Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008829.1

Orthogroup ID

OG0002365

Physical Location & Seq

Genomic Coordinates Forward (+)

14779 .. 16563

Gene Structure 1785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008829.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

atggcaagcaggcttttacaagtaggcactaagatcatcggagtcggcagaaactacgccgcccacgccaaagagctgggcaacgccgtccccaaggagcctgtgcttttcctcaaaccgacgtcgtcttacttggaaaacggaggcacgatcgaaatccctcaccctctgcagtcattggactatgaggtggagctggccgtcatcatatccaagaaagctcgcgatgttccccaggccaaggccatggattacgttggtggttatgcacttgctcttgatatgactgccagagagattcaagctactgctaagtctgcaggtcttccatggaccatagcaaaagggcaggacaccttcacaccaatcagttctgtgttgtccctagcaacggtgccagaccctgacgatttggaactttggttgaaggtagatggagaagtgaggcaaaaaggttcaaccaaggatatgatatttaaaatcccatttctcatcagccacataagttccattatgacacttctggaaggagatgtaatactaacaggtactcccaaaggtgttggtccagtaaaagcaggccaaaagataaccgcgggaataacaaaccttgtggatgtacaattcaatgttgacaaacggaggcaaggaagttcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016787 GO:0016822 GO:0016823 GO:0018773 GO:0034545 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914

KEGG Pathways

Metabolic & Signaling

ko00350 ko01100 ko01120 map00350 map01100 map01120

Pfam Domains

Protein Families

FAA_hydrolase

Protein Analysis

219

Amino Acids

23.51

Weight (kDa)

7.87

Isoelectric Point (pI)

