AT4G15940

Acylpyruvase FAHD1, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0002365
Physical Location & Seq
Forward (+)
9038193 .. 9040370
2178 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G15940.1

Sequence Viewer

Length: 669 bp
ATGGCGACGTCGATGATACAGAGGATGTTCAAGCAAGGGACGAAGATCGTCTGCGTCGGCCGTAACTACGCCGCTCACGCCAAAGAACTAGGCAACGCCGTCCCCAAGGAACCAGTTATATTCTTGAAGCCAACATCATCATACTTAGAAAATGGAGGAACAATTGAGATCCCACATCCTTTGGATTCACTTCACCATGAAGTAGAACTCGCTTTAGTGATTGGACAGAAAGCTAGAGATGTACCTGAATCAATAGCCATGGATTACATTGGAGGATATGCGGTTGCTCTTGATATGACTGCTAGGGAACTCCAAGCTTCTGCTAAGGCATCTGGTCTCCCATGGACGGTTGCGAAAGGACAAGATACCTTCACTCCTATCAGCTCTGTTCTGCCAAAGGCGATGGTGCGTGATCCCGATAATCTAGAACTTTGGCTCAAGGTTGATGGTGAAACAAGACAGAAGGGTTTGACCAAAGATATGATATTCAAGGTCCCCTACCTCATTAGCTACATAAGTTCTATAATGACCCTTTACGGAGATGTCATCTTGACAGGCACACCAGAAGGTGTTGGACCTGTAAAGATAGGTCAGAAGATAACGGCCGGAATCACCGGTCTATCTGAAGTTCAATTCGATGTGGAGAGGCGTGTAAAGCCCTTGAGCTAA

Protein Analysis

222

Amino Acids

24.15

Weight (kDa)

6.91

Isoelectric Point (pI)

