Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007782.1

Orthogroup ID

OG0002365

Physical Location & Seq

Genomic Coordinates Reverse (-)

2460 .. 3980

Gene Structure 1521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007782.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

atgaggtggaggcgtggagctgctgtcatcatatccaagaaagctcgcgatgttcctcaggccaaggccatggattacgttggtggttatgcacttgctcttgatatgactgacagagagattcaagctactgctaaggaaatcagagcatcatcttcttcttcctctgttattcctttctgcctaatctctgccatttttaacagacccaaacgtcttcttcgccttaagcttcttaaccagccaccccctgaatccgcccctgccggcgaagacgctcgacgccaaggcccagcggccattcggactccgatcgacaaggcccagccccgattcggaacccaacgcctccaattgcggtcagcttcacgacggaggctccgaggtggtgagaaatcggcggcgtcgtggttcaagtttcacggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016787 GO:0016822 GO:0016823 GO:0018773 GO:0034545 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914

KEGG Pathways

Metabolic & Signaling

ko00350 ko01100 ko01120 map00350 map01100 map01120

Pfam Domains

Protein Families

FAA_hydrolase

Protein Analysis

142

Amino Acids

15.77

Weight (kDa)

11.47

Isoelectric Point (pI)

66.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16700 AT3G16700 AT3G16700 AT3G16700 AT4G15940
fragaria_vesca	FvH4_4g18580 FvH4_4g18580
malus_domestica	MD04G1020300.v1.1
prunus_persica	Prupe.1G124800_v2.0.a1 Prupe.1G125100_v2.0.a1
pyrus_communis	pycom10g01710 pycom10g01730 pycom16g13990
rosa_chinensis	RchiOBHm_Chr0c32g0501491 RchiOBHm_Chr4g0423181 RchiOBHm_Chr4g0423191
rosa_laevigata	RLG00000007578 RLG00000033195
rosa_multiflora	Rmu_sc0000580.1_g000006 Rmu_sc0003368.1_g000036 Rmu_sc0007269.1_g000013 Rmu_sc0007782.1_g000002 Rmu_sc0008829.1_g000004
rosa_roxburghii	Rroxscaffold_5G00365340 Rroxscaffold_5G00365370
rosa_rugosa	Rorug02G0398700 Rorug04G0185000 Rorug04G0185100
rosa_samantha	Rh2AG299600 Rh4AG244500 Rh4AG247800 Rh4BG249700 Rh4CG258800 Rh4DG244500 Rh5AG208600 Rh5AG217600 Rh5AG294800 Rh5BG129400 Rh5BG217400 Rh5DG211400 Rh6AG307700
rosa_wichuraiana	Rw4G021060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	213
AccII	CGCG	1 cut(s)	48
AciI	CCGC	4 cut(s)	258, 296, 358, 401
AcoI	YGGCCR	1 cut(s)	297
AcyI	GRCGYC	2 cut(s)	283, 404
AfiI	CCNNNNNNNGG	1 cut(s)	335
AflII	CTTAAG	1 cut(s)	227
AgsI	TTSAA	2 cut(s)	125, 415
AluBI	AGCT	5 cut(s)	20, 44, 128, 232, 365
AluI	AGCT	5 cut(s)	20, 44, 128, 232, 365
AoxI	GGCC	5 cut(s)	60, 66, 289, 297, 321
ApeKI	GCWGC	1 cut(s)	20
AspS9I	GGNCC	2 cut(s)	290, 322
AsuHPI	GGTGA	1 cut(s)	401
AxyI	CCTNAGG	1 cut(s)	57
BbsI	GAAGAC	2 cut(s)	209, 279