29.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16700 AT3G16700 AT3G16700 AT3G16700 AT4G15940
fragaria_vesca	FvH4_4g18580 FvH4_4g18580
malus_domestica	MD04G1020300.v1.1
prunus_persica	Prupe.1G124800_v2.0.a1 Prupe.1G125100_v2.0.a1
pyrus_communis	pycom10g01710 pycom10g01730 pycom16g13990
rosa_chinensis	RchiOBHm_Chr0c32g0501491 RchiOBHm_Chr4g0423181 RchiOBHm_Chr4g0423191
rosa_laevigata	RLG00000007578 RLG00000033195
rosa_multiflora	Rmu_sc0000580.1_g000006 Rmu_sc0003368.1_g000036 Rmu_sc0007269.1_g000013 Rmu_sc0007782.1_g000002 Rmu_sc0008829.1_g000004
rosa_roxburghii	Rroxscaffold_5G00365340 Rroxscaffold_5G00365370
rosa_rugosa	Rorug02G0398700 Rorug04G0185000 Rorug04G0185100
rosa_samantha	Rh2AG299600 Rh4AG244500 Rh4AG247800 Rh4BG249700 Rh4CG258800 Rh4DG244500 Rh5AG208600 Rh5AG217600 Rh5AG294800 Rh5BG129400 Rh5BG217400 Rh5DG211400 Rh6AG307700
rosa_wichuraiana	Rw4G021060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	125
Acc36I	ACCTGC	1 cut(s)	311
AccB1I	GGYRCC	1 cut(s)	394
AccII	CGCG	2 cut(s)	225, 596
AciI	CCGC	3 cut(s)	60, 594, 596
AcoI	YGGCCR	1 cut(s)	198
AcyI	GRCGYC	1 cut(s)	122
AfaI	GTAC	2 cut(s)	550, 621
AfiI	CCNNNNNNNGG	2 cut(s)	241, 391
AgsI	TTSAA	4 cut(s)	302, 427, 459, 628
AjnI	CCWGG	1 cut(s)	234
AluBI	AGCT	4 cut(s)	76, 196, 221, 305
AluI	AGCT	4 cut(s)	76, 196, 221, 305
AlwNI	CAGNNNCTG	1 cut(s)	404
AoxI	GGCC	4 cut(s)	198, 237, 243, 580
AspS9I	GGNCC	2 cut(s)	333, 566
AsuHPI	GGTGA	1 cut(s)	155
AvaII	GGWCC	2 cut(s)	333, 566
BanI	GGYRCC	1 cut(s)	394
BbsI	GAAGAC	1 cut(s)	317
BccI	CCATC	1 cut(s)	428
BceAI	ACGGC	2 cut(s)	71, 185
BciT130I	CCWGG	1 cut(s)	236
BfaI	CTAG	1 cut(s)	386
BfmI	CTRYAG	2 cut(s)	170, 318
BfuAI	ACCTGC	1 cut(s)	311
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
Bme1390I	CCNGG	1 cut(s)	236
Bme18I	GGWCC	2 cut(s)	333, 566
BmgT120I	GGNCC	2 cut(s)	333, 566
BmiI	GGNNCC	2 cut(s)	99, 396
BmrFI	CCNGG	1 cut(s)	236
BpiI	GAAGAC	1 cut(s)	317
BsaBI	GATNNNNATC	1 cut(s)	155
BsaHI	GRCGYC	1 cut(s)	122
BsaJI	CCNNGG	7 cut(s)	93, 234, 240, 246, 329, 462, 594
BsaXI	ACNNNNNCTCC	2 cut(s)	535, 565
Bsc4I	CCNNNNNNNGG	2 cut(s)	241, 391
Bse1I	ACTGG	1 cut(s)	569
Bse8I	GATNNNNATC	1 cut(s)	155
BseBI	CCWGG	1 cut(s)	236
BseDI	CCNNGG	7 cut(s)	93, 234, 240, 246, 329, 462, 594
BseGI	GGATG	1 cut(s)	622
BseJI	GATNNNNATC	1 cut(s)	155
BseLI	CCNNNNNNNGG	2 cut(s)	241, 391
BseNI	ACTGG	1 cut(s)	569
BseYI	CCCAGC	1 cut(s)	76
Bsh1236I	CGCG	2 cut(s)	225, 596
Bsh1285I	CGRYCG	1 cut(s)	153
BshFI	GGCC	4 cut(s)	200, 239, 245, 582
BshNI	GGYRCC	1 cut(s)	394
