Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002365

Physical Location & Seq

Genomic Coordinates Forward (+)

25671285 .. 25672909

Gene Structure 1625 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG217600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGAGGTGGAGGCGTGGAGCTGCTGTCATCATATCCAAGAAAGCTCGCGATGTTCCTCAGGCCAAGGCCATGGATTACGTTGGTGGTTATGCACTTGCTCTTGATATGACTGACAGAGAGATTCAAGCTACTGCTAAGGAAATCAGAGCATCATCTTCTTCTTCCTCTGTTATTCCTTTCTGCCTAATCTCTGCCATTTTTAACAGACCCAAACATCTTCTTCGCCTTAAGCTTCTTAACCAGCCACCCCCTGAATCCGCCCCTGCCGGCGAAGACGCTCGACGCCAAGGCCCAGCGGCGATTCGGACTCCGATCGACAAGGCCCAGCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016787 GO:0016822 GO:0016823 GO:0018773 GO:0034545 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914

KEGG Pathways

Metabolic & Signaling

ko00350 ko01100 ko01120 map00350 map01100 map01120

Pfam Domains

Protein Families

FAA_hydrolase

Protein Analysis

110

Amino Acids

12.02

Weight (kDa)

10.27

Isoelectric Point (pI)

61.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAA_hydrolase	PF01557	8 - 73	9.2e-11	Fumarylacetoacetate (FAA) hydrolase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16700 AT3G16700 AT3G16700 AT3G16700 AT4G15940
fragaria_vesca	FvH4_4g18580 FvH4_4g18580
malus_domestica	MD04G1020300.v1.1
prunus_persica	Prupe.1G124800_v2.0.a1 Prupe.1G125100_v2.0.a1
pyrus_communis	pycom10g01710 pycom10g01730 pycom16g13990
rosa_chinensis	RchiOBHm_Chr0c32g0501491 RchiOBHm_Chr4g0423181 RchiOBHm_Chr4g0423191
rosa_laevigata	RLG00000007578 RLG00000033195
rosa_multiflora	Rmu_sc0000580.1_g000006 Rmu_sc0003368.1_g000036 Rmu_sc0007269.1_g000013 Rmu_sc0007782.1_g000002 Rmu_sc0008829.1_g000004
rosa_roxburghii	Rroxscaffold_5G00365340 Rroxscaffold_5G00365370
rosa_rugosa	Rorug02G0398700 Rorug04G0185000 Rorug04G0185100
rosa_samantha	Rh2AG299600 Rh4AG244500 Rh4AG247800 Rh4BG249700 Rh4CG258800 Rh4DG244500 Rh5AG208600 Rh5AG217600 Rh5AG294800 Rh5BG129400 Rh5BG217400 Rh5DG211400 Rh6AG307700
rosa_wichuraiana	Rw4G021060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	48
AciI	CCGC	2 cut(s)	258, 296
AcyI	GRCGYC	1 cut(s)	283
AflII	CTTAAG	1 cut(s)	227
AgsI	TTSAA	1 cut(s)	125
AluBI	AGCT	4 cut(s)	20, 44, 128, 232
AluI	AGCT	4 cut(s)	20, 44, 128, 232
AoxI	GGCC	4 cut(s)	60, 66, 289, 321
ApeKI	GCWGC	1 cut(s)	20
AspS9I	GGNCC	2 cut(s)	290, 322
AxyI	CCTNAGG	1 cut(s)	57
BbsI	GAAGAC	1 cut(s)	279
BbvI	GCAGC	1 cut(s)	7
BfrI	CTTAAG	1 cut(s)	227
BisI	GCNGC	2 cut(s)	21, 297
BlsI	GCNGC	2 cut(s)	22, 298
BmgT120I	GGNCC	2 cut(s)	290, 322
BmsI	GCATC	1 cut(s)	158
BpiI	GAAGAC	1 cut(s)	279
Bpu10I	CCTNAGC	1 cut(s)	135
BsaHI	GRCGYC	1 cut(s)	283
BsaJI	CCNNGG	3 cut(s)	63, 69, 286
BsaXI	ACNNNNNCTCC	2 cut(s)	9, 39
Bse118I	RCCGGY	1 cut(s)	266
Bse21I	CCTNAGG	1 cut(s)	57
BseDI	CCNNGG	3 cut(s)	63, 69, 286
BseMII	CTCAG	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	7
BseYI	CCCAGC	2 cut(s)	292, 324
Bsh1236I	CGCG	1 cut(s)	48
Bsh1285I	CGRYCG	1 cut(s)	315
BshFI	GGCC	4 cut(s)	62, 68, 291, 323
BsiEI	CGRYCG	1 cut(s)	315
BsiSI	CCGG	1 cut(s)	267
BsnI	GGCC	4 cut(s)	62, 68, 291, 323
Bsp143I	GATC	1 cut(s)	312
Bsp19I	CCATGG	1 cut(s)	69
Bsp68I	TCGCGA	1 cut(s)	48
BspACI	CCGC	2 cut(s)	258, 296
BspANI	GGCC	4 cut(s)	62, 68, 291, 323
BspCNI	CTCAG	1 cut(s)	70
BspFNI	CGCG	1 cut(s)	48
BspTI	CTTAAG	1 cut(s)	227
BsrFI	RCCGGY	1 cut(s)	266
