FvH4_4g02980

FHA domain-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
2618364 .. 2624426
6063 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g02980.t3

Sequence Viewer

Length: 1563 bp
ATGGTTTTATCCGATCTATCATTTCCCTCTGAAACCCCATTTTCAAAACTCAAAAAAATGGAGCCTTTAGCTCTGAAGCTGGAAATACTCAAAGGCCCCCGAAAGGGCGAAACCCTAGAGTACCGACCCGGATCCAAGATCCGAATCGGCCGGGTCGTCCGCGGCAACAACCTCCCCATCAAAGACTCCGGCATCTCCACCAACCACCTCGTCATCGACTCCGAATCGGGTCAATGGATGGTCCGAGACCTCGACTCCTCCAACGGAACCATAGTCAACGACACCGCGCTCAACCCGAACACGCCGTTCGAGCTCAGCGACGGCGACGAAATCAAGATCGGGGAGTACACCTCGATCTCCGTGAAGATCGACGGCCACGAAGAAGCGAGCAAACTGAGAAGGAATCCGAGGCGCGCCGCCGTGGGAAAGGTGGGTGCGGCGGCGGCGAATCGCGGCCGGAGAGGTAGGGTTGGGGCGGAGAGTGAAGTAGTTCAAGTAGAAGTGAAATCGGAGAATCATGAGGAAATCGGTGGAGGAGAAGATAGGGTTCTGGCCAGGAGAGGTAGAGTGAGGAAGAAGAATGAGGTGGAGTCTGATTTGGAGGAAATCGAGGTGGTGGAGAAGCCGAAGAGGGGCAGTGGCCGGCCGAAGAAAGCTACGGTTTTGAAGAGTGAGGAGGATGTGGTGGAGGAGGTTGCTGTGCCGGAAGTGAGTTCTAGAGCAGCTACAAGGTCTAAGAATGTGGTTCTGGAATCGGAGAATTGCAGTGTAGAGTGTGAGCAAGTGAAGATCGAACCTAAGAGGCGTGGTAGGAAGAGGAAGAATGTGCAAGAAGAGCAGCTGGTGTGTGAGAAAGGTAATGCTGTTGCGGTAGAGAAGGATTTGGGAGTAGCTGTGCTGGTTGGTGTTAGTTGCGATAATGATGTTAAGGGTGATGTCCCGGAGCAGAAGGATTCAGGAGAAATTGGCCCGGTCAATGATGGTGATGCTAACAGGTTGAATTTGGGGAATGAACGTAAGAGGCGTGGTAGGAATAGGAATAATGAGCAACAAGAACAGCTAGTGTGTGAGACAGGTAATGCTGTTGTTTCGGAGCAGAAGAATTTGGGAGAAATTGGTCCAGTTGATGATGATGATGATAAGGGGTTGAATTTGGGGGATGAGAGGCATGAAGAGGCAGCAGGTGGTTTTGATGTGGGAGAGAATGTCATTGATAACGAGAAGGCAAAAGAGTCCAATGAAGAGGCAGCCATTGACTGTAATGTTGGAGAGGGTGGCGATATGGTTGAAAGTGGTAGTAGGAGCTGTTCTGGTGCTAGTAGTTCTAAGGATGTTGATAAAAAGGGGAGTGGTTCTGGTATTAAAGAAGGTTTGGGAAAGGTTTGGCAGGAGGAGCCAGATTTGGAGAAGATGACTTTGGATGATTGGTTTGATTATGTGGAAGTTTCTTGGCCAAAAGTGGTAAATGATGAGATTGACAAGATTTGTGCCGGAATGAGAGAGAAAGCTAGGCTAGTCCAGGAGTATATAGCACAACACAAGAAGGTGAAGGTTCAAAGTTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

521

Amino Acids

56.94

Weight (kDa)

5.14

Isoelectric Point (pI)

44.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Yop-YscD_cpl PF16697 28 - 115 6e-10 Inner membrane component of T3SS, cytoplasmic domain
FHA PF00498 47 - 114 8.5e-17 FHA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1172
