Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002365

Physical Location & Seq

Genomic Coordinates Forward (+)

46877165 .. 46879230

Gene Structure 2066 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00365340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGCAAGCAGGCTTCTCCAAGTTGGCACTAAGATCATCGGAGTCGGCAGAAACTACGCCGCCCACGCCAAAGAGCTCGGCAACGCCGTCCCCAAGGAGCCTGTGCTGTTCCTCAAACCGACGTCGTCTTACTTGGAAAACGGAGGCACGATCGAAATCCCTCACCCTCTGCAGTCGTTGGACTATGAGGTGGAGCTGGCCGTCATCATATCCAAGAAAGCTCGCGATGTTCCCCAGGCCAAGGCCATGGATTATATTGGTTATGCACTTGCTCTTGATATGACTGCCAGAGAGATTCAAGCTACTGCTAAGTCTGCAGGTCTTCCATGGACCATTGCAAAAGGGCAGGACACCTTCACACCAATCAGTTCTGTGCTGTCCTTAGCAACGGTGCCAGACCCTGATGATTTGGAACTTTGGTTGAAGGTAGATGGAGAAGTGAGGCAGAAAGGCTCAACCAAGGACATGATATTTAAAATCCCATTTCTCATCAGCCACATAAGTTCCATTATGACACTTCTTGAAGGAGATGTAATACTAACAGGTACTCCCAAAGGTGTTGGTCCAGTAAAAGCAGGCCAAAAGATAACCGCGGGAATAACAAACCTTGTTGATGTAGAATTCAATATTGAAAAACGGAGGGAAGGAAGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016787 GO:0016822 GO:0016823 GO:0018773 GO:0034545 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914

KEGG Pathways

Metabolic & Signaling

ko00350 ko01100 ko01120 map00350 map01100 map01120

Pfam Domains

Protein Families

FAA_hydrolase

Protein Analysis

218

Amino Acids

23.5

Weight (kDa)

6.32

Isoelectric Point (pI)

