Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002365

Physical Location & Seq

Genomic Coordinates Reverse (-)

50883308 .. 50889960

Gene Structure 6653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0398700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3345 bp

ATGAGTACGCCAAGGCAGCTTGTGAATGTCCGTGACCTTGTTGAGGAAGCCAAGAAGCGAATTGTCTTCCTCGCCGTTTGCGTCGTTGGCCTCTCATATCTCATGTCCTTGACAAGCTCCAATGTTTTGGTCAACTTGCCTGCTGCTGCTTCCTTGATTGTAATCCTTCGCTACTTATCTCTGGATTATGAAATGCGAAGAAAAGCCGCAGCATACAACAATAAACCACCCCCAGCAAATAATGCTTTCCAAACCAAACCAGTTCCATTGCCTAACACTGTTGGAAAGTCTGAGTGGAGAAGAAAAGTTAATTCTCCTGTTGTTGAGAAAGCTATAGAACACTTTACCAGGCATCTAGTTTCTGAGTTTGTGACAGATCTATGGTATTCTCGTCTAACACCAGATAAACAAGGTCCAGAGGAACTGGTGTGCATTATCAATAGTGTCCTTGGGGAACTTTCAGCACGCGTGAGGAATATAAATCTGATTGATCTTCTCACAAGGGACCTTATCAATCTCATATGCTCTCACTTGGAACTTTTTCGCATAACACAAGCAAAGATTCCAAAGCAACAATCAGAATTGATGACAATTGAAAAACGAGATATGGAATTAAGACTCGTCTTGGATGCTGAAAACAAATTGCACCCTGCTCTATTTTCTGCTGAAGCTGAGCACAAGGTTTTGCAGCATCTGATGGATGGCCTTATTTCTCTCACATTCAAGCGTGAAGATCTGCAGTGCACTTTGTTCCGTTATATTGTCAGAGAGCTTCTTGCTTGTGCAGTAATGCGTCCTGTCCTAAACTTGGCTAGTCCAAGGTTTATTAATGAAAGAATTGAACAGTTGGTCATAAAGATGAACGAATCTAAAGGTGTTACCACGGGACAAAAGGAATTTCTATCCAAACAAGAGGAGTCGTCGAGTATTTCATCCGATCACTTCTCTAGGTACTTAGACCCTTCTGTTACAGGTGTTGAACTTGTGCAATTGAAAAATGGACAGTCCAGAACTTCTGCAGACAGACATGCAGCAGAAAATGTGAATGGATCAAAAGACCCATTGCTTTCGATTGATACTCCATCTTCTCGTCCATGGAACTCATTGCGAATGAACTCCCAAAGTATCAATGAAAGGGTTGTAGAACAGCATAACTCAGGAGGAGAATGGGGAGACATGTTAGATCTGGTATCTCGCAGAAAGACTCAAGCCCTTGCTCCTGAAAATTTTGAAAATATGTGGGCAAAAGGGAGAAATTACAGAAAGAAGGAAGGTGAAAATTCGATATCGGCGCAAGTCCCAAAGGGTTCTTCCGGAGGGAAGTCGATTGCAGGGGATCATACTAGGGAAAAATCTAATCCCACCGATAAGCAAAATGTATCTAAGCTCAATCTGACCTCTCAGTCAGGATCTACCAATCAGGTTAAAGTAAACAACTCTTTCCGCCCGGAAGGTCAAAACATACCGAATCGCTCTCCAGGTCCTTTGTATGAGGAAGATGATCAACACAGTCCTTTGAGGTTGGTGGAGACCGACTCAGGAAGCAGTACTTCTTATACTTCTGAAGATCAAGAAAGTGACGGTGCAACAGGTCTTGATTCTCCTGGAACTAAAGTTTGGGATGGTAGAAGTAATAGAGGTATGACTGTATCTCACATCCATCACCCACTTGAAAATTCTGAACGTCATATTGCAAAAAAGACTGGTAAAGGGAATCAGCGCTTTCAAAGGTCTAGGCTGAAAAAATCTAAACCAAGCAATAAGAAGTTGCCTGTTTGGCAAGAGGTTGAGAGAACAAGCTTCTTGTCTGGAGATGGGCAGGACATACTCAAATCTTTAAAAGGGCATGCCCATATTGAGGACTCCAGCGATGATTCTGAAAATGAAAATTTTGGTAGAATTAACAGTGGAGCAGCCACTTCTTCATCTGCACCATCTGTATCTGATAATTCCCTGAAAAATTCTTTGGCAGTGGATTCTTTTTTCAAGTTGAAATGTGAGGTATTGGGTGCAAATATTGTCAAGAGTGACTGTAAAACATTTGCTGTATATTCCATATCTGTGACGGATGTAAATAACAATAGTTGGTCAATCAAAAGAAGATTTCGCCATTTTGAGGAGCTACATCGGCGTTTAAAAGAGTTTCCTCAGTATAACCTTCATTTGCCACCAAAGCATTTTCTGTCAAGTGGTTTGGATTTACTTGTTGTTCAAGAAAGATGTAAATTGCTTGACAAATACTTAAAGGAGCTTATGCAGCTTCCAACAATCTCAGGGTCCATTGAAGTTTGGGACTTCTTAAGTGTCGACTCCCAGACTTATTTATTTACAAATTCATTTTCTATAATCGAAACACTGTCAGTTGGCCTAGATGATAAGCCATCTGAAAAGAGTAAAAAGGCTTTAAATTTCGGTGAGCCTGTGATTGATCCATTTTCCTTGAAGAGGGAACAAATTGGCATTGGAATTAAGGATTCTACTTTACAAGTGAAGAATAATGCTGTTGGAGATGGGCTAAGATTAAATGCAAAAGGCTCTTCTTCTCCGGTCCAAAATCCTGGCAAAGATTTTGGAAAGCCACTCAATACTCCTGGCACATGTTCAAGCACTGGAGGACAAAAACAGGCATCTTCTCTCATGAACTCAGGAAAGACTTCAAAAGGAAGGGAGGAACAGGAATCTGAATTGTTTCTTGATGCTTCTACAGACCCTACCCTTCCTATGGAGTGGGTGCCTCCAAATGTAAGTGTTCCGATATTAGATTTGGTAGATGTCATTTTTCAGCTCCAAGATGGTGGATGGATCAGGCGCAAGGCTTTTTGGGTGGCCAAACAAATACTACAACTAGGGATGGGTGACGCCTTTGATGACTGGTTAATTGAGAAAATCCAGCTTTTGCGTAAGGGATCGATTGTTGCTTCTGGGATTAAGCGAATTGAGCAGATACTCTGGCCTGATGGAATATTTATAAGCAAGCATCCAAAGCGACGACCGCAGCCATCTACAAATTTACCCCAAAATTCACCTCAGGGTCAGAGACCCATAGCAATATCATCCCCTAGACTCGATGAGCACCAGCAACAGGAAGCAGATCGACGTGCAAAGTTTGTTTATGAATTAATGATTGATAACGCACCAACTGCTATTGTCAGTCTTGTTGGTACCAAGGAGTATGACAAATGTGCCAAGGATCTCTATTACTTTCTTCAGTCATCTGTTTGCTTAAAGCAACTGGCTTTTGACCTTCTCGAGCTACTGCTTTCATCTGCATTTCCAGAGATGGAACATGTATTTAAGCAGGTGCATGAAGAAAAACATAGGTTTGGTGAGTTCAAAGCACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016787 GO:0016822 GO:0016823 GO:0018773 GO:0034545 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914