Acc36I ACCTGC 1 cut(s) 1172
AccII CGCG 4 cut(s) 162, 287, 414, 453
AclWI GGATC 3 cut(s) 126, 133, 139
AcoI YGGCCR 7 cut(s) 148, 373, 454, 552, 640, 644, 1451
AcsI RAATTY 3 cut(s) 1000, 1102, 1150
AcuI CTGAAG 1 cut(s) 95
AfaI GTAC 2 cut(s) 122, 347
AfiI CCNNNNNNNGG 3 cut(s) 103, 104, 632
AgsI TTSAA 7 cut(s) 45, 494, 667, 1000, 1150, 1289, 1556
AjnI CCWGG 2 cut(s) 554, 1518
AjuI GAANNNNNNNTTGG 2 cut(s) 1400, 1432
Alw21I GWGCWC 1 cut(s) 315
Alw26I GTCTC 2 cut(s) 240, 1064
AlwI GGATC 3 cut(s) 126, 133, 139
AoxI GGCC 9 cut(s) 94, 148, 373, 454, 552, 640, 644, 967, 1451
ApeKI GCWGC 4 cut(s) 722, 838, 1178, 1247
ApoI RAATTY 3 cut(s) 1000, 1102, 1150
AscI GGCGCGCC 1 cut(s) 412
Asp700I GAANNNNTTC 1 cut(s) 489
AspLEI GCGC 3 cut(s) 289, 414, 416
AspS9I GGNCC 4 cut(s) 95, 241, 968, 1118
AsuC2I CCSGG 4 cut(s) 129, 152, 941, 971
AsuHPI GGTGA 3 cut(s) 944, 995, 1558
AvaII GGWCC 2 cut(s) 241, 1118
BalI TGGCCA 2 cut(s) 554, 1453
BamHI GGATCC 1 cut(s) 131
BanII GRGCYC 1 cut(s) 315
Bbv12I GWGCWC 1 cut(s) 315
BbvI GCAGC 4 cut(s) 734, 850, 1190, 1259
BccI CCATC 3 cut(s) 185, 232, 974
BceAI ACGGC 4 cut(s) 289, 337, 388, 404
BciT130I CCWGG 2 cut(s) 556, 1520
BcnI CCSGG 4 cut(s) 129, 152, 941, 971
BcoDI GTCTC 2 cut(s) 240, 1064
BfaI CTAG 6 cut(s) 116, 717, 1061, 1317, 1509, 1514
BfuAI ACCTGC 1 cut(s) 1172
BlpI GCTNAGC 1 cut(s) 314
Bme1390I CCNGG 6 cut(s) 129, 152, 556, 941, 971, 1520
Bme18I GGWCC 2 cut(s) 241, 1118
BmgT120I GGNCC 4 cut(s) 95, 241, 968, 1118
BmiI GGNNCC 5 cut(s) 63, 97, 133, 268, 1395
BmrFI CCNGG 6 cut(s) 129, 152, 556, 941, 971, 1520
BmsI GCATC 2 cut(s) 201, 976
BplI GAGNNNNNCTC 2 cut(s) 335, 367
Bpu1102I GCTNAGC 1 cut(s) 314
BpuMI CCSGG 4 cut(s) 129, 152, 941, 971
BsaBI GATNNNNATC 1 cut(s) 143
BsaI GGTCTC 1 cut(s) 240
BsaJI CCNNGG 3 cut(s) 160, 407, 420
BsaXI ACNNNNNCTCC 6 cut(s) 239, 269, 879, 909, 1191, 1221
Bsc4I CCNNNNNNNGG 3 cut(s) 103, 104, 632
Bse118I RCCGGY 1 cut(s) 642
Bse1I ACTGG 1 cut(s) 1121
Bse8I GATNNNNATC 1 cut(s) 143
BseBI CCWGG 2 cut(s) 556, 1520
BseDI CCNNGG 3 cut(s) 160, 407, 420
