Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007269.1

Orthogroup ID

OG0002365

Physical Location & Seq

Genomic Coordinates Reverse (-)

78321 .. 80647

Gene Structure 2327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007269.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

atggcaagcaggcttttacaagtaggcactaagatcatcggagtcggcagaaactacgccgcccacgccaaagagctcggcaacgccgtccccaaggagcctgtgcttttcctcaaaccgacgtcgtcttacttggaaaacggaggcacgatcgaaatccctcaccctctgcagtcattggactatgaggtggagctggccgtcatcatatccaagaaagctcgcgatgttccccaggccatggattacgttggtggttatgcacttgctcttgatatgactgccagagagattcaagctactgctaagtctgcaggtcttccatggaccatagcaaaagggcaggacaccttcacaccaatcagttctgtgttgtccctagcatcggtgccagaccctgacgatttggaactttggttgaaggtagatggagaagtgaggcaaaaaggctcaaccaaggatatgatatttaaaatcccatttctcatcagccacataagttccattatgacacttctggaaggagatgtaatactaacaggtactcccaaaggtattggtccagtaaaagcaggccaaaagataaccgcgggaataacaaaccttgtggatgtacaattcaatgttgacaaacggaggcaagaccttctcttctgcttgttctgctggacagaatctcacttctctttggtcgtctacgtggccattggtcaattctacgaccgtaccaagctcttatgtttgttcttgttccagcgtaggatttctatacctgttgacgtacttatagaagcggccagagcagaaccataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016787 GO:0016822 GO:0016823 GO:0018773 GO:0034545 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914

KEGG Pathways

Metabolic & Signaling

ko00350 ko01100 ko01120 map00350 map01100 map01120

Pfam Domains

Protein Families

FAA_hydrolase

Protein Analysis

270

Amino Acids

29.63

Weight (kDa)

6.44

Isoelectric Point (pI)

