Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002365

Physical Location & Seq

Genomic Coordinates Forward (+)

48812355 .. 48814569

Gene Structure 2215 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39260

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCAAGCAGGCTTCTCCAAGTTGGCACTAAGATTATCGGAGTCGGCAGAAACTACGCCGCCCACGCCAAAGAGCTCGGCAACGCCGTCCCCAAGGAGCCTGTGCTGTTCCTCAAACCGACGTCGTCTTACTTGGAAAACGGAGGCACGATCGAAATCCCTCACCCTCTGCAGTCGTTGGACTATGAGGTGGAGCTGGCCGTCATCATATCCAAAAAAGCTCGCGATGTTCCCCAGGCCAAGTCCATGGATTACGTTGGTGGTTATGCACTTGCTCTTGATATGACTGCCAGAGAGATTCAAGCTACTGCTAAGTCTGCAGGTCTTCCATGGACCATTGCAAAAGGGCAGGACACCTTCACACCAATCAGTTCTGTGCTGTCCCTAGCAACGGTGCCAGACCCTGATGATTTGGAACTTTGGTTGAAGGTAGATGGAGAAGTGAGGCAGAAAGGCTCAACCAAGGACATGATATTTAAAATCCCATTTCTCATCAGCCACATAAGTTCCATTATGACACTTCTTGAAGGAGATGTAATACTAACAGGTACTCCCAAAGGTGTTGGTCCAGTAAAAGCAGGCCAAAAGATAACCGCGGGAATAACAAACCTTGTTGATGTAGAATTCAATATTGAAAAACGGAGGCAAGGAAGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016787 GO:0016822 GO:0016823 GO:0018773 GO:0034545 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914

KEGG Pathways

Metabolic & Signaling

ko00350 ko01100 ko01120 map00350 map01100 map01120

Pfam Domains

Protein Families

FAA_hydrolase

Protein Analysis

219

Amino Acids

23.55

Weight (kDa)

6.85

Isoelectric Point (pI)

