Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002365

Physical Location & Seq

Genomic Coordinates Reverse (-)

9861459 .. 9865293

Gene Structure 3835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G125100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGCTACGGCGGCGTTAGAGAAGCTTCTGCAAGTAGGCACTAAGATCGTCGGAGTTGGCAGAAACTATGCCGCTCACGCCAAGGAACTCGGGAACGCCGTCCCCAAGGAGCCTGTGCTTTTTCTCAAACCGACGTCGTCTTATTTGGAAAACGGAGGCACAATCGAGGTCCCTCCCCCTCTGTTGTCGTTGGACCATGAGGTGGAGCTGGCCGTCGTCATCTCTAAGAAAGCTCGCGATGTTTCGCAGGCCACTGCCATGGACTACGTTGCCGGTTATGCACTTGCTCTTGATATGACTGCCAGAGAAATTCAAGCTTCTGCTAAGTCTGCAGGTCTTCCATGGACCATAGCTAAGGGGCAGGACACCTTCACACCAATCAGTTCCTTGTTACCCAAGGAAATGGTGCCAGACCCGGACAATATAGAGTTGTGGCTGAAGGTAGATGGAGAATTGAGGCAGAAAGGCTCAACCAAGGATATGATATTTAAGCTCCCATTTCTCATCAGCCACATAAGCTCCATTATGACACTTCTTGAAGGAGATGTAATACTAACAGGCACTCCCAAAGGTGTTGGCCCAGTTAAAGTAGGTCAAAAGATAACTGCTGGCATAACGAACCTCCTGGACGTTGAATTCAATGTTGAAAAAAGGCAGAAGCAAGGAAGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016787 GO:0016822 GO:0016823 GO:0018773 GO:0034545 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914

KEGG Pathways

Metabolic & Signaling

ko00350 ko01100 ko01120 map00350 map01100 map01120

Pfam Domains

Protein Families

FAA_hydrolase

Protein Analysis

225

Amino Acids

24.02

Weight (kDa)

6.32

Isoelectric Point (pI)