BseGI GGATG 5 cut(s) 243, 685, 1165, 1336, 1426
BseJI GATNNNNATC 1 cut(s) 143
BseLI CCNNNNNNNGG 3 cut(s) 103, 104, 632
BseMII CTCAG 2 cut(s) 328, 386
BseNI ACTGG 1 cut(s) 1121
BsePI GCGCGC 1 cut(s) 412
BseRI GAGGAG 5 cut(s) 247, 549, 689, 704, 1406
BseX3I CGGCCG 3 cut(s) 148, 454, 644
BseXI GCAGC 4 cut(s) 734, 850, 1190, 1259
Bsh1236I CGCG 4 cut(s) 162, 287, 414, 453
Bsh1285I CGRYCG 3 cut(s) 151, 457, 647
BshFI GGCC 9 cut(s) 96, 150, 375, 456, 554, 642, 646, 969, 1453
BsiEI CGRYCG 3 cut(s) 151, 457, 647
BsiHKAI GWGCWC 1 cut(s) 315
BsiSI CCGG 9 cut(s) 129, 151, 189, 457, 643, 704, 941, 971, 1491
BslFI GGGAC 1 cut(s) 923
BslI CCNNNNNNNGG 3 cut(s) 103, 104, 632
BsmAI GTCTC 2 cut(s) 240, 1064
BsmFI GGGAC 1 cut(s) 923
BsnI GGCC 9 cut(s) 96, 150, 375, 456, 554, 642, 646, 969, 1453
Bso31I GGTCTC 1 cut(s) 240
Bsp1286I GDGCHC 1 cut(s) 315
Bsp143I GATC 7 cut(s) 13, 131, 138, 336, 354, 366, 789
Bsp1720I GCTNAGC 1 cut(s) 314
BspANI GGCC 9 cut(s) 96, 150, 375, 456, 554, 642, 646, 969, 1453
BspCNI CTCAG 2 cut(s) 327, 387
BspFNI CGCG 4 cut(s) 162, 287, 414, 453
BspHI TCATGA 1 cut(s) 517
BspLI GGNNCC 5 cut(s) 63, 97, 133, 268, 1395
BspMI ACCTGC 1 cut(s) 1172
BspPI GGATC 3 cut(s) 126, 133, 139
BspQI GCTCTTC 1 cut(s) 828
BspTNI GGTCTC 1 cut(s) 240
BsrFI RCCGGY 1 cut(s) 642
BsrI ACTGG 1 cut(s) 1121
BssAI RCCGGY 1 cut(s) 642
BssECI CCNNGG 3 cut(s) 160, 407, 420
BssHII GCGCGC 1 cut(s) 412
BssMI GATC 7 cut(s) 13, 131, 138, 336, 354, 366, 789
Bst2UI CCWGG 2 cut(s) 556, 1520
Bst4CI ACNGT 2 cut(s) 661, 1259
Bst6I CTCTTC 6 cut(s) 623, 662, 809, 828, 1167, 1236
BstC8I GCNNGC 3 cut(s) 388, 414, 644
BstDEI CTNAG 5 cut(s) 314, 395, 735, 798, 1326
BstDSI CCRYGG 2 cut(s) 160, 420
BstF5I GGATG 5 cut(s) 243, 685, 1165, 1336, 1426
BstFNI CGCG 4 cut(s) 162, 287, 414, 453
BstHHI GCGC 3 cut(s) 289, 414, 416
BstKTI GATC 7 cut(s) 16, 134, 141, 339, 357, 369, 792
BstMAI GTCTC 2 cut(s) 240, 1064
BstMBI GATC 7 cut(s) 13, 131, 138, 336, 354, 366, 789
BstMCI CGRYCG 3 cut(s) 151, 457, 647
BstMWI GCNNNNNNNGC 4 cut(s) 310, 443, 835, 1393
BstNI CCWGG 2 cut(s) 556, 1520
BstSCI CCNGG 6 cut(s) 127, 150, 554, 939, 969, 1518