34.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAA_hydrolase	PF01557	11 - 208	7.7e-62	Fumarylacetoacetate (FAA) hydrolase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16700 AT3G16700 AT3G16700 AT3G16700 AT4G15940
fragaria_vesca	FvH4_4g18580 FvH4_4g18580
malus_domestica	MD04G1020300.v1.1
prunus_persica	Prupe.1G124800_v2.0.a1 Prupe.1G125100_v2.0.a1
pyrus_communis	pycom10g01710 pycom10g01730 pycom16g13990
rosa_chinensis	RchiOBHm_Chr0c32g0501491 RchiOBHm_Chr4g0423181 RchiOBHm_Chr4g0423191
rosa_laevigata	RLG00000007578 RLG00000033195
rosa_multiflora	Rmu_sc0000580.1_g000006 Rmu_sc0003368.1_g000036 Rmu_sc0007269.1_g000013 Rmu_sc0007782.1_g000002 Rmu_sc0008829.1_g000004
rosa_roxburghii	Rroxscaffold_5G00365340 Rroxscaffold_5G00365370
rosa_rugosa	Rorug02G0398700 Rorug04G0185000 Rorug04G0185100
rosa_samantha	Rh2AG299600 Rh4AG244500 Rh4AG247800 Rh4BG249700 Rh4CG258800 Rh4DG244500 Rh5AG208600 Rh5AG217600 Rh5AG294800 Rh5BG129400 Rh5BG217400 Rh5DG211400 Rh6AG307700
rosa_wichuraiana	Rw4G021060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	125
Acc36I	ACCTGC	1 cut(s)	308
AccB1I	GGYRCC	1 cut(s)	391
AccII	CGCG	2 cut(s)	225, 593
AciI	CCGC	3 cut(s)	60, 591, 593
AcoI	YGGCCR	1 cut(s)	198
AcsI	RAATTY	1 cut(s)	620
AcyI	GRCGYC	1 cut(s)	122
AfaI	GTAC	1 cut(s)	547
AfiI	CCNNNNNNNGG	1 cut(s)	241
AgsI	TTSAA	5 cut(s)	299, 424, 524, 625, 632
AjnI	CCWGG	1 cut(s)	234
AluBI	AGCT	4 cut(s)	76, 196, 221, 302
AluI	AGCT	4 cut(s)	76, 196, 221, 302
Alw21I	GWGCWC	1 cut(s)	78
AlwNI	CAGNNNCTG	1 cut(s)	401
AoxI	GGCC	4 cut(s)	198, 237, 243, 577
ApoI	RAATTY	1 cut(s)	620
AspS9I	GGNCC	2 cut(s)	330, 563
AsuHPI	GGTGA	1 cut(s)	155
AvaII	GGWCC	2 cut(s)	330, 563
BanI	GGYRCC	1 cut(s)	391
BanII	GRGCYC	1 cut(s)	78
BbsI	GAAGAC	1 cut(s)	314
Bbv12I	GWGCWC	1 cut(s)	78
BccI	CCATC	1 cut(s)	425
BceAI	ACGGC	2 cut(s)	71, 185
BciT130I	CCWGG	1 cut(s)	236
BfmI	CTRYAG	2 cut(s)	170, 315
BfuAI	ACCTGC	1 cut(s)	308
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
Bme1390I	CCNGG	1 cut(s)	236
Bme18I	GGWCC	2 cut(s)	330, 563
BmgT120I	GGNCC	2 cut(s)	330, 563
BmiI	GGNNCC	2 cut(s)	99, 393
BmrFI	CCNGG	1 cut(s)	236
BpiI	GAAGAC	1 cut(s)	314
Bpu10I	CCTNAGC	1 cut(s)	382
BsaBI	GATNNNNATC	1 cut(s)	155
BsaHI	GRCGYC	1 cut(s)	122
BsaJI	CCNNGG	7 cut(s)	93, 234, 240, 246, 326, 459, 591
BsaXI	ACNNNNNCTCC	2 cut(s)	532, 562
Bsc4I	CCNNNNNNNGG	1 cut(s)	241
Bse1I	ACTGG	1 cut(s)	566
Bse3DI	GCAATG	1 cut(s)	333
Bse8I	GATNNNNATC	1 cut(s)	155
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	7 cut(s)	93, 234, 240, 246, 326, 459, 591
BseJI	GATNNNNATC	1 cut(s)	155
BseLI	CCNNNNNNNGG	1 cut(s)	241
BseMI	GCAATG	1 cut(s)	333
BseNI	ACTGG	1 cut(s)	566