BbvI	GCAGC	1 cut(s)	7
BfrI	CTTAAG	1 cut(s)	227
BisI	GCNGC	3 cut(s)	21, 297, 402
BlsI	GCNGC	3 cut(s)	22, 298, 403
BmgT120I	GGNCC	2 cut(s)	290, 322
BmiI	GGNNCC	2 cut(s)	340, 380
BmsI	GCATC	1 cut(s)	158
BpiI	GAAGAC	2 cut(s)	209, 279
Bpu10I	CCTNAGC	1 cut(s)	135
BsaHI	GRCGYC	2 cut(s)	283, 404
BsaJI	CCNNGG	4 cut(s)	63, 69, 286, 382
BsaXI	ACNNNNNCTCC	4 cut(s)	9, 39, 363, 393
Bsc4I	CCNNNNNNNGG	1 cut(s)	335
Bse118I	RCCGGY	1 cut(s)	266
Bse21I	CCTNAGG	1 cut(s)	57
BseDI	CCNNGG	4 cut(s)	63, 69, 286, 382
BseLI	CCNNNNNNNGG	1 cut(s)	335
BseMII	CTCAG	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	7
BseYI	CCCAGC	2 cut(s)	292, 324
Bsh1236I	CGCG	1 cut(s)	48
Bsh1285I	CGRYCG	1 cut(s)	315
BshFI	GGCC	5 cut(s)	62, 68, 291, 299, 323
BsiEI	CGRYCG	1 cut(s)	315
BsiSI	CCGG	1 cut(s)	267
BslI	CCNNNNNNNGG	1 cut(s)	335
BsnI	GGCC	5 cut(s)	62, 68, 291, 299, 323
Bsp143I	GATC	1 cut(s)	312
Bsp19I	CCATGG	1 cut(s)	69
Bsp68I	TCGCGA	1 cut(s)	48
BspACI	CCGC	4 cut(s)	258, 296, 358, 401
BspANI	GGCC	5 cut(s)	62, 68, 291, 299, 323
BspCNI	CTCAG	1 cut(s)	70
BspFNI	CGCG	1 cut(s)	48
BspLI	GGNNCC	2 cut(s)	340, 380
BspTI	CTTAAG	1 cut(s)	227
BsrFI	RCCGGY	1 cut(s)	266
BssAI	RCCGGY	1 cut(s)	266
BssECI	CCNNGG	4 cut(s)	63, 69, 286, 382
BssMI	GATC	1 cut(s)	312
BssNI	GRCGYC	2 cut(s)	283, 404
BssT1I	CCWWGG	3 cut(s)	63, 69, 286
Bst4CI	ACNGT	1 cut(s)	425
BstACI	GRCGYC	2 cut(s)	283, 404
BstAFI	CTTAAG	1 cut(s)	227
BstC8I	GCNNGC	2 cut(s)	46, 268
BstDEI	CTNAG	2 cut(s)	57, 135
BstDSI	CCRYGG	1 cut(s)	69
BstFNI	CGCG	1 cut(s)	48
BstKTI	GATC	1 cut(s)	315
BstMBI	GATC	1 cut(s)	312
BstMCI	CGRYCG	1 cut(s)	315
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	7
BstV2I	GAAGAC	2 cut(s)	209, 279
BstXI	CCANNNNNNTGG	1 cut(s)	70
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	5 cut(s)	62, 68, 291, 299, 323
BtgI	CCRYGG	1 cut(s)	69
BtgZI	GCGATG	1 cut(s)	63
BtuMI	TCGCGA	1 cut(s)	48
Cac8I	GCNNGC	2 cut(s)	46, 268
Cfr10I	RCCGGY	1 cut(s)	266
Cfr13I	GGNCC	2 cut(s)	290, 322
CseI	GACGC	3 cut(s)	284, 291, 393
CviAII	CATG	1 cut(s)	70
DdeI	CTNAG	2 cut(s)	57, 135
DpnI	GATC	1 cut(s)	314
DpnII	GATC	1 cut(s)	312
DrdI	GACNNNNNNGTC	1 cut(s)	213
DseDI	GACNNNNNNGTC	1 cut(s)	213
EaeI	YGGCCR	1 cut(s)	297
EciI	GGCGGA	1 cut(s)	247
Eco130I	CCWWGG	3 cut(s)	63, 69, 286
Eco81I	CCTNAGG	1 cut(s)	57
EcoT14I	CCWWGG	3 cut(s)	63, 69, 286
ErhI	CCWWGG	3 cut(s)	63, 69, 286
FaeI	CATG	1 cut(s)	73
FaiI	YATR	4 cut(s)	32, 71, 90, 107
FatI	CATG	1 cut(s)	69
Fnu4HI	GCNGC	3 cut(s)	21, 297, 402
Fsp4HI	GCNGC	3 cut(s)	21, 297, 402
GluI	GCNGC	3 cut(s)	21, 297, 402