BssAI	RCCGGY	1 cut(s)	266
BssECI	CCNNGG	3 cut(s)	63, 69, 286
BssMI	GATC	1 cut(s)	312
BssNI	GRCGYC	1 cut(s)	283
BssT1I	CCWWGG	3 cut(s)	63, 69, 286
BstACI	GRCGYC	1 cut(s)	283
BstAFI	CTTAAG	1 cut(s)	227
BstC8I	GCNNGC	2 cut(s)	46, 268
BstDEI	CTNAG	2 cut(s)	57, 135
BstDSI	CCRYGG	1 cut(s)	69
BstFNI	CGCG	1 cut(s)	48
BstKTI	GATC	1 cut(s)	315
BstMBI	GATC	1 cut(s)	312
BstMCI	CGRYCG	1 cut(s)	315
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	7
BstV2I	GAAGAC	1 cut(s)	279
BstXI	CCANNNNNNTGG	1 cut(s)	70
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	4 cut(s)	62, 68, 291, 323
BtgI	CCRYGG	1 cut(s)	69
BtgZI	GCGATG	1 cut(s)	63
BtuMI	TCGCGA	1 cut(s)	48
Cac8I	GCNNGC	2 cut(s)	46, 268
Cfr10I	RCCGGY	1 cut(s)	266
Cfr13I	GGNCC	2 cut(s)	290, 322
CseI	GACGC	2 cut(s)	284, 291
CviAII	CATG	1 cut(s)	70
DdeI	CTNAG	2 cut(s)	57, 135
DpnI	GATC	1 cut(s)	314
DpnII	GATC	1 cut(s)	312
EciI	GGCGGA	1 cut(s)	247
Eco130I	CCWWGG	3 cut(s)	63, 69, 286
Eco81I	CCTNAGG	1 cut(s)	57
EcoT14I	CCWWGG	3 cut(s)	63, 69, 286
ErhI	CCWWGG	3 cut(s)	63, 69, 286
FaeI	CATG	1 cut(s)	73
FaiI	YATR	4 cut(s)	32, 71, 90, 107
FatI	CATG	1 cut(s)	69
Fnu4HI	GCNGC	2 cut(s)	21, 297
Fsp4HI	GCNGC	2 cut(s)	21, 297
GluI	GCNGC	2 cut(s)	21, 297
GsaI	CCCAGC	2 cut(s)	296, 328
HaeIII	GGCC	4 cut(s)	62, 68, 291, 323
HapII	CCGG	1 cut(s)	267
HgaI	GACGC	2 cut(s)	284, 291
Hin1I	GRCGYC	1 cut(s)	283
Hin1II	CATG	1 cut(s)	73
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	4 cut(s)	121, 254, 301, 307
HpaII	CCGG	1 cut(s)	267
Hpy188I	TCNGA	3 cut(s)	146, 306, 312
Hpy188III	TCNNGA	2 cut(s)	47, 101
Hpy99I	CGWCG	1 cut(s)	285
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	1 cut(s)	92
HpyF3I	CTNAG	2 cut(s)	57, 135
HpySE526I	ACGT	1 cut(s)	78
Hsp92I	GRCGYC	1 cut(s)	283
Hsp92II	CATG	1 cut(s)	73
KroI	GCCGGC	1 cut(s)	266
KroNI	GCCGGC	1 cut(s)	268
Kzo9I	GATC	1 cut(s)	312
LmnI	GCTCC	1 cut(s)	17
LpnPI	CCDG	6 cut(s)	44, 254, 264, 276, 280, 306
Lsp1109I	GCAGC	1 cut(s)	7
LweI	GCATC	1 cut(s)	158
MaeII	ACGT	1 cut(s)	78
MalI	GATC	1 cut(s)	314
MboI	GATC	1 cut(s)	312
MboII	GAAGA	6 cut(s)	147, 150, 153, 209, 212, 284
MlyI	GAGTC	1 cut(s)	301
MnlI	CCTC	3 cut(s)	3, 66, 175
MroNI	GCCGGC	1 cut(s)	266
MseI	TTAA	3 cut(s)	201, 228, 237
MspA1I	CMGCKG	1 cut(s)	296
MspCI	CTTAAG	1 cut(s)	227
MspI	CCGG	1 cut(s)	267
MvnI	CGCG	1 cut(s)	48
NaeI	GCCGGC	1 cut(s)	268
NcoI	CCATGG	1 cut(s)	69
NdeII	GATC	1 cut(s)	312
NgoMIV	GCCGGC	1 cut(s)	266
NlaIII	CATG	1 cut(s)	73
NruI	TCGCGA	1 cut(s)	48
PdiI	GCCGGC	1 cut(s)	268
PfeI	GAWTC	3 cut(s)	121, 254, 301
PkrI	GCNGC	2 cut(s)	22, 298
Ple19I	CGATCG	1 cut(s)	315
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
PspFI	CCCAGC	2 cut(s)	292, 324
PspPI	GGNCC	2 cut(s)	290, 322
PvuI	CGATCG	1 cut(s)	315
RruI	TCGCGA	1 cut(s)	48
SaqAI	TTAA	3 cut(s)	201, 228, 237
SatI	GCNGC	2 cut(s)	21, 297
Sau3AI	GATC	1 cut(s)	312
Sau96I	GGNCC	2 cut(s)	290, 322
SchI	GAGTC	1 cut(s)	301
SetI	ASST	6 cut(s)	8, 22, 46, 81, 130, 234
SfaNI	GCATC	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
SsiI	CCGC	2 cut(s)	258, 296
StyI	CCWWGG	3 cut(s)	63, 69, 286
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	2 cut(s)	280, 315
TauI	GCSGC	1 cut(s)	299
TfiI	GAWTC	3 cut(s)	121, 254, 301
Tru1I	TTAA	3 cut(s)	201, 228, 237
Tru9I	TTAA	3 cut(s)	201, 228, 237
TseI	GCWGC	1 cut(s)	20
Vha464I	CTTAAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.