35.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAA_hydrolase	PF01557	11 - 209	4.8e-63	Fumarylacetoacetate (FAA) hydrolase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16700 AT3G16700 AT3G16700 AT3G16700 AT4G15940
fragaria_vesca	FvH4_4g18580 FvH4_4g18580
malus_domestica	MD04G1020300.v1.1
prunus_persica	Prupe.1G124800_v2.0.a1 Prupe.1G125100_v2.0.a1
pyrus_communis	pycom10g01710 pycom10g01730 pycom16g13990
rosa_chinensis	RchiOBHm_Chr0c32g0501491 RchiOBHm_Chr4g0423181 RchiOBHm_Chr4g0423191
rosa_laevigata	RLG00000007578 RLG00000033195
rosa_multiflora	Rmu_sc0000580.1_g000006 Rmu_sc0003368.1_g000036 Rmu_sc0007269.1_g000013 Rmu_sc0007782.1_g000002 Rmu_sc0008829.1_g000004
rosa_roxburghii	Rroxscaffold_5G00365340 Rroxscaffold_5G00365370
rosa_rugosa	Rorug02G0398700 Rorug04G0185000 Rorug04G0185100
rosa_samantha	Rh2AG299600 Rh4AG244500 Rh4AG247800 Rh4BG249700 Rh4CG258800 Rh4DG244500 Rh5AG208600 Rh5AG217600 Rh5AG294800 Rh5BG129400 Rh5BG217400 Rh5DG211400 Rh6AG307700
rosa_wichuraiana	Rw4G021060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	125
Acc36I	ACCTGC	1 cut(s)	311
AccB1I	GGYRCC	1 cut(s)	394
AccII	CGCG	2 cut(s)	225, 596
AciI	CCGC	3 cut(s)	60, 594, 596
AcoI	YGGCCR	1 cut(s)	198
AcsI	RAATTY	1 cut(s)	623
AcyI	GRCGYC	1 cut(s)	122
AfaI	GTAC	1 cut(s)	550
AfiI	CCNNNNNNNGG	1 cut(s)	391
AgsI	TTSAA	5 cut(s)	302, 427, 527, 628, 635
AjnI	CCWGG	1 cut(s)	234
AluBI	AGCT	4 cut(s)	76, 196, 221, 305
AluI	AGCT	4 cut(s)	76, 196, 221, 305
Alw21I	GWGCWC	1 cut(s)	78
AlwNI	CAGNNNCTG	1 cut(s)	404
AoxI	GGCC	3 cut(s)	198, 237, 580
ApoI	RAATTY	1 cut(s)	623
AspS9I	GGNCC	2 cut(s)	333, 566
AsuHPI	GGTGA	1 cut(s)	155
AvaII	GGWCC	2 cut(s)	333, 566
BanI	GGYRCC	1 cut(s)	394
BanII	GRGCYC	1 cut(s)	78
BbsI	GAAGAC	1 cut(s)	317
Bbv12I	GWGCWC	1 cut(s)	78
BccI	CCATC	1 cut(s)	428
BceAI	ACGGC	2 cut(s)	71, 185
BciT130I	CCWGG	1 cut(s)	236
BfaI	CTAG	1 cut(s)	386
BfmI	CTRYAG	2 cut(s)	170, 318
BfuAI	ACCTGC	1 cut(s)	311
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
Bme1390I	CCNGG	1 cut(s)	236
Bme18I	GGWCC	2 cut(s)	333, 566
BmgT120I	GGNCC	2 cut(s)	333, 566
BmiI	GGNNCC	2 cut(s)	99, 396
BmrFI	CCNGG	1 cut(s)	236
BpiI	GAAGAC	1 cut(s)	317
BsaBI	GATNNNNATC	1 cut(s)	155
BsaHI	GRCGYC	1 cut(s)	122
BsaJI	CCNNGG	6 cut(s)	93, 234, 246, 329, 462, 594
BsaXI	ACNNNNNCTCC	2 cut(s)	535, 565
Bsc4I	CCNNNNNNNGG	1 cut(s)	391
Bse1I	ACTGG	1 cut(s)	569
Bse3DI	GCAATG	1 cut(s)	336
Bse8I	GATNNNNATC	1 cut(s)	155
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	6 cut(s)	93, 234, 246, 329, 462, 594
BseJI	GATNNNNATC	1 cut(s)	155
BseLI	CCNNNNNNNGG	1 cut(s)	391
BseMI	GCAATG	1 cut(s)	336
BseNI	ACTGG	1 cut(s)	569
Bsh1236I	CGCG	2 cut(s)	225, 596