GsaI	CCCAGC	2 cut(s)	296, 328
HaeIII	GGCC	5 cut(s)	62, 68, 291, 299, 323
HapII	CCGG	1 cut(s)	267
HgaI	GACGC	3 cut(s)	284, 291, 393
Hin1I	GRCGYC	2 cut(s)	283, 404
Hin1II	CATG	1 cut(s)	73
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	4 cut(s)	121, 254, 307, 333
HpaII	CCGG	1 cut(s)	267
HphI	GGTGA	1 cut(s)	401
Hpy188I	TCNGA	5 cut(s)	146, 306, 312, 338, 383
Hpy188III	TCNNGA	3 cut(s)	47, 101, 369
Hpy99I	CGWCG	3 cut(s)	285, 375, 409
HpyCH4III	ACNGT	1 cut(s)	425
HpyCH4IV	ACGT	2 cut(s)	78, 214
HpyCH4V	TGCA	1 cut(s)	92
HpyF3I	CTNAG	2 cut(s)	57, 135
HpySE526I	ACGT	2 cut(s)	78, 214
Hsp92I	GRCGYC	2 cut(s)	283, 404
Hsp92II	CATG	1 cut(s)	73
KroI	GCCGGC	1 cut(s)	266
KroNI	GCCGGC	1 cut(s)	268
Kzo9I	GATC	1 cut(s)	312
LmnI	GCTCC	2 cut(s)	17, 384
LpnPI	CCDG	7 cut(s)	44, 254, 264, 276, 280, 306, 338
Lsp1109I	GCAGC	1 cut(s)	7
LweI	GCATC	1 cut(s)	158
MaeII	ACGT	2 cut(s)	78, 214
MalI	GATC	1 cut(s)	314
MboI	GATC	1 cut(s)	312
MboII	GAAGA	6 cut(s)	147, 150, 153, 209, 212, 284
MfeI	CAATTG	1 cut(s)	353
MluCI	AATT	1 cut(s)	353
MlyI	GAGTC	1 cut(s)	301
MnlI	CCTC	6 cut(s)	3, 66, 175, 359, 369, 377
MroNI	GCCGGC	1 cut(s)	266
MseI	TTAA	3 cut(s)	201, 228, 237
MspA1I	CMGCKG	1 cut(s)	296
MspCI	CTTAAG	1 cut(s)	227
MspI	CCGG	1 cut(s)	267
MunI	CAATTG	1 cut(s)	353
MvnI	CGCG	1 cut(s)	48
NaeI	GCCGGC	1 cut(s)	268
NcoI	CCATGG	1 cut(s)	69
NdeII	GATC	1 cut(s)	312
NgoMIV	GCCGGC	1 cut(s)	266
NlaIII	CATG	1 cut(s)	73
NlaIV	GGNNCC	2 cut(s)	340, 380
NruI	TCGCGA	1 cut(s)	48
PcsI	WCGNNNNNNNCGW	2 cut(s)	379, 404
PdiI	GCCGGC	1 cut(s)	268
PfeI	GAWTC	3 cut(s)	121, 254, 333
PkrI	GCNGC	3 cut(s)	22, 298, 403
Ple19I	CGATCG	1 cut(s)	315
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
PspFI	CCCAGC	2 cut(s)	292, 324
PspN4I	GGNNCC	2 cut(s)	340, 380
PspPI	GGNCC	2 cut(s)	290, 322
PvuI	CGATCG	1 cut(s)	315
RruI	TCGCGA	1 cut(s)	48
SaqAI	TTAA	3 cut(s)	201, 228, 237
SatI	GCNGC	3 cut(s)	21, 297, 402
Sau3AI	GATC	1 cut(s)	312
Sau96I	GGNCC	2 cut(s)	290, 322
SchI	GAGTC	1 cut(s)	301
SetI	ASST	9 cut(s)	8, 22, 46, 81, 130, 217, 234, 367, 388
SfaNI	GCATC	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	1 cut(s)	353
SsiI	CCGC	4 cut(s)	258, 296, 358, 401
StyI	CCWWGG	3 cut(s)	63, 69, 286
TaaI	ACNGT	1 cut(s)	425
TaiI	ACGT	2 cut(s)	81, 217
TaqI	TCGA	2 cut(s)	280, 315
TasI	AATT	1 cut(s)	353
TauI	GCSGC	2 cut(s)	299, 404
TfiI	GAWTC	3 cut(s)	121, 254, 333
Tru1I	TTAA	3 cut(s)	201, 228, 237
Tru9I	TTAA	3 cut(s)	201, 228, 237
TseI	GCWGC	1 cut(s)	20
TspGWI	ACGGA	1 cut(s)	388
Vha464I	CTTAAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.