KEGG Pathways

Metabolic & Signaling

ko00350 ko01100 ko01120 map00350 map01100 map01120

Pfam Domains

Protein Families

FAA_hydrolase

Protein Analysis

1114

Amino Acids

124.94

Weight (kDa)

8.68

Isoelectric Point (pI)

48.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PXA	PF02194	105 - 283	1.1e-40	PXA domain
PX	PF00787	692 - 769	2.7e-13	PX domain
Nexin_C	PF08628	934 - 1072	7.3e-21	Sorting nexin C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16700 AT3G16700 AT3G16700 AT3G16700 AT4G15940
fragaria_vesca	FvH4_4g18580 FvH4_4g18580
malus_domestica	MD04G1020300.v1.1
prunus_persica	Prupe.1G124800_v2.0.a1 Prupe.1G125100_v2.0.a1
pyrus_communis	pycom10g01710 pycom10g01730 pycom16g13990
rosa_chinensis	RchiOBHm_Chr0c32g0501491 RchiOBHm_Chr4g0423181 RchiOBHm_Chr4g0423191
rosa_laevigata	RLG00000007578 RLG00000033195
rosa_multiflora	Rmu_sc0000580.1_g000006 Rmu_sc0003368.1_g000036 Rmu_sc0007269.1_g000013 Rmu_sc0007782.1_g000002 Rmu_sc0008829.1_g000004
rosa_roxburghii	Rroxscaffold_5G00365340 Rroxscaffold_5G00365370
rosa_rugosa	Rorug02G0398700 Rorug04G0185000 Rorug04G0185100
rosa_samantha	Rh2AG299600 Rh4AG244500 Rh4AG247800 Rh4BG249700 Rh4CG258800 Rh4DG244500 Rh5AG208600 Rh5AG217600 Rh5AG294800 Rh5BG129400 Rh5BG217400 Rh5DG211400 Rh6AG307700
rosa_wichuraiana	Rw4G021060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2969
AarI	CACCTGC	1 cut(s)	3289
AasI	GACNNNNNNGTC	1 cut(s)	1402
Acc36I	ACCTGC	1 cut(s)	3289
Acc65I	GGTACC	1 cut(s)	3161
AccB1I	GGYRCC	2 cut(s)	2731, 3161
AccI	GTMKAC	1 cut(s)	2307
AccII	CGCG	1 cut(s)	468
AccIII	TCCGGA	1 cut(s)	1313
AciI	CCGC	3 cut(s)	207, 1444, 2993
AclWI	GGATC	7 cut(s)	1057, 1344, 1417, 2423, 2810, 2914, 3198
AcoI	YGGCCR	1 cut(s)	2826
AcuI	CTGAAG	3 cut(s)	687, 1584, 3191
AcyI	GRCGYC	1 cut(s)	2859
AfaI	GTAC	4 cut(s)	7, 953, 1549, 3163
AfeI	AGCGCT	1 cut(s)	1721
AfiI	CCNNNNNNNGG	7 cut(s)	43, 808, 1858, 2116, 2445, 2722, 3082
AflII	CTTAAG	1 cut(s)	2299
AflIII	ACRYGT	4 cut(s)	466, 1176, 2597, 3286
AjiI	CACGTC	1 cut(s)	3098
AjnI	CCWGG	5 cut(s)	347, 1477, 1603, 2557, 2590
AjuI	GAANNNNNNNTTGG	6 cut(s)	1294, 1326, 1600, 1632, 1949, 1981
Alw21I	GWGCWC	3 cut(s)	678, 746, 3075
Alw26I	GTCTC	3 cut(s)	1167, 1523, 3031
Alw44I	GTGCAC	1 cut(s)	742
AlwI	GGATC	7 cut(s)	1057, 1344, 1417, 2423, 2810, 2914, 3198
AlwNI	CAGNNNCTG	1 cut(s)	694
Ama87I	CYCGRG	1 cut(s)	3248
Aor13HI	TCCGGA	1 cut(s)	1313
Aor51HI	AGCGCT	1 cut(s)	1721
AoxI	GGCC	5 cut(s)	88, 703, 2365, 2826, 2951
ApaLI	GTGCAC	1 cut(s)	742
ApeKI	GCWGC	9 cut(s)	16, 143, 146, 209, 688, 1031, 1913, 2257, 2995
