Rw4G021060

Acylpyruvase FAHD1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0002365
Physical Location & Seq
Forward (+)
45466326 .. 45468607
2282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G021060.1

Sequence Viewer

Length: 660 bp
ATGGCAAGCAGGCTTTTACAAGTAGGCACTAAGATCATCGGAGTCGGCAGAAACTACGCCGCCCACGCCAAAGAGCTGGGCAACGCCGTCCCCAAGGAGCCTGTGCTTTTCCTCAAACCGACGTCGTCTTACTTGGAAAACGGAGGCACGATCGAAATCCCTCACCCTCTGCAGTCATTGGACTATGAGGTGGAGCTGGCCGTCATCATATCCAAGAAAGCTCGCGATGTTCCCCAGGCCAAGGCCATGGATTACGTTGGTGGTTATGCACTTGCTCTTGATATGACTGCCAGAGAGATTCAAGCTACTGCTAAGTCTGCAGGTCTTCCATGGACCATAGCAAAAGGGCAGGACACCTTCACACCAATCAGTTCTGTGTTGTCCCTAGCAATGGTGCCAGACCCTGACGATTTGGAACTTTGGTTGAAGGTAGATGGAGAAGTGAGGCAAAAAGGTTCAACCAAGGATATGATATTTAAAATCCCATTTCTCATTAGCCACATAAGTTCCATTATGACACTTCTGGAAGGAGATGTAATACTAACAGGTACTCCCAAAGGTGTTGGTCCAGTAAAAGCAGGCCAAAAGATAACCGCGGGAATAACAAACCTTGTGGATGTACAATTCAATGTTGACAAACGGAGGCAAGGAAGTTCTTGA

Protein Analysis

219

Amino Acids

23.54

Weight (kDa)

7.87

Isoelectric Point (pI)