25.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAA_hydrolase PF01557 15 - 214 7.3e-61 Fumarylacetoacetate (FAA) hydrolase C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 11
AccBSI CCGCTC 1 cut(s) 74
AciI CCGC 2 cut(s) 72, 281
AclWI GGATC 2 cut(s) 163, 407
AcoI YGGCCR 2 cut(s) 58, 603
AcuI CTGAAG 1 cut(s) 645
AcyI GRCGYC 1 cut(s) 8
AfaI GTAC 1 cut(s) 243
AfiI CCNNNNNNNGG 1 cut(s) 346
AgeI ACCGGT 1 cut(s) 614
AgsI TTSAA 4 cut(s) 31, 127, 490, 632
AluBI AGCT 5 cut(s) 233, 317, 384, 510, 666
AluI AGCT 5 cut(s) 233, 317, 384, 510, 666
Alw26I GTCTC 1 cut(s) 341
AlwI GGATC 2 cut(s) 163, 407
AoxI GGCC 2 cut(s) 58, 603
AsiGI ACCGGT 1 cut(s) 614
AspS9I GGNCC 2 cut(s) 493, 575
AsuHPI GGTGA 3 cut(s) 185, 461, 604
AvaII GGWCC 2 cut(s) 493, 575
BccI CCATC 2 cut(s) 397, 440
BceAI ACGGC 3 cut(s) 45, 83, 618
BcoDI GTCTC 1 cut(s) 341
BfaI CTAG 4 cut(s) 89, 234, 303, 425
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
Bme18I GGWCC 2 cut(s) 493, 575
BmgT120I GGNCC 2 cut(s) 493, 575
BmiI GGNNCC 2 cut(s) 111, 495
BmsI GCATC 1 cut(s) 338
Bpu10I CCTNAGC 1 cut(s) 324
BpuEI CTTGAG 1 cut(s) 422
BsaHI GRCGYC 1 cut(s) 8
BsaI GGTCTC 1 cut(s) 341
BsaJI CCNNGG 3 cut(s) 105, 258, 341
BsaWI WCCGGW 1 cut(s) 614
BsaXI ACNNNNNCTCC 2 cut(s) 358, 388
Bsc4I CCNNNNNNNGG 1 cut(s) 346
Bse118I RCCGGY 1 cut(s) 614
Bse1I ACTGG 1 cut(s) 113
BseDI CCNNGG 3 cut(s) 105, 258, 341
BseGI GGATG 2 cut(s) 30, 175
BseLI CCNNNNNNNGG 1 cut(s) 346
BseNI ACTGG 1 cut(s) 113
BseX3I CGGCCG 2 cut(s) 58, 603
Bsh1285I CGRYCG 2 cut(s) 61, 606
BshFI GGCC 2 cut(s) 60, 605
BshTI ACCGGT 1 cut(s) 614
BsiEI CGRYCG 2 cut(s) 61, 606
BsiSI CCGG 2 cut(s) 606, 615
BslFI GGGAC 3 cut(s) 52, 86, 479
BslI CCNNNNNNNGG 1 cut(s) 346
BsmAI GTCTC 1 cut(s) 341
BsmFI GGGAC 3 cut(s) 52, 86, 479
BsnI GGCC 2 cut(s) 60, 605
Bso31I GGTCTC 1 cut(s) 341
Bsp143I GATC 3 cut(s) 45, 168, 412
Bsp19I CCATGG 2 cut(s) 258, 341
BspACI CCGC 2 cut(s) 72, 281
BspANI GGCC 2 cut(s) 60, 605
BspLI GGNNCC 2 cut(s) 111, 495
BspPI GGATC 2 cut(s) 163, 407
BspTNI GGTCTC 1 cut(s) 341
BsrBI CCGCTC 1 cut(s) 74
BsrFI RCCGGY 1 cut(s) 614
BsrI ACTGG 1 cut(s) 113
BssAI RCCGGY 1 cut(s) 614
BssECI CCNNGG 3 cut(s) 105, 258, 341
BssMI GATC 3 cut(s) 45, 168, 412
BssNI GRCGYC 1 cut(s) 8
BssT1I CCWWGG 3 cut(s) 105, 258, 341
Bst4CI ACNGT 1 cut(s) 349
BstACI GRCGYC 1 cut(s) 8
BstDEI CTNAG 2 cut(s) 145, 324
BstDSI CCRYGG 2 cut(s) 258, 341
BstF5I GGATG 2 cut(s) 30, 175
BstKTI GATC 3 cut(s) 48, 171, 415
BstMAI GTCTC 1 cut(s) 341
BstMBI GATC 3 cut(s) 45, 168, 412
BstMCI CGRYCG 2 cut(s) 61, 606
BstMWI GCNNNNNNNGC 2 cut(s) 77, 655
BstX2I RGATCY 1 cut(s) 168
BstYI RGATCY 1 cut(s) 168
BstZI CGGCCG 2 cut(s) 58, 603
BsuRI GGCC 2 cut(s) 60, 605
BtgI CCRYGG 2 cut(s) 258, 341
BtgZI GCGATG 1 cut(s) 416
BtsCI GGATG 2 cut(s) 30, 175
Cfr10I RCCGGY 1 cut(s) 614
Cfr13I GGNCC 2 cut(s) 493, 575
CseI GACGC 1 cut(s) 43
Csp6I GTAC 1 cut(s) 242
CspAI ACCGGT 1 cut(s) 614
CspCI CAANNNNNGTGG 2 cut(s) 162, 197
CviAII CATG 3 cut(s) 197, 259, 342
CviQI GTAC 1 cut(s) 242
DdeI CTNAG 2 cut(s) 145, 324
DpnI GATC 3 cut(s) 47, 170, 414