AseI	ATTAAT	2 cut(s)	828, 3119
Asp700I	GAANNNNTTC	3 cut(s)	540, 2653, 2688
Asp718I	GGTACC	1 cut(s)	3161
AspLEI	GCGC	3 cut(s)	1294, 1722, 2811
AspS9I	GGNCC	5 cut(s)	413, 505, 1481, 2277, 2548
AsuC2I	CCSGG	1 cut(s)	1448
AsuHPI	GGTGA	6 cut(s)	1286, 1655, 2426, 2867, 3015, 3338
AvaI	CYCGRG	1 cut(s)	3248
AvaII	GGWCC	5 cut(s)	413, 505, 1481, 2277, 2548
AxyI	CCTNAGG	1 cut(s)	3027
BaeGI	GKGCMC	1 cut(s)	746
BalI	TGGCCA	1 cut(s)	2828
BanI	GGYRCC	2 cut(s)	2731, 3161
BbsI	GAAGAC	1 cut(s)	58
Bbv12I	GWGCWC	3 cut(s)	678, 746, 3075
BbvI	GCAGC	9 cut(s)	28, 130, 133, 221, 700, 1043, 1925, 2269, 3007
BceAI	ACGGC	1 cut(s)	59
BciT130I	CCWGG	5 cut(s)	349, 1479, 1605, 2559, 2592
BclI	TGATCA	1 cut(s)	1501
BcnI	CCSGG	1 cut(s)	1448
BcoDI	GTCTC	3 cut(s)	1167, 1523, 3031
BfaI	CTAG	8 cut(s)	356, 813, 948, 1344, 1734, 2369, 2846, 3060
BfmI	CTRYAG	4 cut(s)	333, 737, 1017, 2703
BfoI	RGCGCY	1 cut(s)	1723
BfrI	CTTAAG	1 cut(s)	2299
BfuAI	ACCTGC	1 cut(s)	3289
BglI	GCCNNNNNGGC	1 cut(s)	1777
BglII	AGATCT	3 cut(s)	376, 733, 1183
BlpI	GCTNAGC	1 cut(s)	672
BmcAI	AGTACT	1 cut(s)	1549
Bme1390I	CCNGG	6 cut(s)	349, 1448, 1479, 1605, 2559, 2592
Bme18I	GGWCC	5 cut(s)	413, 505, 1481, 2277, 2548
BmeT110I	CYCGRG	1 cut(s)	3248
BmgBI	CACGTC	1 cut(s)	3098
BmgT120I	GGNCC	5 cut(s)	413, 505, 1481, 2277, 2548
BmiI	GGNNCC	4 cut(s)	506, 2278, 2733, 3163
BmrFI	CCNGG	6 cut(s)	349, 1448, 1479, 1605, 2559, 2592
BmsI	GCATC	6 cut(s)	361, 619, 700, 2636, 2686, 2986
BpiI	GAAGAC	1 cut(s)	58
BplI	GAGNNNNNCTC	2 cut(s)	1520, 1552
BpmI	CTGGAG	4 cut(s)	1461, 1830, 1849, 2631
Bpu1102I	GCTNAGC	1 cut(s)	672
BpuEI	CTTGAG	1 cut(s)	1191
BpuMI	CCSGG	1 cut(s)	1448
Bsa29I	ATCGAT	1 cut(s)	2909
BsaBI	GATNNNNATC	1 cut(s)	161
BsaHI	GRCGYC	1 cut(s)	2859
BsaI	GGTCTC	2 cut(s)	1523, 3031
BsaJI	CCNNGG	7 cut(s)	11, 448, 818, 882, 1094, 3165, 3186
BsaWI	WCCGGW	2 cut(s)	1313, 2545
Bsc4I	CCNNNNNNNGG	7 cut(s)	43, 808, 1858, 2116, 2445, 2722, 3082
Bse1I	ACTGG	6 cut(s)	260, 429, 1708, 2614, 2876, 3237
Bse21I	CCTNAGG	1 cut(s)	3027
Bse3DI	GCAATG	3 cut(s)	266, 1061, 1103
Bse8I	GATNNNNATC	1 cut(s)	161
BseAI	TCCGGA	1 cut(s)	1313
BseBI	CCWGG	5 cut(s)	349, 1479, 1605, 2559, 2592
BseCI	ATCGAT	1 cut(s)	2909
BseDI	CCNNGG	7 cut(s)	11, 448, 818, 882, 1094, 3165, 3186
BseJI	GATNNNNATC	1 cut(s)	161
BseLI	CCNNNNNNNGG	7 cut(s)	43, 808, 1858, 2116, 2445, 2722, 3082
BseMI	GCAATG	3 cut(s)	266, 1061, 1103
BseNI	ACTGG	6 cut(s)	260, 429, 1708, 2614, 2876, 3237
BseRI	GAGGAG	3 cut(s)	929, 1176, 2132
BseSI	GKGCMC	1 cut(s)	746