Bsh1285I	CGRYCG	1 cut(s)	153
BshFI	GGCC	3 cut(s)	200, 239, 582
BshNI	GGYRCC	1 cut(s)	394
BsiEI	CGRYCG	1 cut(s)	153
BsiHKAI	GWGCWC	1 cut(s)	78
BslFI	GGGAC	2 cut(s)	74, 367
BslI	CCNNNNNNNGG	1 cut(s)	391
BsmFI	GGGAC	2 cut(s)	74, 367
BsnI	GGCC	3 cut(s)	200, 239, 582
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp143I	GATC	1 cut(s)	150
Bsp19I	CCATGG	2 cut(s)	246, 329
Bsp68I	TCGCGA	1 cut(s)	225
BspACI	CCGC	3 cut(s)	60, 594, 596
BspANI	GGCC	3 cut(s)	200, 239, 582
BspFNI	CGCG	2 cut(s)	225, 596
BspLI	GGNNCC	2 cut(s)	99, 396
BspMAI	CTGCAG	2 cut(s)	174, 322
BspMI	ACCTGC	1 cut(s)	311
BspT107I	GGYRCC	1 cut(s)	394
BsrDI	GCAATG	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	569
BssECI	CCNNGG	6 cut(s)	93, 234, 246, 329, 462, 594
BssMI	GATC	1 cut(s)	150
BssNI	GRCGYC	1 cut(s)	122
BssT1I	CCWWGG	4 cut(s)	93, 246, 329, 462
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	1 cut(s)	394
BstACI	GRCGYC	1 cut(s)	122
BstC8I	GCNNGC	5 cut(s)	7, 11, 198, 223, 580
BstDEI	CTNAG	2 cut(s)	30, 312
BstDSI	CCRYGG	3 cut(s)	246, 329, 594
BstFNI	CGCG	2 cut(s)	225, 596
BstKTI	GATC	1 cut(s)	153
BstMBI	GATC	1 cut(s)	150
BstMCI	CGRYCG	1 cut(s)	153
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 317
BstNI	CCWGG	1 cut(s)	236
BstSCI	CCNGG	1 cut(s)	234
BstSFI	CTRYAG	2 cut(s)	170, 318
BstUI	CGCG	2 cut(s)	225, 596
BstV2I	GAAGAC	1 cut(s)	317
BstXI	CCANNNNNNTGG	1 cut(s)	247
BsuRI	GGCC	3 cut(s)	200, 239, 582
BtgI	CCRYGG	3 cut(s)	246, 329, 594
BtgZI	GCGATG	1 cut(s)	240
BtuMI	TCGCGA	1 cut(s)	225
BveI	ACCTGC	1 cut(s)	311
Cac8I	GCNNGC	5 cut(s)	7, 11, 198, 223, 580
CaiI	CAGNNNCTG	1 cut(s)	404
Cfr13I	GGNCC	2 cut(s)	333, 566
Cfr42I	CCGCGG	1 cut(s)	597
Csp6I	GTAC	1 cut(s)	549
CviAII	CATG	3 cut(s)	247, 330, 469
CviQI	GTAC	1 cut(s)	549
DdeI	CTNAG	2 cut(s)	30, 312
DpnI	GATC	1 cut(s)	152
DpnII	GATC	1 cut(s)	150
DraI	TTTAAA	1 cut(s)	478
EaeI	YGGCCR	1 cut(s)	198
Ecl136II	GAGCTC	1 cut(s)	76
Eco130I	CCWWGG	4 cut(s)	93, 246, 329, 462
Eco24I	GRGCYC	1 cut(s)	78
Eco47I	GGWCC	2 cut(s)	333, 566
Eco53kI	GAGCTC	1 cut(s)	76
EcoICRI	GAGCTC	1 cut(s)	76
EcoRI	GAATTC	1 cut(s)	623
EcoRII	CCWGG	1 cut(s)	234
EcoT14I	CCWWGG	4 cut(s)	93, 246, 329, 462
EcoT38I	GRGCYC	1 cut(s)	78
ErhI	CCWWGG	4 cut(s)	93, 246, 329, 462
FaeI	CATG	3 cut(s)	250, 333, 472
FaiI	YATR	9 cut(s)	186, 209, 248, 267, 284, 331, 470, 503, 515
FaqI	GGGAC	2 cut(s)	74, 367
FatI	CATG	3 cut(s)	246, 329, 468
FauI	CCCGC	1 cut(s)	589
Fnu4HI	GCNGC	1 cut(s)	60
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	1 cut(s)	60
FspBI	CTAG	1 cut(s)	386
GluI	GCNGC	1 cut(s)	60
HaeIII	GGCC	3 cut(s)	200, 239, 582
Hin1I	GRCGYC	1 cut(s)	122
Hin1II	CATG	3 cut(s)	250, 333, 472