BstUI CGCG 4 cut(s) 162, 287, 414, 453
BstV1I GCAGC 4 cut(s) 734, 850, 1190, 1259
BstX2I RGATCY 2 cut(s) 131, 138
BstYI RGATCY 2 cut(s) 131, 138
BstZI CGGCCG 3 cut(s) 148, 454, 644
BsuRI GGCC 9 cut(s) 96, 150, 375, 456, 554, 642, 646, 969, 1453
BtgI CCRYGG 2 cut(s) 160, 420
BtsCI GGATG 5 cut(s) 243, 685, 1165, 1336, 1426
BtsI GCAGTG 2 cut(s) 643, 772
BtsIMutI CAGTG 2 cut(s) 643, 772
BveI ACCTGC 1 cut(s) 1172
Cac8I GCNNGC 3 cut(s) 388, 414, 644
CciI TCATGA 1 cut(s) 517
CfoI GCGC 3 cut(s) 289, 414, 416
Cfr10I RCCGGY 1 cut(s) 642
Cfr13I GGNCC 4 cut(s) 95, 241, 968, 1118
Cfr42I CCGCGG 1 cut(s) 163
Csp6I GTAC 2 cut(s) 121, 346
CviAII CATG 2 cut(s) 518, 1169
CviQI GTAC 2 cut(s) 121, 346
DdeI CTNAG 5 cut(s) 314, 395, 735, 798, 1326
DpnI GATC 7 cut(s) 15, 133, 140, 338, 356, 368, 791
DpnII GATC 7 cut(s) 13, 131, 138, 336, 354, 366, 789
EaeI YGGCCR 7 cut(s) 148, 373, 454, 552, 640, 644, 1451
EagI CGGCCG 3 cut(s) 148, 454, 644
Eam1104I CTCTTC 6 cut(s) 623, 662, 809, 828, 1167, 1236
EarI CTCTTC 6 cut(s) 623, 662, 809, 828, 1167, 1236
EciI GGCGGA 1 cut(s) 491
Ecl136II GAGCTC 1 cut(s) 313
EclXI CGGCCG 3 cut(s) 148, 454, 644
Eco24I GRGCYC 1 cut(s) 315
Eco31I GGTCTC 1 cut(s) 240
Eco47I GGWCC 2 cut(s) 241, 1118
Eco52I CGGCCG 3 cut(s) 148, 454, 644
Eco53kI GAGCTC 1 cut(s) 313
Eco57I CTGAAG 1 cut(s) 95
EcoICRI GAGCTC 1 cut(s) 313
EcoO109I RGGNCCY 1 cut(s) 95
EcoRII CCWGG 2 cut(s) 554, 1518
EcoT38I GRGCYC 1 cut(s) 315
FaeI CATG 2 cut(s) 521, 1172
FaiI YATR 7 cut(s) 272, 519, 1170, 1283, 1437, 1527, 1529
FaqI GGGAC 1 cut(s) 923
FatI CATG 2 cut(s) 517, 1168
FokI GGATG 5 cut(s) 250, 692, 1172, 1343, 1433
FriOI GRGCYC 1 cut(s) 315
FseI GGCCGGCC 1 cut(s) 646
FspBI CTAG 6 cut(s) 116, 717, 1061, 1317, 1509, 1514
GlaI GCGC 3 cut(s) 288, 413, 415
HaeIII GGCC 9 cut(s) 96, 150, 375, 456, 554, 642, 646, 969, 1453
HapII CCGG 9 cut(s) 129, 151, 189, 457, 643, 704, 941, 971, 1491
HhaI GCGC 3 cut(s) 289, 414, 416
Hin1II CATG 2 cut(s) 521, 1172
Hin6I GCGC 3 cut(s) 287, 412, 414
HinP1I GCGC 3 cut(s) 287, 412, 414
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HpaII CCGG 9 cut(s) 129, 151, 189, 457, 643, 704, 941, 971, 1491