BseXI	GCAGC	9 cut(s)	28, 130, 133, 221, 700, 1043, 1925, 2269, 3007
BseYI	CCCAGC	1 cut(s)	232
BsgI	GTGCAG	2 cut(s)	804, 1914
Bsh1236I	CGCG	1 cut(s)	468
Bsh1285I	CGRYCG	1 cut(s)	2993
BshFI	GGCC	5 cut(s)	90, 705, 2367, 2828, 2953
BshNI	GGYRCC	2 cut(s)	2731, 3161
BshVI	ATCGAT	1 cut(s)	2909
BsiEI	CGRYCG	1 cut(s)	2993
BsiHKAI	GWGCWC	3 cut(s)	678, 746, 3075
BsiHKCI	CYCGRG	1 cut(s)	3248
BsiSI	CCGG	3 cut(s)	1314, 1448, 2546
BslFI	GGGAC	4 cut(s)	518, 900, 1283, 2306
BslI	CCNNNNNNNGG	7 cut(s)	43, 808, 1858, 2116, 2445, 2722, 3082
BsmAI	GTCTC	3 cut(s)	1167, 1523, 3031
BsmFI	GGGAC	4 cut(s)	518, 900, 1283, 2306
BsnI	GGCC	5 cut(s)	90, 705, 2367, 2828, 2953
Bso31I	GGTCTC	2 cut(s)	1523, 3031
BsoBI	CYCGRG	1 cut(s)	3248
Bsp1286I	GDGCHC	3 cut(s)	678, 746, 3075
Bsp13I	TCCGGA	1 cut(s)	1313
Bsp1720I	GCTNAGC	1 cut(s)	672
Bsp19I	CCATGG	1 cut(s)	1094
BspACI	CCGC	3 cut(s)	207, 1444, 2993
BspANI	GGCC	5 cut(s)	90, 705, 2367, 2828, 2953
BspDI	ATCGAT	1 cut(s)	2909
BspEI	TCCGGA	1 cut(s)	1313
BspFNI	CGCG	1 cut(s)	468
BspHI	TCATGA	1 cut(s)	2637
BspLI	GGNNCC	4 cut(s)	506, 2278, 2733, 3163
BspMAI	CTGCAG	2 cut(s)	741, 1021
BspMI	ACCTGC	1 cut(s)	3289
BspPI	GGATC	7 cut(s)	1057, 1344, 1417, 2423, 2810, 2914, 3198
BspQI	GCTCTTC	1 cut(s)	2542
BspT107I	GGYRCC	2 cut(s)	2731, 3161
BspTI	CTTAAG	1 cut(s)	2299
BspTNI	GGTCTC	2 cut(s)	1523, 3031
BsrDI	GCAATG	3 cut(s)	266, 1061, 1103
BsrI	ACTGG	6 cut(s)	260, 429, 1708, 2614, 2876, 3237
BssECI	CCNNGG	7 cut(s)	11, 448, 818, 882, 1094, 3165, 3186
BssNI	GRCGYC	1 cut(s)	2859
BssT1I	CCWWGG	6 cut(s)	11, 448, 818, 1094, 3165, 3186
Bst2UI	CCWGG	5 cut(s)	349, 1479, 1605, 2559, 2592
Bst4CI	ACNGT	9 cut(s)	280, 846, 1005, 1511, 1583, 1648, 1907, 2033, 2358
Bst6I	CTCTTC	2 cut(s)	2438, 2542
BstACI	GRCGYC	1 cut(s)	2859
BstAFI	CTTAAG	1 cut(s)	2299
BstAPI	GCANNNNNTGC	2 cut(s)	242, 3140
BstC8I	GCNNGC	4 cut(s)	141, 466, 1848, 2975
BstDSI	CCRYGG	2 cut(s)	882, 1094
BstENI	CCTNNNNNAGG	2 cut(s)	41, 2443
BstFNI	CGCG	1 cut(s)	468
BstH2I	RGCGCY	1 cut(s)	1723
BstHHI	GCGC	3 cut(s)	1294, 1722, 2811
BstMAI	GTCTC	3 cut(s)	1167, 1523, 3031
BstMCI	CGRYCG	1 cut(s)	2993
BstNI	CCWGG	5 cut(s)	349, 1479, 1605, 2559, 2592
BstNSI	RCATGY	5 cut(s)	1031, 1180, 1850, 2601, 3290
BstSCI	CCNGG	6 cut(s)	347, 1446, 1477, 1603, 2557, 2590
BstSFI	CTRYAG	4 cut(s)	333, 737, 1017, 2703
BstSLI	GKGCMC	1 cut(s)	746
BstUI	CGCG	1 cut(s)	468
BstV1I	GCAGC	9 cut(s)	28, 130, 133, 221, 700, 1043, 1925, 2269, 3007
BstV2I	GAAGAC	1 cut(s)	58
BstX2I	RGATCY	5 cut(s)	376, 733, 1183, 1409, 3190
BstXI	CCANNNNNNTGG	3 cut(s)	127, 2558, 2795