34.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16700 AT3G16700 AT3G16700 AT3G16700 AT4G15940
fragaria_vesca	FvH4_4g18580 FvH4_4g18580
malus_domestica	MD04G1020300.v1.1
prunus_persica	Prupe.1G124800_v2.0.a1 Prupe.1G125100_v2.0.a1
pyrus_communis	pycom10g01710 pycom10g01730 pycom16g13990
rosa_chinensis	RchiOBHm_Chr0c32g0501491 RchiOBHm_Chr4g0423181 RchiOBHm_Chr4g0423191
rosa_laevigata	RLG00000007578 RLG00000033195
rosa_multiflora	Rmu_sc0000580.1_g000006 Rmu_sc0003368.1_g000036 Rmu_sc0007269.1_g000013 Rmu_sc0007782.1_g000002 Rmu_sc0008829.1_g000004
rosa_roxburghii	Rroxscaffold_5G00365340 Rroxscaffold_5G00365370
rosa_rugosa	Rorug02G0398700 Rorug04G0185000 Rorug04G0185100
rosa_samantha	Rh2AG299600 Rh4AG244500 Rh4AG247800 Rh4BG249700 Rh4CG258800 Rh4DG244500 Rh5AG208600 Rh5AG217600 Rh5AG294800 Rh5BG129400 Rh5BG217400 Rh5DG211400 Rh6AG307700
rosa_wichuraiana	Rw4G021060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	125
Acc36I	ACCTGC	1 cut(s)	305
AccB1I	GGYRCC	1 cut(s)	388
AccB7I	CCANNNNNTGG	1 cut(s)	241
AccI	GTMKAC	1 cut(s)	696
AccII	CGCG	2 cut(s)	225, 590
AciI	CCGC	4 cut(s)	60, 588, 590, 794
AcoI	YGGCCR	3 cut(s)	198, 702, 795
AcyI	GRCGYC	1 cut(s)	122
AfaI	GTAC	4 cut(s)	544, 615, 727, 783
AfiI	CCNNNNNNNGG	2 cut(s)	241, 385
AgsI	TTSAA	3 cut(s)	296, 421, 622
AjnI	CCWGG	1 cut(s)	234
AluBI	AGCT	5 cut(s)	76, 196, 221, 299, 733
AluI	AGCT	5 cut(s)	76, 196, 221, 299, 733
Alw21I	GWGCWC	1 cut(s)	78
AlwNI	CAGNNNCTG	1 cut(s)	398
AoxI	GGCC	5 cut(s)	198, 237, 574, 702, 795
AspS9I	GGNCC	2 cut(s)	327, 560
AsuHPI	GGTGA	1 cut(s)	155
AvaII	GGWCC	2 cut(s)	327, 560
BaeI	ACNNNNGTAYC	2 cut(s)	709, 742
BalI	TGGCCA	1 cut(s)	704
BanI	GGYRCC	1 cut(s)	388
BanII	GRGCYC	1 cut(s)	78
BbsI	GAAGAC	1 cut(s)	311
Bbv12I	GWGCWC	1 cut(s)	78
BccI	CCATC	1 cut(s)	422
BceAI	ACGGC	2 cut(s)	71, 185
BciT130I	CCWGG	1 cut(s)	236
BfaI	CTAG	1 cut(s)	380
BfmI	CTRYAG	2 cut(s)	170, 312
BfuAI	ACCTGC	1 cut(s)	305
BisI	GCNGC	2 cut(s)	60, 795
BlsI	GCNGC	2 cut(s)	61, 796
Bme1390I	CCNGG	1 cut(s)	236
Bme18I	GGWCC	2 cut(s)	327, 560
BmgT120I	GGNCC	2 cut(s)	327, 560
BmiI	GGNNCC	2 cut(s)	99, 390
BmrFI	CCNGG	1 cut(s)	236
BmsI	GCATC	1 cut(s)	392
BpiI	GAAGAC	1 cut(s)	311
BsaAI	YACGTR	1 cut(s)	700
BsaBI	GATNNNNATC	1 cut(s)	155
BsaHI	GRCGYC	1 cut(s)	122
BsaJI	CCNNGG	6 cut(s)	93, 234, 240, 323, 456, 588
BsaXI	ACNNNNNCTCC	2 cut(s)	529, 559
Bsc4I	CCNNNNNNNGG	2 cut(s)	241, 385
Bse1I	ACTGG	1 cut(s)	563
Bse8I	GATNNNNATC	1 cut(s)	155
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	6 cut(s)	93, 234, 240, 323, 456, 588
BseGI	GGATG	1 cut(s)	616
BseJI	GATNNNNATC	1 cut(s)	155
BseLI	CCNNNNNNNGG	2 cut(s)	241, 385
BseNI	ACTGG	1 cut(s)	563
Bsh1236I	CGCG	2 cut(s)	225, 590
Bsh1285I	CGRYCG	2 cut(s)	153, 724
BshFI	GGCC	5 cut(s)	200, 239, 576, 704, 797
BshNI	GGYRCC	1 cut(s)	388
BsiEI	CGRYCG	2 cut(s)	153, 724
BsiHKAI	GWGCWC	1 cut(s)	78
BslFI	GGGAC	2 cut(s)	74, 361
BslI	CCNNNNNNNGG	2 cut(s)	241, 385
BsmFI	GGGAC	2 cut(s)	74, 361