HphI GGTGA 3 cut(s) 944, 995, 1558
Hpy166II GTNNAC 2 cut(s) 277, 348
Hpy188III TCNNGA 5 cut(s) 334, 518, 717, 749, 957
Hpy8I GTNNAC 2 cut(s) 277, 348
Hpy99I CGWCG 3 cut(s) 323, 329, 374
HpyAV CCTTC 7 cut(s) 393, 871, 943, 1216, 1361, 1537, 1543
HpyCH4III ACNGT 2 cut(s) 661, 1259
HpyCH4IV ACGT 1 cut(s) 1015
HpyCH4V TGCA 2 cut(s) 765, 829
HpyF10VI GCNNNNNNNGC 4 cut(s) 310, 443, 835, 1393
HpyF3I CTNAG 5 cut(s) 314, 395, 735, 798, 1326
HpySE526I ACGT 1 cut(s) 1015
Hsp92II CATG 2 cut(s) 521, 1172
HspAI GCGC 3 cut(s) 287, 412, 414
KroI GCCGGC 1 cut(s) 642
KroNI GCCGGC 1 cut(s) 644
KspI CCGCGG 1 cut(s) 163
Kzo9I GATC 7 cut(s) 13, 131, 138, 336, 354, 366, 789
LguI GCTCTTC 1 cut(s) 828
LmnI GCTCC 5 cut(s) 61, 943, 1093, 1302, 1393
Lsp1109I GCAGC 4 cut(s) 734, 850, 1190, 1259
LweI GCATC 2 cut(s) 201, 976
MaeI CTAG 6 cut(s) 116, 717, 1061, 1317, 1509, 1514
MaeII ACGT 1 cut(s) 1015
MalI GATC 7 cut(s) 15, 133, 140, 338, 356, 368, 791
MboI GATC 7 cut(s) 13, 131, 138, 336, 354, 366, 789
MflI RGATCY 2 cut(s) 131, 138
MhlI GDGCHC 1 cut(s) 315
MlsI TGGCCA 2 cut(s) 554, 1453
MluCI AATT 6 cut(s) 760, 963, 1000, 1102, 1113, 1150
MluNI TGGCCA 2 cut(s) 554, 1453
MlyI GAGTC 5 cut(s) 179, 212, 248, 599, 1241
MmeI TCCRAC 2 cut(s) 285, 1246
Mox20I TGGCCA 2 cut(s) 554, 1453
MroNI GCCGGC 1 cut(s) 642
MroXI GAANNNNTTC 1 cut(s) 489
MscI TGGCCA 2 cut(s) 554, 1453
MseI TTAA 3 cut(s) 927, 1362, 1561
Msp20I TGGCCA 2 cut(s) 554, 1453
MspA1I CMGCKG 2 cut(s) 162, 841
MspI CCGG 9 cut(s) 129, 151, 189, 457, 643, 704, 941, 971, 1491
MspR9I CCNGG 6 cut(s) 129, 152, 556, 941, 971, 1520
MvaI CCWGG 2 cut(s) 556, 1520
MvnI CGCG 4 cut(s) 162, 287, 414, 453
MwoI GCNNNNNNNGC 4 cut(s) 310, 443, 835, 1393
NaeI GCCGGC 1 cut(s) 644
NciI CCSGG 4 cut(s) 129, 152, 941, 971
NdeII GATC 7 cut(s) 13, 131, 138, 336, 354, 366, 789
NgoMIV GCCGGC 1 cut(s) 642
NlaIII CATG 2 cut(s) 521, 1172
NlaIV GGNNCC 5 cut(s) 63, 97, 133, 268, 1395
PagI TCATGA 1 cut(s) 517
PalAI GGCGCGCC 1 cut(s) 412
PaqCI CACCTGC 1 cut(s) 1172
PauI GCGCGC 1 cut(s) 412
PciSI GCTCTTC 1 cut(s) 828