BstYI	RGATCY	5 cut(s)	376, 733, 1183, 1409, 3190
Bsu15I	ATCGAT	1 cut(s)	2909
Bsu36I	CCTNAGG	1 cut(s)	3027
BsuRI	GGCC	5 cut(s)	90, 705, 2367, 2828, 2953
BsuTUI	ATCGAT	1 cut(s)	2909
BtgI	CCRYGG	2 cut(s)	882, 1094
BtgZI	GCGATG	1 cut(s)	1884
BtrI	CACGTC	1 cut(s)	3098
BtsI	GCAGTG	2 cut(s)	746, 1977
BtsIMutI	CAGTG	6 cut(s)	276, 746, 1912, 1977, 2354, 2607
BveI	ACCTGC	1 cut(s)	3289
Cac8I	GCNNGC	4 cut(s)	141, 466, 1848, 2975
CaiI	CAGNNNCTG	1 cut(s)	694
CciI	TCATGA	1 cut(s)	2637
CfoI	GCGC	3 cut(s)	1294, 1722, 2811
Cfr13I	GGNCC	5 cut(s)	413, 505, 1481, 2277, 2548
ClaI	ATCGAT	1 cut(s)	2909
CseI	GACGC	3 cut(s)	70, 782, 2867
Csp6I	GTAC	4 cut(s)	6, 952, 1548, 3162
CviAII	CATG	9 cut(s)	103, 1028, 1095, 1177, 1847, 2598, 2638, 3287, 3305
CviQI	GTAC	4 cut(s)	6, 952, 1548, 3162
DraI	TTTAAA	3 cut(s)	1839, 2136, 2406
DrdI	GACNNNNNNGTC	1 cut(s)	1402
DseDI	GACNNNNNNGTC	1 cut(s)	1402
EaeI	YGGCCR	1 cut(s)	2826
Eam1104I	CTCTTC	2 cut(s)	2438, 2542
EarI	CTCTTC	2 cut(s)	2438, 2542
EciI	GGCGGA	1 cut(s)	1433
Eco130I	CCWWGG	6 cut(s)	11, 448, 818, 1094, 3165, 3186
Eco31I	GGTCTC	2 cut(s)	1523, 3031
Eco32I	GATATC	1 cut(s)	1287
Eco47I	GGWCC	5 cut(s)	413, 505, 1481, 2277, 2548
Eco47III	AGCGCT	1 cut(s)	1721
Eco57I	CTGAAG	3 cut(s)	687, 1584, 3191
Eco81I	CCTNAGG	1 cut(s)	3027
Eco88I	CYCGRG	1 cut(s)	3248
EcoNI	CCTNNNNNAGG	2 cut(s)	41, 2443
EcoO109I	RGGNCCY	2 cut(s)	505, 1481
EcoRII	CCWGG	5 cut(s)	347, 1477, 1603, 2557, 2590
EcoRV	GATATC	1 cut(s)	1287
EcoT14I	CCWWGG	6 cut(s)	11, 448, 818, 1094, 3165, 3186
ErhI	CCWWGG	6 cut(s)	11, 448, 818, 1094, 3165, 3186
FaeI	CATG	9 cut(s)	106, 1031, 1098, 1180, 1850, 2601, 2641, 3290, 3308
FalI	AAGNNNNNCTT	2 cut(s)	1534, 1566
FaqI	GGGAC	4 cut(s)	518, 900, 1283, 2306
FatI	CATG	9 cut(s)	102, 1027, 1094, 1176, 1846, 2597, 2637, 3286, 3304
FauNDI	CATATG	1 cut(s)	521
FbaI	TGATCA	1 cut(s)	1501
FblI	GTMKAC	1 cut(s)	2307
FspBI	CTAG	8 cut(s)	356, 813, 948, 1344, 1734, 2369, 2846, 3060
GlaI	GCGC	3 cut(s)	1293, 1721, 2810
GsaI	CCCAGC	1 cut(s)	236
GsuI	CTGGAG	4 cut(s)	1461, 1830, 1849, 2631
HaeII	RGCGCY	1 cut(s)	1723
HaeIII	GGCC	5 cut(s)	90, 705, 2367, 2828, 2953
HapII	CCGG	3 cut(s)	1314, 1448, 2546
HgaI	GACGC	3 cut(s)	70, 782, 2867
HhaI	GCGC	3 cut(s)	1294, 1722, 2811
Hin1I	GRCGYC	1 cut(s)	2859
Hin1II	CATG	9 cut(s)	106, 1031, 1098, 1180, 1850, 2601, 2641, 3290, 3308
Hin6I	GCGC	3 cut(s)	1292, 1720, 2809
HinP1I	GCGC	3 cut(s)	1292, 1720, 2809
HincII	GTYRAC	2 cut(s)	133, 2308
HindII	GTYRAC	2 cut(s)	133, 2308
HindIII	AAGCTT	1 cut(s)	1798
HpaII	CCGG	3 cut(s)	1314, 1448, 2546