Bsh1236I	CGCG	2 cut(s)	225, 593
Bsh1285I	CGRYCG	1 cut(s)	153
BshFI	GGCC	4 cut(s)	200, 239, 245, 579
BshNI	GGYRCC	1 cut(s)	391
BsiEI	CGRYCG	1 cut(s)	153
BsiHKAI	GWGCWC	1 cut(s)	78
BslFI	GGGAC	1 cut(s)	74
BslI	CCNNNNNNNGG	1 cut(s)	241
BsmFI	GGGAC	1 cut(s)	74
BsnI	GGCC	4 cut(s)	200, 239, 245, 579
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp143I	GATC	2 cut(s)	33, 150
Bsp19I	CCATGG	2 cut(s)	246, 326
Bsp68I	TCGCGA	1 cut(s)	225
BspACI	CCGC	3 cut(s)	60, 591, 593
BspANI	GGCC	4 cut(s)	200, 239, 245, 579
BspFNI	CGCG	2 cut(s)	225, 593
BspLI	GGNNCC	2 cut(s)	99, 393
BspMAI	CTGCAG	2 cut(s)	174, 319
BspMI	ACCTGC	1 cut(s)	308
BspT107I	GGYRCC	1 cut(s)	391
BsrDI	GCAATG	1 cut(s)	333
BsrI	ACTGG	1 cut(s)	566
BssECI	CCNNGG	7 cut(s)	93, 234, 240, 246, 326, 459, 591
BssMI	GATC	2 cut(s)	33, 150
BssNI	GRCGYC	1 cut(s)	122
BssT1I	CCWWGG	5 cut(s)	93, 240, 246, 326, 459
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	1 cut(s)	391
BstACI	GRCGYC	1 cut(s)	122
BstC8I	GCNNGC	5 cut(s)	7, 11, 198, 223, 577
BstDEI	CTNAG	3 cut(s)	30, 309, 382
BstDSI	CCRYGG	3 cut(s)	246, 326, 591
BstFNI	CGCG	2 cut(s)	225, 593
BstKTI	GATC	2 cut(s)	36, 153
BstMBI	GATC	2 cut(s)	33, 150
BstMCI	CGRYCG	1 cut(s)	153
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 314
BstNI	CCWGG	1 cut(s)	236
BstSCI	CCNGG	1 cut(s)	234
BstSFI	CTRYAG	2 cut(s)	170, 315
BstUI	CGCG	2 cut(s)	225, 593
BstV2I	GAAGAC	1 cut(s)	314
BstXI	CCANNNNNNTGG	1 cut(s)	247
BsuRI	GGCC	4 cut(s)	200, 239, 245, 579
BtgI	CCRYGG	3 cut(s)	246, 326, 591
BtgZI	GCGATG	1 cut(s)	240
BtuMI	TCGCGA	1 cut(s)	225
BveI	ACCTGC	1 cut(s)	308
Cac8I	GCNNGC	5 cut(s)	7, 11, 198, 223, 577
CaiI	CAGNNNCTG	1 cut(s)	401
Cfr13I	GGNCC	2 cut(s)	330, 563
Cfr42I	CCGCGG	1 cut(s)	594
Csp6I	GTAC	1 cut(s)	546
CviAII	CATG	3 cut(s)	247, 327, 466
CviQI	GTAC	1 cut(s)	546
DdeI	CTNAG	3 cut(s)	30, 309, 382
DpnI	GATC	2 cut(s)	35, 152
DpnII	GATC	2 cut(s)	33, 150
DraI	TTTAAA	1 cut(s)	475
EaeI	YGGCCR	1 cut(s)	198
Ecl136II	GAGCTC	1 cut(s)	76
Eco130I	CCWWGG	5 cut(s)	93, 240, 246, 326, 459
Eco24I	GRGCYC	1 cut(s)	78
Eco47I	GGWCC	2 cut(s)	330, 563
Eco53kI	GAGCTC	1 cut(s)	76
EcoICRI	GAGCTC	1 cut(s)	76
EcoRI	GAATTC	1 cut(s)	620
EcoRII	CCWGG	1 cut(s)	234
EcoT14I	CCWWGG	5 cut(s)	93, 240, 246, 326, 459
EcoT38I	GRGCYC	1 cut(s)	78
ErhI	CCWWGG	5 cut(s)	93, 240, 246, 326, 459
FaeI	CATG	3 cut(s)	250, 330, 469
FaqI	GGGAC	1 cut(s)	74
FatI	CATG	3 cut(s)	246, 326, 465
FauI	CCCGC	1 cut(s)	586
Fnu4HI	GCNGC	1 cut(s)	60
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	1 cut(s)	60
GluI	GCNGC	1 cut(s)	60
HaeIII	GGCC	4 cut(s)	200, 239, 245, 579
Hin1I	GRCGYC	1 cut(s)	122
Hin1II	CATG	3 cut(s)	250, 330, 469