BsiEI	CGRYCG	1 cut(s)	153
BslFI	GGGAC	2 cut(s)	74, 367
BslI	CCNNNNNNNGG	2 cut(s)	241, 391
BsmFI	GGGAC	2 cut(s)	74, 367
BsnI	GGCC	4 cut(s)	200, 239, 245, 582
Bsp1407I	TGTACA	1 cut(s)	619
Bsp143I	GATC	2 cut(s)	33, 150
Bsp19I	CCATGG	2 cut(s)	246, 329
Bsp68I	TCGCGA	1 cut(s)	225
BspACI	CCGC	3 cut(s)	60, 594, 596
BspANI	GGCC	4 cut(s)	200, 239, 245, 582
BspFNI	CGCG	2 cut(s)	225, 596
BspLI	GGNNCC	2 cut(s)	99, 396
BspMAI	CTGCAG	2 cut(s)	174, 322
BspMI	ACCTGC	1 cut(s)	311
BspT107I	GGYRCC	1 cut(s)	394
BsrGI	TGTACA	1 cut(s)	619
BsrI	ACTGG	1 cut(s)	569
BssECI	CCNNGG	7 cut(s)	93, 234, 240, 246, 329, 462, 594
BssMI	GATC	2 cut(s)	33, 150
BssNI	GRCGYC	1 cut(s)	122
BssT1I	CCWWGG	5 cut(s)	93, 240, 246, 329, 462
Bst2UI	CCWGG	1 cut(s)	236
Bst4CI	ACNGT	1 cut(s)	394
BstACI	GRCGYC	1 cut(s)	122
BstAUI	TGTACA	1 cut(s)	619
BstC8I	GCNNGC	5 cut(s)	7, 11, 198, 223, 580
BstDEI	CTNAG	2 cut(s)	30, 312
BstDSI	CCRYGG	3 cut(s)	246, 329, 594
BstF5I	GGATG	1 cut(s)	622
BstFNI	CGCG	2 cut(s)	225, 596
BstKTI	GATC	2 cut(s)	36, 153
BstMBI	GATC	2 cut(s)	33, 150
BstMCI	CGRYCG	1 cut(s)	153
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 317
BstNI	CCWGG	1 cut(s)	236
BstSCI	CCNGG	1 cut(s)	234
BstSFI	CTRYAG	2 cut(s)	170, 318
BstUI	CGCG	2 cut(s)	225, 596
BstV2I	GAAGAC	1 cut(s)	317
BstXI	CCANNNNNNTGG	2 cut(s)	76, 247
BsuRI	GGCC	4 cut(s)	200, 239, 245, 582
BtgI	CCRYGG	3 cut(s)	246, 329, 594
BtgZI	GCGATG	1 cut(s)	240
BtsCI	GGATG	1 cut(s)	622
BtuMI	TCGCGA	1 cut(s)	225
BveI	ACCTGC	1 cut(s)	311
Cac8I	GCNNGC	5 cut(s)	7, 11, 198, 223, 580
CaiI	CAGNNNCTG	1 cut(s)	404
Cfr13I	GGNCC	2 cut(s)	333, 566
Cfr42I	CCGCGG	1 cut(s)	597
Csp6I	GTAC	2 cut(s)	549, 620
CspCI	CAANNNNNGTGG	2 cut(s)	594, 629
CviAII	CATG	2 cut(s)	247, 330
CviQI	GTAC	2 cut(s)	549, 620
DdeI	CTNAG	2 cut(s)	30, 312
DpnI	GATC	2 cut(s)	35, 152
DpnII	GATC	2 cut(s)	33, 150
DraI	TTTAAA	1 cut(s)	478
EaeI	YGGCCR	1 cut(s)	198
Eco130I	CCWWGG	5 cut(s)	93, 240, 246, 329, 462
Eco47I	GGWCC	2 cut(s)	333, 566
EcoRII	CCWGG	1 cut(s)	234
EcoT14I	CCWWGG	5 cut(s)	93, 240, 246, 329, 462
ErhI	CCWWGG	5 cut(s)	93, 240, 246, 329, 462
FaeI	CATG	2 cut(s)	250, 333
FaqI	GGGAC	2 cut(s)	74, 367
FatI	CATG	2 cut(s)	246, 329
FauI	CCCGC	1 cut(s)	589
Fnu4HI	GCNGC	1 cut(s)	60
FokI	GGATG	1 cut(s)	629
Fsp4HI	GCNGC	1 cut(s)	60
FspBI	CTAG	1 cut(s)	386
GluI	GCNGC	1 cut(s)	60
GsaI	CCCAGC	1 cut(s)	80
HaeIII	GGCC	4 cut(s)	200, 239, 245, 582
Hin1I	GRCGYC	1 cut(s)	122
Hin1II	CATG	2 cut(s)	250, 333
HincII	GTYRAC	1 cut(s)	634
HindII	GTYRAC	1 cut(s)	634
HinfI	GANTC	2 cut(s)	42, 298