31.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16700 AT3G16700 AT3G16700 AT3G16700 AT4G15940
fragaria_vesca	FvH4_4g18580 FvH4_4g18580
malus_domestica	MD04G1020300.v1.1
prunus_persica	Prupe.1G124800_v2.0.a1 Prupe.1G125100_v2.0.a1
pyrus_communis	pycom10g01710 pycom10g01730 pycom16g13990
rosa_chinensis	RchiOBHm_Chr0c32g0501491 RchiOBHm_Chr4g0423181 RchiOBHm_Chr4g0423191
rosa_laevigata	RLG00000007578 RLG00000033195
rosa_multiflora	Rmu_sc0000580.1_g000006 Rmu_sc0003368.1_g000036 Rmu_sc0007269.1_g000013 Rmu_sc0007782.1_g000002 Rmu_sc0008829.1_g000004
rosa_roxburghii	Rroxscaffold_5G00365340 Rroxscaffold_5G00365370
rosa_rugosa	Rorug02G0398700 Rorug04G0185000 Rorug04G0185100
rosa_samantha	Rh2AG299600 Rh4AG244500 Rh4AG247800 Rh4BG249700 Rh4CG258800 Rh4DG244500 Rh5AG208600 Rh5AG217600 Rh5AG294800 Rh5BG129400 Rh5BG217400 Rh5DG211400 Rh6AG307700
rosa_wichuraiana	Rw4G021060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	137
Acc36I	ACCTGC	1 cut(s)	323
AccB1I	GGYRCC	1 cut(s)	406
AccB7I	CCANNNNNTGG	1 cut(s)	202
AccBSI	CCGCTC	1 cut(s)	74
AccII	CGCG	1 cut(s)	237
AciI	CCGC	2 cut(s)	11, 72
AcoI	YGGCCR	1 cut(s)	210
AcsI	RAATTY	2 cut(s)	309, 635
AcuI	CTGAAG	1 cut(s)	458
AcyI	GRCGYC	1 cut(s)	134
AfiI	CCNNNNNNNGG	1 cut(s)	202
AgsI	TTSAA	5 cut(s)	314, 539, 635, 640, 647
AjnI	CCWGG	1 cut(s)	624
AluBI	AGCT	8 cut(s)	25, 208, 233, 317, 353, 493, 519, 669
AluI	AGCT	8 cut(s)	25, 208, 233, 317, 353, 493, 519, 669
Ama87I	CYCGRG	1 cut(s)	89
AoxI	GGCC	3 cut(s)	210, 249, 577
ApoI	RAATTY	2 cut(s)	309, 635
AspS9I	GGNCC	4 cut(s)	169, 193, 345, 578
AsuC2I	CCSGG	1 cut(s)	416
AvaI	CYCGRG	1 cut(s)	89
AvaII	GGWCC	3 cut(s)	169, 193, 345
BanI	GGYRCC	1 cut(s)	406
BbsI	GAAGAC	1 cut(s)	329
BccI	CCATC	1 cut(s)	440
BceAI	ACGGC	3 cut(s)	24, 83, 197
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BciT130I	CCWGG	1 cut(s)	626
BcnI	CCSGG	1 cut(s)	416
BfmI	CTRYAG	1 cut(s)	330
BfuAI	ACCTGC	1 cut(s)	323
BisI	GCNGC	2 cut(s)	12, 72
BlsI	GCNGC	2 cut(s)	13, 73
Bme1390I	CCNGG	2 cut(s)	416, 626
Bme18I	GGWCC	3 cut(s)	169, 193, 345
BmeT110I	CYCGRG	1 cut(s)	89
BmgT120I	GGNCC	4 cut(s)	169, 193, 345, 578
BmiI	GGNNCC	3 cut(s)	111, 171, 408
BmrFI	CCNGG	2 cut(s)	416, 626
BmrI	ACTGGG	1 cut(s)	575
BmuI	ACTGGG	1 cut(s)	575
BpiI	GAAGAC	1 cut(s)	329
Bpu10I	CCTNAGC	1 cut(s)	354
BpuMI	CCSGG	1 cut(s)	416
BsaHI	GRCGYC	1 cut(s)	134
BsaJI	CCNNGG	6 cut(s)	81, 105, 258, 341, 396, 474
BsaXI	ACNNNNNCTCC	4 cut(s)	503, 533, 547, 577
Bsc4I	CCNNNNNNNGG	1 cut(s)	202
Bse118I	RCCGGY	1 cut(s)	272
Bse1I	ACTGG	1 cut(s)	581
BseBI	CCWGG	1 cut(s)	626