BsnI	GGCC	5 cut(s)	200, 239, 576, 704, 797
Bsp1286I	GDGCHC	1 cut(s)	78
Bsp1407I	TGTACA	1 cut(s)	613
Bsp143I	GATC	2 cut(s)	33, 150
Bsp19I	CCATGG	2 cut(s)	240, 323
Bsp68I	TCGCGA	1 cut(s)	225
BspACI	CCGC	4 cut(s)	60, 588, 590, 794
BspANI	GGCC	5 cut(s)	200, 239, 576, 704, 797
BspFNI	CGCG	2 cut(s)	225, 590
BspLI	GGNNCC	2 cut(s)	99, 390
BspMAI	CTGCAG	2 cut(s)	174, 316
BspMI	ACCTGC	1 cut(s)	305
BspT107I	GGYRCC	1 cut(s)	388
BsrGI	TGTACA	1 cut(s)	613
BsrI	ACTGG	1 cut(s)	563
BssECI	CCNNGG	6 cut(s)	93, 234, 240, 323, 456, 588
BssMI	GATC	2 cut(s)	33, 150
BssNI	GRCGYC	1 cut(s)	122
BssT1I	CCWWGG	4 cut(s)	93, 240, 323, 456
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	1 cut(s)	725
Bst6I	CTCTTC	1 cut(s)	656
BstACI	GRCGYC	1 cut(s)	122
BstAUI	TGTACA	1 cut(s)	613
BstBAI	YACGTR	1 cut(s)	700
BstC8I	GCNNGC	5 cut(s)	7, 11, 198, 223, 574
BstDEI	CTNAG	2 cut(s)	30, 306
BstDSI	CCRYGG	3 cut(s)	240, 323, 588
BstF5I	GGATG	1 cut(s)	616
BstFNI	CGCG	2 cut(s)	225, 590
BstKTI	GATC	2 cut(s)	36, 153
BstMBI	GATC	2 cut(s)	33, 150
BstMCI	CGRYCG	2 cut(s)	153, 724
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 311, 663, 800
BstNI	CCWGG	1 cut(s)	236
BstSCI	CCNGG	1 cut(s)	234
BstSFI	CTRYAG	2 cut(s)	170, 312
BstUI	CGCG	2 cut(s)	225, 590
BstV2I	GAAGAC	1 cut(s)	311
BsuRI	GGCC	5 cut(s)	200, 239, 576, 704, 797
BtgI	CCRYGG	3 cut(s)	240, 323, 588
BtgZI	GCGATG	1 cut(s)	240
BtsCI	GGATG	1 cut(s)	616
BtuMI	TCGCGA	1 cut(s)	225
BveI	ACCTGC	1 cut(s)	305
Cac8I	GCNNGC	5 cut(s)	7, 11, 198, 223, 574
CaiI	CAGNNNCTG	1 cut(s)	398
Cfr13I	GGNCC	2 cut(s)	327, 560
Cfr42I	CCGCGG	1 cut(s)	591
Csp6I	GTAC	4 cut(s)	543, 614, 726, 782
CspCI	CAANNNNNGTGG	2 cut(s)	588, 623
CviAII	CATG	2 cut(s)	241, 324
CviQI	GTAC	4 cut(s)	543, 614, 726, 782
DdeI	CTNAG	2 cut(s)	30, 306
DpnI	GATC	2 cut(s)	35, 152
DpnII	GATC	2 cut(s)	33, 150
DraI	TTTAAA	1 cut(s)	472
EaeI	YGGCCR	3 cut(s)	198, 702, 795
Eam1104I	CTCTTC	1 cut(s)	656
EarI	CTCTTC	1 cut(s)	656
Ecl136II	GAGCTC	1 cut(s)	76
Eco130I	CCWWGG	4 cut(s)	93, 240, 323, 456
Eco24I	GRGCYC	1 cut(s)	78
Eco47I	GGWCC	2 cut(s)	327, 560
Eco53kI	GAGCTC	1 cut(s)	76
EcoICRI	GAGCTC	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	234
EcoT14I	CCWWGG	4 cut(s)	93, 240, 323, 456
EcoT38I	GRGCYC	1 cut(s)	78
ErhI	CCWWGG	4 cut(s)	93, 240, 323, 456
FaeI	CATG	2 cut(s)	244, 327
FaqI	GGGAC	2 cut(s)	74, 361
FatI	CATG	2 cut(s)	240, 323
FauI	CCCGC	1 cut(s)	583
FblI	GTMKAC	1 cut(s)	696
Fnu4HI	GCNGC	2 cut(s)	60, 795
FokI	GGATG	1 cut(s)	623
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	2 cut(s)	60, 795
FspBI	CTAG	1 cut(s)	380
GluI	GCNGC	2 cut(s)	60, 795
HaeIII	GGCC	5 cut(s)	200, 239, 576, 704, 797
Hin1I	GRCGYC	1 cut(s)	122
Hin1II	CATG	2 cut(s)	244, 327
HincII	GTYRAC	2 cut(s)	628, 778
HindII	GTYRAC	2 cut(s)	628, 778
HinfI	GANTC	3 cut(s)	42, 292, 674
HphI	GGTGA	1 cut(s)	155
Hpy166II	GTNNAC	3 cut(s)	628, 697, 778
Hpy188I	TCNGA	1 cut(s)	41
Hpy188III	TCNNGA	3 cut(s)	224, 272, 518
Hpy8I	GTNNAC	3 cut(s)	628, 697, 778