HinfI	GANTC	2 cut(s)	42, 298
HphI	GGTGA	1 cut(s)	155
Hpy188I	TCNGA	1 cut(s)	41
Hpy188III	TCNNGA	4 cut(s)	224, 278, 524, 657
Hpy99I	CGWCG	2 cut(s)	124, 127
HpyAV	CCTTC	3 cut(s)	367, 421, 521
HpyCH4III	ACNGT	1 cut(s)	394
HpyCH4IV	ACGT	2 cut(s)	122, 255
HpyCH4V	TGCA	4 cut(s)	172, 269, 320, 341
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 317
HpyF3I	CTNAG	2 cut(s)	30, 312
HpySE526I	ACGT	2 cut(s)	122, 255
Hsp92I	GRCGYC	1 cut(s)	122
Hsp92II	CATG	3 cut(s)	250, 333, 472
KspI	CCGCGG	1 cut(s)	597
Kzo9I	GATC	1 cut(s)	150
LmnI	GCTCC	2 cut(s)	97, 193
MaeI	CTAG	1 cut(s)	386
MaeII	ACGT	2 cut(s)	122, 255
MalI	GATC	1 cut(s)	152
MboI	GATC	1 cut(s)	150
MboII	GAAGA	1 cut(s)	317
MhlI	GDGCHC	1 cut(s)	78
MluCI	AATT	1 cut(s)	623
MlyI	GAGTC	1 cut(s)	51
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	7 cut(s)	122, 137, 171, 177, 181, 438, 636
MseI	TTAA	1 cut(s)	477
MspA1I	CMGCKG	1 cut(s)	596
MspR9I	CCNGG	1 cut(s)	236
MvaI	CCWGG	1 cut(s)	236
MvnI	CGCG	2 cut(s)	225, 596
MwoI	GCNNNNNNNGC	2 cut(s)	65, 317
NcoI	CCATGG	2 cut(s)	246, 329
NdeII	GATC	1 cut(s)	150
NlaIII	CATG	3 cut(s)	250, 333, 472
NlaIV	GGNNCC	2 cut(s)	99, 396
NmeAIII	GCCGAG	1 cut(s)	57
NruI	TCGCGA	1 cut(s)	225
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	298
PflFI	GACNNNGTC	1 cut(s)	124
PkrI	GCNGC	1 cut(s)	61
Ple19I	CGATCG	1 cut(s)	153
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
Psp124BI	GAGCTC	1 cut(s)	78
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	2 cut(s)	99, 396
PspPI	GGNCC	2 cut(s)	333, 566
PstI	CTGCAG	2 cut(s)	174, 322
PstNI	CAGNNNCTG	1 cut(s)	404
PsyI	GACNNNGTC	1 cut(s)	124
PvuI	CGATCG	1 cut(s)	153
RruI	TCGCGA	1 cut(s)	225
RsaI	GTAC	1 cut(s)	550
RsaNI	GTAC	1 cut(s)	549
SacI	GAGCTC	1 cut(s)	78
SacII	CCGCGG	1 cut(s)	597
SaqAI	TTAA	1 cut(s)	477
SatI	GCNGC	1 cut(s)	60
Sau3AI	GATC	1 cut(s)	150
Sau96I	GGNCC	2 cut(s)	333, 566
SchI	GAGTC	1 cut(s)	51
ScrFI	CCNGG	1 cut(s)	236
SduI	GDGCHC	1 cut(s)	78
SfcI	CTRYAG	2 cut(s)	170, 318
Sfr303I	CCGCGG	1 cut(s)	597
SgrBI	CCGCGG	1 cut(s)	597
SinI	GGWCC	2 cut(s)	333, 566
Sse9I	AATT	1 cut(s)	623
SsiI	CCGC	3 cut(s)	60, 594, 596
SspI	AATATT	1 cut(s)	631
SspMI	CTAG	1 cut(s)	386
SstI	GAGCTC	1 cut(s)	78
StyD4I	CCNGG	1 cut(s)	234
StyI	CCWWGG	4 cut(s)	93, 246, 329, 462
TaaI	ACNGT	1 cut(s)	394
TaiI	ACGT	2 cut(s)	125, 258
TaqI	TCGA	1 cut(s)	153
TasI	AATT	1 cut(s)	623
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	1 cut(s)	298
Tru1I	TTAA	1 cut(s)	477
Tru9I	TTAA	1 cut(s)	477
TspGWI	ACGGA	2 cut(s)	156, 655
Tth111I	GACNNNGTC	1 cut(s)	124
VpaK11BI	GGWCC	2 cut(s)	333, 566
XapI	RAATTY	1 cut(s)	623
XspI	CTAG	1 cut(s)	386
ZraI	GACGTC	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.