29.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAA_hydrolase PF01557 11 - 211 3.1e-64 Fumarylacetoacetate (FAA) hydrolase C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 125
Acc36I ACCTGC 1 cut(s) 311
AccB1I GGYRCC 1 cut(s) 394
AccII CGCG 2 cut(s) 225, 596
AciI CCGC 3 cut(s) 60, 594, 596
AcoI YGGCCR 1 cut(s) 198
AcyI GRCGYC 1 cut(s) 122
AfaI GTAC 2 cut(s) 550, 621
AfiI CCNNNNNNNGG 2 cut(s) 241, 391
AgsI TTSAA 4 cut(s) 302, 427, 459, 628
AjnI CCWGG 1 cut(s) 234
AluBI AGCT 4 cut(s) 76, 196, 221, 305
AluI AGCT 4 cut(s) 76, 196, 221, 305
AlwNI CAGNNNCTG 1 cut(s) 404
AoxI GGCC 4 cut(s) 198, 237, 243, 580
AspS9I GGNCC 2 cut(s) 333, 566
AsuHPI GGTGA 1 cut(s) 155
AvaII GGWCC 2 cut(s) 333, 566
BanI GGYRCC 1 cut(s) 394
BbsI GAAGAC 1 cut(s) 317
BccI CCATC 1 cut(s) 428
BceAI ACGGC 2 cut(s) 71, 185
BciT130I CCWGG 1 cut(s) 236
BfaI CTAG 1 cut(s) 386
BfmI CTRYAG 2 cut(s) 170, 318
BfuAI ACCTGC 1 cut(s) 311
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
Bme1390I CCNGG 1 cut(s) 236
Bme18I GGWCC 2 cut(s) 333, 566
BmgT120I GGNCC 2 cut(s) 333, 566
BmiI GGNNCC 2 cut(s) 99, 396
BmrFI CCNGG 1 cut(s) 236
BpiI GAAGAC 1 cut(s) 317
BsaBI GATNNNNATC 1 cut(s) 155
BsaHI GRCGYC 1 cut(s) 122
BsaJI CCNNGG 7 cut(s) 93, 234, 240, 246, 329, 462, 594
BsaXI ACNNNNNCTCC 2 cut(s) 535, 565
Bsc4I CCNNNNNNNGG 2 cut(s) 241, 391
Bse1I ACTGG 1 cut(s) 569
Bse3DI GCAATG 1 cut(s) 396
Bse8I GATNNNNATC 1 cut(s) 155
BseBI CCWGG 1 cut(s) 236
BseDI CCNNGG 7 cut(s) 93, 234, 240, 246, 329, 462, 594
BseGI GGATG 1 cut(s) 622
BseJI GATNNNNATC 1 cut(s) 155
BseLI CCNNNNNNNGG 2 cut(s) 241, 391
BseMI GCAATG 1 cut(s) 396
BseNI ACTGG 1 cut(s) 569
BseYI CCCAGC 1 cut(s) 76
Bsh1236I CGCG 2 cut(s) 225, 596
Bsh1285I CGRYCG 1 cut(s) 153
BshFI GGCC 4 cut(s) 200, 239, 245, 582
BshNI GGYRCC 1 cut(s) 394
BsiEI CGRYCG 1 cut(s) 153
BslFI GGGAC 2 cut(s) 74, 367
BslI CCNNNNNNNGG 2 cut(s) 241, 391
BsmFI GGGAC 2 cut(s) 74, 367
BsnI GGCC 4 cut(s) 200, 239, 245, 582
Bsp1407I TGTACA 1 cut(s) 619
Bsp143I GATC 2 cut(s) 33, 150
Bsp19I CCATGG 2 cut(s) 246, 329
Bsp68I TCGCGA 1 cut(s) 225
BspACI CCGC 3 cut(s) 60, 594, 596
BspANI GGCC 4 cut(s) 200, 239, 245, 582
BspFNI CGCG 2 cut(s) 225, 596
BspLI GGNNCC 2 cut(s) 99, 396
BspMAI CTGCAG 2 cut(s) 174, 322
BspMI ACCTGC 1 cut(s) 311
BspT107I GGYRCC 1 cut(s) 394
BsrDI GCAATG 1 cut(s) 396
BsrGI TGTACA 1 cut(s) 619
BsrI ACTGG 1 cut(s) 569
BssECI CCNNGG 7 cut(s) 93, 234, 240, 246, 329, 462, 594
BssMI GATC 2 cut(s) 33, 150
BssNI GRCGYC 1 cut(s) 122
BssT1I CCWWGG 5 cut(s) 93, 240, 246, 329, 462
Bst2UI CCWGG 1 cut(s) 236
BstACI GRCGYC 1 cut(s) 122
BstAUI TGTACA 1 cut(s) 619
BstC8I GCNNGC 5 cut(s) 7, 11, 198, 223, 580
BstDEI CTNAG 2 cut(s) 30, 312
BstDSI CCRYGG 3 cut(s) 246, 329, 594
BstF5I GGATG 1 cut(s) 622
BstFNI CGCG 2 cut(s) 225, 596
BstKTI GATC 2 cut(s) 36, 153
BstMBI GATC 2 cut(s) 33, 150
BstMCI CGRYCG 1 cut(s) 153
BstMWI GCNNNNNNNGC 2 cut(s) 65, 317
BstNI CCWGG 1 cut(s) 236
BstSCI CCNGG 1 cut(s) 234
BstSFI CTRYAG 2 cut(s) 170, 318
BstUI CGCG 2 cut(s) 225, 596
BstV2I GAAGAC 1 cut(s) 317
BstXI CCANNNNNNTGG 2 cut(s) 76, 247
BsuRI GGCC 4 cut(s) 200, 239, 245, 582
BtgI CCRYGG 3 cut(s) 246, 329, 594
BtgZI GCGATG 1 cut(s) 240
BtsCI GGATG 1 cut(s) 622
BtuMI TCGCGA 1 cut(s) 225
BveI ACCTGC 1 cut(s) 311
Cac8I GCNNGC 5 cut(s) 7, 11, 198, 223, 580
CaiI CAGNNNCTG 1 cut(s) 404
Cfr13I GGNCC 2 cut(s) 333, 566