BseDI	CCNNGG	6 cut(s)	81, 105, 258, 341, 396, 474
BseLI	CCNNNNNNNGG	1 cut(s)	202
BseNI	ACTGG	1 cut(s)	581
Bsh1236I	CGCG	1 cut(s)	237
BshFI	GGCC	3 cut(s)	212, 251, 579
BshNI	GGYRCC	1 cut(s)	406
BsiHKCI	CYCGRG	1 cut(s)	89
BsiSI	CCGG	2 cut(s)	273, 416
BslFI	GGGAC	2 cut(s)	86, 155
BslI	CCNNNNNNNGG	1 cut(s)	202
BsmFI	GGGAC	2 cut(s)	86, 155
BsnI	GGCC	3 cut(s)	212, 251, 579
BsoBI	CYCGRG	1 cut(s)	89
Bsp143I	GATC	1 cut(s)	45
Bsp19I	CCATGG	2 cut(s)	258, 341
Bsp68I	TCGCGA	1 cut(s)	237
BspACI	CCGC	2 cut(s)	11, 72
BspANI	GGCC	3 cut(s)	212, 251, 579
BspFNI	CGCG	1 cut(s)	237
BspLI	GGNNCC	3 cut(s)	111, 171, 408
BspMAI	CTGCAG	1 cut(s)	334
BspMI	ACCTGC	1 cut(s)	323
BspT107I	GGYRCC	1 cut(s)	406
BsrBI	CCGCTC	1 cut(s)	74
BsrFI	RCCGGY	1 cut(s)	272
BsrI	ACTGG	1 cut(s)	581
BssAI	RCCGGY	1 cut(s)	272
BssECI	CCNNGG	6 cut(s)	81, 105, 258, 341, 396, 474
BssMI	GATC	1 cut(s)	45
BssNI	GRCGYC	1 cut(s)	134
BssT1I	CCWWGG	6 cut(s)	81, 105, 258, 341, 396, 474
Bst2UI	CCWGG	1 cut(s)	626
BstACI	GRCGYC	1 cut(s)	134
BstC8I	GCNNGC	4 cut(s)	210, 235, 249, 610
BstDEI	CTNAG	4 cut(s)	42, 225, 324, 354
BstDSI	CCRYGG	2 cut(s)	258, 341
BstFNI	CGCG	1 cut(s)	237
BstKTI	GATC	1 cut(s)	48
BstMBI	GATC	1 cut(s)	45
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 77, 278, 329, 516
BstNI	CCWGG	1 cut(s)	626
BstSCI	CCNGG	2 cut(s)	414, 624
BstSFI	CTRYAG	1 cut(s)	330
BstUI	CGCG	1 cut(s)	237
BstV2I	GAAGAC	1 cut(s)	329
BstXI	CCANNNNNNTGG	2 cut(s)	259, 403
BsuRI	GGCC	3 cut(s)	212, 251, 579
BtgI	CCRYGG	2 cut(s)	258, 341
BtgZI	GCGATG	1 cut(s)	252
BtsI	GCAGTG	1 cut(s)	252
BtsIMutI	CAGTG	1 cut(s)	252
BtuMI	TCGCGA	1 cut(s)	237
BveI	ACCTGC	1 cut(s)	323
Cac8I	GCNNGC	4 cut(s)	210, 235, 249, 610
Cfr10I	RCCGGY	1 cut(s)	272
Cfr13I	GGNCC	4 cut(s)	169, 193, 345, 578
CviAII	CATG	3 cut(s)	197, 259, 342
DdeI	CTNAG	4 cut(s)	42, 225, 324, 354
DpnI	GATC	1 cut(s)	47
DpnII	GATC	1 cut(s)	45
EaeI	YGGCCR	1 cut(s)	210
Eco130I	CCWWGG	6 cut(s)	81, 105, 258, 341, 396, 474
Eco47I	GGWCC	3 cut(s)	169, 193, 345
Eco57I	CTGAAG	1 cut(s)	458
Eco88I	CYCGRG	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	169
EcoRI	GAATTC	1 cut(s)	635
EcoRII	CCWGG	1 cut(s)	624
EcoT14I	CCWWGG	6 cut(s)	81, 105, 258, 341, 396, 474
ErhI	CCWWGG	6 cut(s)	81, 105, 258, 341, 396, 474
FaeI	CATG	3 cut(s)	200, 262, 345
FaqI	GGGAC	2 cut(s)	86, 155
FatI	CATG	3 cut(s)	196, 258, 341
Fnu4HI	GCNGC	2 cut(s)	12, 72
Fsp4HI	GCNGC	2 cut(s)	12, 72
GluI	GCNGC	2 cut(s)	12, 72
HaeIII	GGCC	3 cut(s)	212, 251, 579
HapII	CCGG	2 cut(s)	273, 416
Hin1I	GRCGYC	1 cut(s)	134
Hin1II	CATG	3 cut(s)	200, 262, 345