HphI	GGTGA	6 cut(s)	1286, 1655, 2426, 2867, 3015, 3338
Hpy166II	GTNNAC	4 cut(s)	133, 744, 1432, 2308
Hpy8I	GTNNAC	4 cut(s)	133, 744, 1432, 2308
Hpy99I	CGWCG	4 cut(s)	86, 925, 2991, 3099
HpyAV	CCTTC	9 cut(s)	176, 972, 1261, 1265, 1445, 2168, 2658, 2726, 3254
HpyCH4III	ACNGT	9 cut(s)	280, 846, 1005, 1511, 1583, 1648, 1907, 2033, 2358
HpyCH4IV	ACGT	2 cut(s)	1684, 3097
HpySE526I	ACGT	2 cut(s)	1684, 3097
Hsp92I	GRCGYC	1 cut(s)	2859
Hsp92II	CATG	9 cut(s)	106, 1031, 1098, 1180, 1850, 2601, 2641, 3290, 3308
HspAI	GCGC	3 cut(s)	1292, 1720, 2809
Kpn2I	TCCGGA	1 cut(s)	1313
KpnI	GGTACC	1 cut(s)	3165
Ksp22I	TGATCA	1 cut(s)	1501
LguI	GCTCTTC	1 cut(s)	2542
LmnI	GCTCC	6 cut(s)	122, 1222, 1910, 2119, 2248, 2790
Lsp1109I	GCAGC	9 cut(s)	28, 130, 133, 221, 700, 1043, 1925, 2269, 3007
LweI	GCATC	6 cut(s)	361, 619, 700, 2636, 2686, 2986
MaeI	CTAG	8 cut(s)	356, 813, 948, 1344, 1734, 2369, 2846, 3060
MaeII	ACGT	2 cut(s)	1684, 3097
MaeIII	GTNAC	8 cut(s)	32, 370, 877, 967, 1577, 2027, 2062, 2855
MfeI	CAATTG	2 cut(s)	591, 989
MflI	RGATCY	5 cut(s)	376, 733, 1183, 1409, 3190
MhlI	GDGCHC	3 cut(s)	678, 746, 3075
MlsI	TGGCCA	1 cut(s)	2828
MluI	ACGCGT	1 cut(s)	466
MluNI	TGGCCA	1 cut(s)	2828
MlyI	GAGTC	7 cut(s)	612, 926, 1198, 1529, 1856, 2303, 3057
MmeI	TCCRAC	3 cut(s)	262, 2288, 2485
Mox20I	TGGCCA	1 cut(s)	2828
MroI	TCCGGA	1 cut(s)	1313
MroXI	GAANNNNTTC	3 cut(s)	540, 2653, 2688
MscI	TGGCCA	1 cut(s)	2828
MslI	CAYNNNNRTG	2 cut(s)	857, 2060
Msp20I	TGGCCA	1 cut(s)	2828
MspCI	CTTAAG	1 cut(s)	2299
MspI	CCGG	3 cut(s)	1314, 1448, 2546
MspR9I	CCNGG	6 cut(s)	349, 1448, 1479, 1605, 2559, 2592
MunI	CAATTG	2 cut(s)	591, 989
MvaI	CCWGG	5 cut(s)	349, 1479, 1605, 2559, 2592
MvnI	CGCG	1 cut(s)	468
NciI	CCSGG	1 cut(s)	1448
NcoI	CCATGG	1 cut(s)	1094
NdeI	CATATG	1 cut(s)	521
NlaIII	CATG	9 cut(s)	106, 1031, 1098, 1180, 1850, 2601, 2641, 3290, 3308
NlaIV	GGNNCC	4 cut(s)	506, 2278, 2733, 3163
NmuCI	GTSAC	6 cut(s)	32, 370, 1577, 2027, 2062, 2855
NspI	RCATGY	5 cut(s)	1031, 1180, 1850, 2601, 3290
PaeI	GCATGC	1 cut(s)	1850
PaeR7I	CTCGAG	1 cut(s)	3248
PagI	TCATGA	1 cut(s)	2637
PaqCI	CACCTGC	1 cut(s)	3289
PciI	ACATGT	3 cut(s)	1176, 2597, 3286
PciSI	GCTCTTC	1 cut(s)	2542
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PdmI	GAANNNNTTC	3 cut(s)	540, 2653, 2688
PfeI	GAWTC	9 cut(s)	562, 866, 1468, 1598, 1714, 1874, 1976, 2474, 2678
PfoI	TCCNGGA	1 cut(s)	1603
PleI	GAGTC	7 cut(s)	612, 925, 1198, 1529, 1856, 2303, 3057
PpsI	GAGTC	7 cut(s)	612, 925, 1198, 1529, 1856, 2303, 3057
PpuMI	RGGWCCY	2 cut(s)	505, 1481
