGCHC 1 cut(s) 587
SfcI CTRYAG 1 cut(s) 537
Sfr303I CCGCGG 1 cut(s) 44
SfuI TTCGAA 1 cut(s) 749
SgrBI CCGCGG 1 cut(s) 44
SinI GGWCC 2 cut(s) 38, 663
SmiMI CAYNNNNRTG 1 cut(s) 672
Sse9I AATT 7 cut(s) 62, 471, 599, 760, 1000, 1038, 1068
SspMI CTAG 3 cut(s) 59, 348, 516
SstI GAGCTC 1 cut(s) 587
StyD4I CCNGG 2 cut(s) 70, 587
StyI CCWWGG 1 cut(s) 347
TaaI ACNGT 2 cut(s) 214, 917
TaiI ACGT 2 cut(s) 465, 651
TaqI TCGA 4 cut(s) 159, 195, 300, 749
TasI AATT 7 cut(s) 62, 471, 599, 760, 1000, 1038, 1068
TatI WGTACW 2 cut(s) 288, 1077
TauI GCSGC 4 cut(s) 96, 359, 362, 365
TfiI GAWTC 4 cut(s) 87, 161, 167, 610
Tru1I TTAA 3 cut(s) 732, 788, 903
Tru9I TTAA 3 cut(s) 732, 788, 903
TseFI GTSAC 1 cut(s) 950
TseI GCWGC 2 cut(s) 365, 536
Tsp45I GTSAC 1 cut(s) 950
TspDTI ATGAA 1 cut(s) 795
TspGWI ACGGA 4 cut(s) 286, 355, 421, 1043
VpaK11BI GGWCC 2 cut(s) 38, 663
XapI RAATTY 4 cut(s) 62, 760, 1000, 1068
XmaJI CCTAGG 1 cut(s) 347
XspI CTAG 3 cut(s) 59, 348, 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.