DpnII GATC 3 cut(s) 45, 168, 412
EaeI YGGCCR 2 cut(s) 58, 603
EagI CGGCCG 2 cut(s) 58, 603
EclXI CGGCCG 2 cut(s) 58, 603
Eco130I CCWWGG 3 cut(s) 105, 258, 341
Eco31I GGTCTC 1 cut(s) 341
Eco47I GGWCC 2 cut(s) 493, 575
Eco52I CGGCCG 2 cut(s) 58, 603
Eco57I CTGAAG 1 cut(s) 645
EcoO109I RGGNCCY 1 cut(s) 493
EcoT14I CCWWGG 3 cut(s) 105, 258, 341
ErhI CCWWGG 3 cut(s) 105, 258, 341
FaeI CATG 3 cut(s) 200, 262, 345
FaqI GGGAC 3 cut(s) 52, 86, 479
FatI CATG 3 cut(s) 196, 258, 341
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 2 cut(s) 37, 162
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 4 cut(s) 89, 234, 303, 425
GluI GCNGC 1 cut(s) 72
HaeIII GGCC 2 cut(s) 60, 605
HapII CCGG 2 cut(s) 606, 615
HgaI GACGC 1 cut(s) 43
Hin1I GRCGYC 1 cut(s) 8
Hin1II CATG 3 cut(s) 200, 262, 345
HindIII AAGCTT 1 cut(s) 315
HinfI GANTC 3 cut(s) 185, 248, 609
HpaII CCGG 2 cut(s) 606, 615
HphI GGTGA 3 cut(s) 185, 461, 604
Hpy188I TCNGA 2 cut(s) 594, 625
Hpy188III TCNNGA 5 cut(s) 124, 290, 416, 425, 550
Hpy99I CGWCG 3 cut(s) 10, 13, 59
HpyAV CCTTC 3 cut(s) 379, 457, 560
HpyCH4III ACNGT 1 cut(s) 349
HpyCH4IV ACGT 1 cut(s) 8
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 655
HpyF3I CTNAG 2 cut(s) 145, 324
HpySE526I ACGT 1 cut(s) 8
Hsp92I GRCGYC 1 cut(s) 8
Hsp92II CATG 3 cut(s) 200, 262, 345
Kzo9I GATC 3 cut(s) 45, 168, 412
LpnPI CCDG 8 cut(s) 126, 258, 318, 540, 576, 591, 619, 628
LweI GCATC 1 cut(s) 338
MaeI CTAG 4 cut(s) 89, 234, 303, 425
MaeII ACGT 1 cut(s) 8
MaeIII GTNAC 1 cut(s) 62
MalI GATC 3 cut(s) 47, 170, 414
MbiI CCGCTC 1 cut(s) 74
MboI GATC 3 cut(s) 45, 168, 412
MboII GAAGA 2 cut(s) 55, 607
MfeI CAATTG 1 cut(s) 162
MflI RGATCY 1 cut(s) 168
MluCI AATT 2 cut(s) 162, 632
MmeI TCCRAC 1 cut(s) 553
MnlI CCTC 5 cut(s) 15, 149, 266, 512, 639
MspI CCGG 2 cut(s) 606, 615
MunI CAATTG 1 cut(s) 162
MwoI GCNNNNNNNGC 2 cut(s) 77, 655
NcoI CCATGG 2 cut(s) 258, 341
NdeII GATC 3 cut(s) 45, 168, 412
NlaIII CATG 3 cut(s) 200, 262, 345
NlaIV GGNNCC 2 cut(s) 111, 495
PfeI GAWTC 3 cut(s) 185, 248, 609
PinAI ACCGGT 1 cut(s) 614
PkrI GCNGC 1 cut(s) 73
PpuMI RGGWCCY 1 cut(s) 493
Psp5II RGGWCCY 1 cut(s) 493
PspN4I GGNNCC 2 cut(s) 111, 495
PspPI GGNCC 2 cut(s) 493, 575
PspPPI RGGWCCY 1 cut(s) 493
PsuI RGATCY 1 cut(s) 168
RsaI GTAC 1 cut(s) 243
RsaNI GTAC 1 cut(s) 242
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 3 cut(s) 45, 168, 412
Sau96I GGNCC 2 cut(s) 493, 575
SfaNI GCATC 1 cut(s) 338
SinI GGWCC 2 cut(s) 493, 575
SmlI CTYRAG 2 cut(s) 437, 661
SmoI CTYRAG 2 cut(s) 437, 661
Sse9I AATT 2 cut(s) 162, 632
SsiI CCGC 2 cut(s) 72, 281
SspMI CTAG 4 cut(s) 89, 234, 303, 425
StyI CCWWGG 3 cut(s) 105, 258, 341
TaaI ACNGT 1 cut(s) 349
TaiI ACGT 1 cut(s) 11
TaqI TCGA 2 cut(s) 11, 636
TasI AATT 2 cut(s) 162, 632
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 3 cut(s) 185, 248, 609
TspDTI ATGAA 1 cut(s) 213
TspGWI ACGGA 1 cut(s) 552
VpaK11BI GGWCC 2 cut(s) 493, 575
XbaI TCTAGA 1 cut(s) 424
XspI CTAG 4 cut(s) 89, 234, 303, 425
ZraI GACGTC 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.