HindIII	AAGCTT	2 cut(s)	23, 315
HpaII	CCGG	2 cut(s)	273, 416
Hpy188I	TCNGA	1 cut(s)	53
Hpy188III	TCNNGA	5 cut(s)	91, 236, 290, 536, 672
Hpy99I	CGWCG	4 cut(s)	53, 136, 139, 218
HpyAV	CCTTC	3 cut(s)	379, 433, 533
HpyCH4IV	ACGT	3 cut(s)	134, 267, 630
HpyCH4V	TGCA	3 cut(s)	31, 281, 332
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 77, 278, 329, 516
HpyF3I	CTNAG	4 cut(s)	42, 225, 324, 354
HpySE526I	ACGT	3 cut(s)	134, 267, 630
Hsp92I	GRCGYC	1 cut(s)	134
Hsp92II	CATG	3 cut(s)	200, 262, 345
Kzo9I	GATC	1 cut(s)	45
LmnI	GCTCC	4 cut(s)	109, 205, 498, 524
MaeII	ACGT	3 cut(s)	134, 267, 630
MaeIII	GTNAC	1 cut(s)	390
MalI	GATC	1 cut(s)	47
MbiI	CCGCTC	1 cut(s)	74
MboI	GATC	1 cut(s)	45
MboII	GAAGA	1 cut(s)	329
MluCI	AATT	3 cut(s)	309, 452, 635
MmeI	TCCRAC	2 cut(s)	31, 171
MnlI	CCTC	7 cut(s)	149, 160, 183, 189, 193, 450, 632
MseI	TTAA	2 cut(s)	489, 585
MslI	CAYNNNNRTG	1 cut(s)	257
MspI	CCGG	2 cut(s)	273, 416
MspR9I	CCNGG	2 cut(s)	416, 626
MvaI	CCWGG	1 cut(s)	626
MvnI	CGCG	1 cut(s)	237
MwoI	GCNNNNNNNGC	5 cut(s)	11, 77, 278, 329, 516
NciI	CCSGG	1 cut(s)	416
NcoI	CCATGG	2 cut(s)	258, 341
NdeII	GATC	1 cut(s)	45
NlaIII	CATG	3 cut(s)	200, 262, 345
NlaIV	GGNNCC	3 cut(s)	111, 171, 408
NruI	TCGCGA	1 cut(s)	237
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PflFI	GACNNNGTC	1 cut(s)	136
PflMI	CCANNNNNTGG	1 cut(s)	202
PfoI	TCCNGGA	1 cut(s)	624
PkrI	GCNGC	2 cut(s)	13, 73
PpuMI	RGGWCCY	1 cut(s)	169
Psp5II	RGGWCCY	1 cut(s)	169
Psp6I	CCWGG	1 cut(s)	624
PspGI	CCWGG	1 cut(s)	624
PspN4I	GGNNCC	3 cut(s)	111, 171, 408
PspPI	GGNCC	4 cut(s)	169, 193, 345, 578
PspPPI	RGGWCCY	1 cut(s)	169
PstI	CTGCAG	1 cut(s)	334
PsyI	GACNNNGTC	1 cut(s)	136
RruI	TCGCGA	1 cut(s)	237
RseI	CAYNNNNRTG	1 cut(s)	257
SaqAI	TTAA	2 cut(s)	489, 585
SatI	GCNGC	2 cut(s)	12, 72
Sau3AI	GATC	1 cut(s)	45
Sau96I	GGNCC	4 cut(s)	169, 193, 345, 578
ScrFI	CCNGG	2 cut(s)	416, 626
SfcI	CTRYAG	1 cut(s)	330
SinI	GGWCC	3 cut(s)	169, 193, 345
SmiMI	CAYNNNNRTG	1 cut(s)	257
Sse9I	AATT	3 cut(s)	309, 452, 635
SsiI	CCGC	2 cut(s)	11, 72
StyD4I	CCNGG	2 cut(s)	414, 624
StyI	CCWWGG	6 cut(s)	81, 105, 258, 341, 396, 474
TaiI	ACGT	3 cut(s)	137, 270, 633
TaqI	TCGA	1 cut(s)	165
TasI	AATT	3 cut(s)	309, 452, 635
TauI	GCSGC	2 cut(s)	14, 74
Tru1I	TTAA	2 cut(s)	489, 585
Tru9I	TTAA	2 cut(s)	489, 585
TscAI	CASTG	1 cut(s)	259
TspGWI	ACGGA	1 cut(s)	168
TspRI	CASTG	1 cut(s)	259
Tth111I	GACNNNGTC	1 cut(s)	136
Van91I	CCANNNNNTGG	1 cut(s)	202
VpaK11BI	GGWCC	3 cut(s)	169, 193, 345
XapI	RAATTY	2 cut(s)	309, 635
ZraI	GACGTC	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.