Hpy99I	CGWCG	2 cut(s)	124, 127
HpyAV	CCTTC	4 cut(s)	361, 415, 515, 656
HpyCH4III	ACNGT	1 cut(s)	725
HpyCH4IV	ACGT	4 cut(s)	122, 249, 699, 780
HpyCH4V	TGCA	3 cut(s)	172, 263, 314
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 311, 663, 800
HpyF3I	CTNAG	2 cut(s)	30, 306
HpySE526I	ACGT	4 cut(s)	122, 249, 699, 780
Hsp92I	GRCGYC	1 cut(s)	122
Hsp92II	CATG	2 cut(s)	244, 327
KspI	CCGCGG	1 cut(s)	591
Kzo9I	GATC	2 cut(s)	33, 150
LmnI	GCTCC	2 cut(s)	97, 193
LweI	GCATC	1 cut(s)	392
MaeI	CTAG	1 cut(s)	380
MaeII	ACGT	4 cut(s)	122, 249, 699, 780
MalI	GATC	2 cut(s)	35, 152
MboI	GATC	2 cut(s)	33, 150
MboII	GAAGA	2 cut(s)	311, 643
MhlI	GDGCHC	1 cut(s)	78
MlsI	TGGCCA	1 cut(s)	704
MluCI	AATT	2 cut(s)	617, 713
MluNI	TGGCCA	1 cut(s)	704
MlyI	GAGTC	1 cut(s)	51
MnlI	CCTC	7 cut(s)	122, 137, 171, 177, 181, 432, 630
Mox20I	TGGCCA	1 cut(s)	704
MscI	TGGCCA	1 cut(s)	704
MseI	TTAA	1 cut(s)	471
Msp20I	TGGCCA	1 cut(s)	704
MspA1I	CMGCKG	1 cut(s)	590
MspR9I	CCNGG	1 cut(s)	236
MvaI	CCWGG	1 cut(s)	236
MvnI	CGCG	2 cut(s)	225, 590
MwoI	GCNNNNNNNGC	4 cut(s)	65, 311, 663, 800
NcoI	CCATGG	2 cut(s)	240, 323
NdeII	GATC	2 cut(s)	33, 150
NlaIII	CATG	2 cut(s)	244, 327
NlaIV	GGNNCC	2 cut(s)	99, 390
NmeAIII	GCCGAG	1 cut(s)	57
NruI	TCGCGA	1 cut(s)	225
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PfeI	GAWTC	2 cut(s)	292, 674
PflFI	GACNNNGTC	1 cut(s)	124
PflMI	CCANNNNNTGG	1 cut(s)	241
PkrI	GCNGC	2 cut(s)	61, 796
Ple19I	CGATCG	1 cut(s)	153
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
Ppu21I	YACGTR	1 cut(s)	700
Psp124BI	GAGCTC	1 cut(s)	78
Psp6I	CCWGG	1 cut(s)	234
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	2 cut(s)	99, 390
PspPI	GGNCC	2 cut(s)	327, 560
PstI	CTGCAG	2 cut(s)	174, 316
PstNI	CAGNNNCTG	1 cut(s)	398
PsyI	GACNNNGTC	1 cut(s)	124
PvuI	CGATCG	1 cut(s)	153
RruI	TCGCGA	1 cut(s)	225
RsaI	GTAC	4 cut(s)	544, 615, 727, 783
RsaNI	GTAC	4 cut(s)	543, 614, 726, 782
SacI	GAGCTC	1 cut(s)	78
SacII	CCGCGG	1 cut(s)	591
SaqAI	TTAA	1 cut(s)	471
SatI	GCNGC	2 cut(s)	60, 795
Sau3AI	GATC	2 cut(s)	33, 150
Sau96I	GGNCC	2 cut(s)	327, 560
SchI	GAGTC	1 cut(s)	51
ScrFI	CCNGG	1 cut(s)	236
SduI	GDGCHC	1 cut(s)	78
SfaNI	GCATC	1 cut(s)	392
SfcI	CTRYAG	2 cut(s)	170, 312
Sfr303I	CCGCGG	1 cut(s)	591
SgrBI	CCGCGG	1 cut(s)	591
SinI	GGWCC	2 cut(s)	327, 560
Sse9I	AATT	2 cut(s)	617, 713
SsiI	CCGC	4 cut(s)	60, 588, 590, 794
SspMI	CTAG	1 cut(s)	380
SstI	GAGCTC	1 cut(s)	78
StyD4I	CCNGG	1 cut(s)	234
StyI	CCWWGG	4 cut(s)	93, 240, 323, 456
TaaI	ACNGT	1 cut(s)	725
TaiI	ACGT	4 cut(s)	125, 252, 702, 783
TaqI	TCGA	1 cut(s)	153
TasI	AATT	2 cut(s)	617, 713
TatI	WGTACW	1 cut(s)	613
TauI	GCSGC	2 cut(s)	62, 797
TfiI	GAWTC	2 cut(s)	292, 674
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TspGWI	ACGGA	2 cut(s)	156, 649
Tth111I	GACNNNGTC	1 cut(s)	124
Van91I	CCANNNNNTGG	1 cut(s)	241
VpaK11BI	GGWCC	2 cut(s)	327, 560
XmiI	GTMKAC	1 cut(s)	696
XspI	CTAG	1 cut(s)	380
ZraI	GACGTC	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.