PscI	ACATGT	3 cut(s)	1176, 2597, 3286
PshBI	ATTAAT	2 cut(s)	828, 3119
PsiI	TTATAA	1 cut(s)	2969
Psp5II	RGGWCCY	2 cut(s)	505, 1481
Psp6I	CCWGG	5 cut(s)	347, 1477, 1603, 2557, 2590
PspFI	CCCAGC	1 cut(s)	232
PspGI	CCWGG	5 cut(s)	347, 1477, 1603, 2557, 2590
PspN4I	GGNNCC	4 cut(s)	506, 2278, 2733, 3163
PspPI	GGNCC	5 cut(s)	413, 505, 1481, 2277, 2548
PspPPI	RGGWCCY	2 cut(s)	505, 1481
PstI	CTGCAG	2 cut(s)	741, 1021
PstNI	CAGNNNCTG	1 cut(s)	694
PsuI	RGATCY	5 cut(s)	376, 733, 1183, 1409, 3190
RsaI	GTAC	4 cut(s)	7, 953, 1549, 3163
RsaNI	GTAC	4 cut(s)	6, 952, 1548, 3162
RseI	CAYNNNNRTG	2 cut(s)	857, 2060
SalI	GTCGAC	1 cut(s)	2306
SapI	GCTCTTC	1 cut(s)	2542
Sau96I	GGNCC	5 cut(s)	413, 505, 1481, 2277, 2548
ScaI	AGTACT	1 cut(s)	1549
SchI	GAGTC	7 cut(s)	612, 926, 1198, 1529, 1856, 2303, 3057
ScrFI	CCNGG	6 cut(s)	349, 1448, 1479, 1605, 2559, 2592
SduI	GDGCHC	3 cut(s)	678, 746, 3075
SfaNI	GCATC	6 cut(s)	361, 619, 700, 2636, 2686, 2986
SfcI	CTRYAG	4 cut(s)	333, 737, 1017, 2703
Sfr274I	CTCGAG	1 cut(s)	3248
SinI	GGWCC	5 cut(s)	413, 505, 1481, 2277, 2548
SlaI	CTCGAG	1 cut(s)	3248
SmiMI	CAYNNNNRTG	2 cut(s)	857, 2060
SmlI	CTYRAG	3 cut(s)	1206, 2299, 3248
SmoI	CTYRAG	3 cut(s)	1206, 2299, 3248
SphI	GCATGC	1 cut(s)	1850
SsiI	CCGC	3 cut(s)	207, 1444, 2993
SspI	AATATT	2 cut(s)	2017, 2964
SspMI	CTAG	8 cut(s)	356, 813, 948, 1344, 1734, 2369, 2846, 3060
StyD4I	CCNGG	6 cut(s)	347, 1446, 1477, 1603, 2557, 2590
StyI	CCWWGG	6 cut(s)	11, 448, 818, 1094, 3165, 3186
TaaI	ACNGT	9 cut(s)	280, 846, 1005, 1511, 1583, 1648, 1907, 2033, 2358
TaiI	ACGT	2 cut(s)	1687, 3100
TaqII	GACCGA	1 cut(s)	1547
TatI	WGTACW	1 cut(s)	1547
TauI	GCSGC	1 cut(s)	209
TfiI	GAWTC	9 cut(s)	562, 866, 1468, 1598, 1714, 1874, 1976, 2474, 2678
TscAI	CASTG	6 cut(s)	283, 746, 1912, 1977, 2361, 2614
TseFI	GTSAC	6 cut(s)	32, 370, 1577, 2027, 2062, 2855
TseI	GCWGC	9 cut(s)	16, 143, 146, 209, 688, 1031, 1913, 2257, 2995
Tsp45I	GTSAC	6 cut(s)	32, 370, 1577, 2027, 2062, 2855
TspGWI	ACGGA	3 cut(s)	20, 743, 2081
TspRI	CASTG	6 cut(s)	283, 746, 1912, 1977, 2361, 2614
Vha464I	CTTAAG	1 cut(s)	2299
VneI	GTGCAC	1 cut(s)	742
VpaK11BI	GGWCC	5 cut(s)	413, 505, 1481, 2277, 2548
VspI	ATTAAT	2 cut(s)	828, 3119
XagI	CCTNNNNNAGG	2 cut(s)	41, 2443
XceI	RCATGY	5 cut(s)	1031, 1180, 1850, 2601, 3290
XhoI	CTCGAG	1 cut(s)	3248
XmiI	GTMKAC	1 cut(s)	2307
XmnI	GAANNNNTTC	3 cut(s)	540, 2653, 2688
XspI	CTAG	8 cut(s)	356, 813, 948, 1344, 1734, 2369, 2846, 3060
ZrmI	AGTACT	1 cut(s)	1549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.