Cfr42I CCGCGG 1 cut(s) 597
Csp6I GTAC 2 cut(s) 549, 620
CspCI CAANNNNNGTGG 2 cut(s) 594, 629
CviAII CATG 2 cut(s) 247, 330
CviQI GTAC 2 cut(s) 549, 620
DdeI CTNAG 2 cut(s) 30, 312
DpnI GATC 2 cut(s) 35, 152
DpnII GATC 2 cut(s) 33, 150
DraI TTTAAA 1 cut(s) 478
EaeI YGGCCR 1 cut(s) 198
Eco130I CCWWGG 5 cut(s) 93, 240, 246, 329, 462
Eco47I GGWCC 2 cut(s) 333, 566
EcoRII CCWGG 1 cut(s) 234
EcoT14I CCWWGG 5 cut(s) 93, 240, 246, 329, 462
ErhI CCWWGG 5 cut(s) 93, 240, 246, 329, 462
FaeI CATG 2 cut(s) 250, 333
FaqI GGGAC 2 cut(s) 74, 367
FatI CATG 2 cut(s) 246, 329
FauI CCCGC 1 cut(s) 589
Fnu4HI GCNGC 1 cut(s) 60
FokI GGATG 1 cut(s) 629
Fsp4HI GCNGC 1 cut(s) 60
FspBI CTAG 1 cut(s) 386
GluI GCNGC 1 cut(s) 60
GsaI CCCAGC 1 cut(s) 80
HaeIII GGCC 4 cut(s) 200, 239, 245, 582
Hin1I GRCGYC 1 cut(s) 122
Hin1II CATG 2 cut(s) 250, 333
HincII GTYRAC 1 cut(s) 634
HindII GTYRAC 1 cut(s) 634
HinfI GANTC 2 cut(s) 42, 298
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 1 cut(s) 634
Hpy188I TCNGA 1 cut(s) 41
Hpy188III TCNNGA 4 cut(s) 224, 278, 524, 657
Hpy8I GTNNAC 1 cut(s) 634
Hpy99I CGWCG 2 cut(s) 124, 127
HpyAV CCTTC 3 cut(s) 367, 421, 521
HpyCH4IV ACGT 2 cut(s) 122, 255
HpyCH4V TGCA 3 cut(s) 172, 269, 320
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 317
HpyF3I CTNAG 2 cut(s) 30, 312
HpySE526I ACGT 2 cut(s) 122, 255
Hsp92I GRCGYC 1 cut(s) 122
Hsp92II CATG 2 cut(s) 250, 333
KspI CCGCGG 1 cut(s) 597
Kzo9I GATC 2 cut(s) 33, 150
LmnI GCTCC 2 cut(s) 97, 193
MaeI CTAG 1 cut(s) 386
MaeII ACGT 2 cut(s) 122, 255
MalI GATC 2 cut(s) 35, 152
MboI GATC 2 cut(s) 33, 150
MboII GAAGA 1 cut(s) 317
MluCI AATT 1 cut(s) 623
MlyI GAGTC 1 cut(s) 51
MnlI CCTC 7 cut(s) 122, 137, 171, 177, 181, 438, 636
MseI TTAA 1 cut(s) 477
MspA1I CMGCKG 1 cut(s) 596
MspR9I CCNGG 1 cut(s) 236
MvaI CCWGG 1 cut(s) 236
MvnI CGCG 2 cut(s) 225, 596
MwoI GCNNNNNNNGC 2 cut(s) 65, 317
NcoI CCATGG 2 cut(s) 246, 329
NdeII GATC 2 cut(s) 33, 150
NlaIII CATG 2 cut(s) 250, 333
NlaIV GGNNCC 2 cut(s) 99, 396
NruI TCGCGA 1 cut(s) 225
PfeI GAWTC 1 cut(s) 298
PflFI GACNNNGTC 1 cut(s) 124
PkrI GCNGC 1 cut(s) 61
Ple19I CGATCG 1 cut(s) 153
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
Psp6I CCWGG 1 cut(s) 234
PspFI CCCAGC 1 cut(s) 76
PspGI CCWGG 1 cut(s) 234
PspN4I GGNNCC 2 cut(s) 99, 396
PspPI GGNCC 2 cut(s) 333, 566
PstI CTGCAG 2 cut(s) 174, 322
PstNI CAGNNNCTG 1 cut(s) 404
PsyI GACNNNGTC 1 cut(s) 124
PvuI CGATCG 1 cut(s) 153
RruI TCGCGA 1 cut(s) 225
RsaI GTAC 2 cut(s) 550, 621
RsaNI GTAC 2 cut(s) 549, 620
SacII CCGCGG 1 cut(s) 597
SaqAI TTAA 1 cut(s) 477
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 2 cut(s) 33, 150
Sau96I GGNCC 2 cut(s) 333, 566
SchI GAGTC 1 cut(s) 51
ScrFI CCNGG 1 cut(s) 236
SfcI CTRYAG 2 cut(s) 170, 318
Sfr303I CCGCGG 1 cut(s) 597
SgrBI CCGCGG 1 cut(s) 597
SinI GGWCC 2 cut(s) 333, 566
Sse9I AATT 1 cut(s) 623
SsiI CCGC 3 cut(s) 60, 594, 596
SspMI CTAG 1 cut(s) 386
StyD4I CCNGG 1 cut(s) 234
StyI CCWWGG 5 cut(s) 93, 240, 246, 329, 462
TaiI ACGT 2 cut(s) 125, 258
TaqI TCGA 1 cut(s) 153
TasI AATT 1 cut(s) 623
TatI WGTACW 1 cut(s) 619
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 1 cut(s) 298
Tru1I TTAA 1 cut(s) 477
Tru9I TTAA 1 cut(s) 477
TspGWI ACGGA 2 cut(s) 156, 655
Tth111I GACNNNGTC 1 cut(s) 124
VpaK11BI GGWCC 2 cut(s) 333, 566
XspI CTAG 1 cut(s) 386
ZraI GACGTC 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.