PcsI WCGNNNNNNNCGW 4 cut(s) 153, 315, 375, 1021
PdiI GCCGGC 1 cut(s) 644
PdmI GAANNNNTTC 1 cut(s) 489
PfeI GAWTC 7 cut(s) 144, 224, 403, 448, 514, 752, 953
PfoI TCCNGGA 2 cut(s) 939, 1518
PleI GAGTC 5 cut(s) 179, 212, 248, 598, 1240
PpsI GAGTC 5 cut(s) 179, 212, 248, 598, 1240
Psp124BI GAGCTC 1 cut(s) 315
Psp6I CCWGG 2 cut(s) 554, 1518
PspGI CCWGG 2 cut(s) 554, 1518
PspN4I GGNNCC 5 cut(s) 63, 97, 133, 268, 1395
PspPI GGNCC 4 cut(s) 95, 241, 968, 1118
PsrI GAACNNNNNNTAC 2 cut(s) 1291, 1323
PsuI RGATCY 2 cut(s) 131, 138
PteI GCGCGC 1 cut(s) 412
PvuII CAGCTG 1 cut(s) 841
RigI GGCCGGCC 1 cut(s) 646
RsaI GTAC 2 cut(s) 122, 347
RsaNI GTAC 2 cut(s) 121, 346
SacI GAGCTC 1 cut(s) 315
SacII CCGCGG 1 cut(s) 163
SapI GCTCTTC 1 cut(s) 828
SaqAI TTAA 3 cut(s) 927, 1362, 1561
Sau3AI GATC 7 cut(s) 13, 131, 138, 336, 354, 366, 789
Sau96I GGNCC 4 cut(s) 95, 241, 968, 1118
SchI GAGTC 5 cut(s) 179, 212, 248, 599, 1241
ScrFI CCNGG 6 cut(s) 129, 152, 556, 941, 971, 1520
SduI GDGCHC 1 cut(s) 315
SfaNI GCATC 2 cut(s) 201, 976
Sfr303I CCGCGG 1 cut(s) 163
SgrBI CCGCGG 1 cut(s) 163
SgsI GGCGCGCC 1 cut(s) 412
SinI GGWCC 2 cut(s) 241, 1118
Sse9I AATT 6 cut(s) 760, 963, 1000, 1102, 1113, 1150
SspMI CTAG 6 cut(s) 116, 717, 1061, 1317, 1509, 1514
SstI GAGCTC 1 cut(s) 315
StyD4I CCNGG 6 cut(s) 127, 150, 554, 939, 969, 1518
TaaI ACNGT 2 cut(s) 661, 1259
TaiI ACGT 1 cut(s) 1018
TaqI TCGA 7 cut(s) 216, 252, 309, 353, 369, 609, 792
TasI AATT 6 cut(s) 760, 963, 1000, 1102, 1113, 1150
TatI WGTACW 1 cut(s) 345
TauI GCSGC 6 cut(s) 165, 419, 440, 443, 446, 456
TfiI GAWTC 7 cut(s) 144, 224, 403, 448, 514, 752, 953
Tru1I TTAA 3 cut(s) 927, 1362, 1561
Tru9I TTAA 3 cut(s) 927, 1362, 1561
TscAI CASTG 2 cut(s) 643, 772
TseI GCWGC 4 cut(s) 722, 838, 1178, 1247
TspDTI ATGAA 3 cut(s) 1026, 1185, 1254
TspGWI ACGGA 2 cut(s) 279, 349
TspRI CASTG 2 cut(s) 643, 772
VpaK11BI GGWCC 2 cut(s) 241, 1118
XapI RAATTY 3 cut(s) 1000, 1102, 1150
XbaI TCTAGA 1 cut(s) 716
XmnI GAANNNNTTC 1 cut(s) 489
XspI CTAG 6 cut(s) 116, 717, 1061, 1317, 1509, 1514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.