HphI	GGTGA	1 cut(s)	155
Hpy166II	GTNNAC	1 cut(s)	634
Hpy188I	TCNGA	1 cut(s)	41
Hpy188III	TCNNGA	4 cut(s)	224, 278, 524, 657
Hpy8I	GTNNAC	1 cut(s)	634
Hpy99I	CGWCG	2 cut(s)	124, 127
HpyAV	CCTTC	3 cut(s)	367, 421, 521
HpyCH4III	ACNGT	1 cut(s)	394
HpyCH4IV	ACGT	2 cut(s)	122, 255
HpyCH4V	TGCA	3 cut(s)	172, 269, 320
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 317
HpyF3I	CTNAG	2 cut(s)	30, 312
HpySE526I	ACGT	2 cut(s)	122, 255
Hsp92I	GRCGYC	1 cut(s)	122
Hsp92II	CATG	2 cut(s)	250, 333
KspI	CCGCGG	1 cut(s)	597
Kzo9I	GATC	2 cut(s)	33, 150
LmnI	GCTCC	2 cut(s)	97, 193
MaeI	CTAG	1 cut(s)	386
MaeII	ACGT	2 cut(s)	122, 255
MalI	GATC	2 cut(s)	35, 152
MboI	GATC	2 cut(s)	33, 150
MboII	GAAGA	1 cut(s)	317
MluCI	AATT	1 cut(s)	623
MlyI	GAGTC	1 cut(s)	51
MnlI	CCTC	7 cut(s)	122, 137, 171, 177, 181, 438, 636
MseI	TTAA	1 cut(s)	477
MspA1I	CMGCKG	1 cut(s)	596
MspR9I	CCNGG	1 cut(s)	236
MvaI	CCWGG	1 cut(s)	236
MvnI	CGCG	2 cut(s)	225, 596
MwoI	GCNNNNNNNGC	2 cut(s)	65, 317
NcoI	CCATGG	2 cut(s)	246, 329
NdeII	GATC	2 cut(s)	33, 150
NlaIII	CATG	2 cut(s)	250, 333
NlaIV	GGNNCC	2 cut(s)	99, 396
NruI	TCGCGA	1 cut(s)	225
PfeI	GAWTC	1 cut(s)	298
PflFI	GACNNNGTC	1 cut(s)	124
PkrI	GCNGC	1 cut(s)	61
Ple19I	CGATCG	1 cut(s)	153
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
Psp6I	CCWGG	1 cut(s)	234
PspFI	CCCAGC	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	234
PspN4I	GGNNCC	2 cut(s)	99, 396
PspPI	GGNCC	2 cut(s)	333, 566
PstI	CTGCAG	2 cut(s)	174, 322
PstNI	CAGNNNCTG	1 cut(s)	404
PsyI	GACNNNGTC	1 cut(s)	124
PvuI	CGATCG	1 cut(s)	153
RruI	TCGCGA	1 cut(s)	225
RsaI	GTAC	2 cut(s)	550, 621
RsaNI	GTAC	2 cut(s)	549, 620
SacII	CCGCGG	1 cut(s)	597
SaqAI	TTAA	1 cut(s)	477
SatI	GCNGC	1 cut(s)	60
Sau3AI	GATC	2 cut(s)	33, 150
Sau96I	GGNCC	2 cut(s)	333, 566
SchI	GAGTC	1 cut(s)	51
ScrFI	CCNGG	1 cut(s)	236
SfcI	CTRYAG	2 cut(s)	170, 318
Sfr303I	CCGCGG	1 cut(s)	597
SgrBI	CCGCGG	1 cut(s)	597
SinI	GGWCC	2 cut(s)	333, 566
Sse9I	AATT	1 cut(s)	623
SsiI	CCGC	3 cut(s)	60, 594, 596
SspMI	CTAG	1 cut(s)	386
StyD4I	CCNGG	1 cut(s)	234
StyI	CCWWGG	5 cut(s)	93, 240, 246, 329, 462
TaaI	ACNGT	1 cut(s)	394
TaiI	ACGT	2 cut(s)	125, 258
TaqI	TCGA	1 cut(s)	153
TasI	AATT	1 cut(s)	623
TatI	WGTACW	1 cut(s)	619
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	1 cut(s)	298
Tru1I	TTAA	1 cut(s)	477
Tru9I	TTAA	1 cut(s)	477
TspGWI	ACGGA	2 cut(s)	156, 655
Tth111I	GACNNNGTC	1 cut(s)	124
VpaK11BI	GGWCC	2 cut(s)	333, 566
XspI	CTAG	1 cut(s)	386
ZraI	GACGTC	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.