HinfI	GANTC	2 cut(s)	42, 295
HphI	GGTGA	1 cut(s)	155
Hpy188I	TCNGA	1 cut(s)	41
Hpy188III	TCNNGA	4 cut(s)	224, 275, 521, 654
Hpy99I	CGWCG	2 cut(s)	124, 127
HpyAV	CCTTC	4 cut(s)	364, 418, 518, 638
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4IV	ACGT	1 cut(s)	122
HpyCH4V	TGCA	4 cut(s)	172, 266, 317, 338
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 314
HpyF3I	CTNAG	3 cut(s)	30, 309, 382
HpySE526I	ACGT	1 cut(s)	122
Hsp92I	GRCGYC	1 cut(s)	122
Hsp92II	CATG	3 cut(s)	250, 330, 469
KspI	CCGCGG	1 cut(s)	594
Kzo9I	GATC	2 cut(s)	33, 150
LmnI	GCTCC	2 cut(s)	97, 193
MaeII	ACGT	1 cut(s)	122
MalI	GATC	2 cut(s)	35, 152
MboI	GATC	2 cut(s)	33, 150
MboII	GAAGA	1 cut(s)	314
MhlI	GDGCHC	1 cut(s)	78
MluCI	AATT	1 cut(s)	620
MlyI	GAGTC	1 cut(s)	51
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	7 cut(s)	122, 137, 171, 177, 181, 435, 633
MseI	TTAA	1 cut(s)	474
MspA1I	CMGCKG	1 cut(s)	593
MspR9I	CCNGG	1 cut(s)	236
MvaI	CCWGG	1 cut(s)	236
MvnI	CGCG	2 cut(s)	225, 593
MwoI	GCNNNNNNNGC	2 cut(s)	65, 314
NcoI	CCATGG	2 cut(s)	246, 326
NdeII	GATC	2 cut(s)	33, 150
NlaIII	CATG	3 cut(s)	250, 330, 469
NlaIV	GGNNCC	2 cut(s)	99, 393
NmeAIII	GCCGAG	1 cut(s)	57
NruI	TCGCGA	1 cut(s)	225
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	295
PflFI	GACNNNGTC	1 cut(s)	124
PkrI	GCNGC	1 cut(s)	61
Ple19I	CGATCG	1 cut(s)	153
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
Psp124BI	GAGCTC	1 cut(s)	78
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	2 cut(s)	99, 393
PspPI	GGNCC	2 cut(s)	330, 563
PstI	CTGCAG	2 cut(s)	174, 319
PstNI	CAGNNNCTG	1 cut(s)	401
PsyI	GACNNNGTC	1 cut(s)	124
PvuI	CGATCG	1 cut(s)	153
RruI	TCGCGA	1 cut(s)	225
RsaI	GTAC	1 cut(s)	547
RsaNI	GTAC	1 cut(s)	546
SacI	GAGCTC	1 cut(s)	78
SacII	CCGCGG	1 cut(s)	594
SaqAI	TTAA	1 cut(s)	474
SatI	GCNGC	1 cut(s)	60
Sau3AI	GATC	2 cut(s)	33, 150
Sau96I	GGNCC	2 cut(s)	330, 563
SchI	GAGTC	1 cut(s)	51
ScrFI	CCNGG	1 cut(s)	236
SduI	GDGCHC	1 cut(s)	78
SfcI	CTRYAG	2 cut(s)	170, 315
Sfr303I	CCGCGG	1 cut(s)	594
SgrBI	CCGCGG	1 cut(s)	594
SinI	GGWCC	2 cut(s)	330, 563
Sse9I	AATT	1 cut(s)	620
SsiI	CCGC	3 cut(s)	60, 591, 593
SspI	AATATT	1 cut(s)	628
SstI	GAGCTC	1 cut(s)	78
StyD4I	CCNGG	1 cut(s)	234
StyI	CCWWGG	5 cut(s)	93, 240, 246, 326, 459
TaaI	ACNGT	1 cut(s)	391
TaiI	ACGT	1 cut(s)	125
TaqI	TCGA	1 cut(s)	153
TasI	AATT	1 cut(s)	620
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	1 cut(s)	295
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TspGWI	ACGGA	2 cut(s)	156, 652
Tth111I	GACNNNGTC	1 cut(s)	124
VpaK11BI	GGWCC	2 cut(s)	330, 563
XapI	RAATTY	1 cut(s)	620
ZraI	GACGTC	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.