Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002365

Physical Location & Seq

Genomic Coordinates Forward (+)

32195548 .. 32196458

Gene Structure 911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0185100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGACGTCGCTTGCCATTTCTGAGAATGGGAAAATCATCTTTGGGGGCGGTTGCAACGCTACAATTTCCCAGCATCATTGCGTAATTGAGCGTCTGATTTCGGCTAAGAAGAAAATTGATGCGAAGGCTCTGATGGGAATTAACGATGTCATCCATTTGGGATTTGAAGGACCGCCTCTCGGTAGGAGAGGGATCTCATTGTTAATGGGGGTGGAAGTTTTTGGTCTTCCGCCAGCATTGGTTATAAAGGCAGCTTTAATGGTTGGCTCCACTTTAAGGTTTGTGCTACAGCTTGACAAGCCCAAGATCTGGCAGAGTACTTCTCAGGTAGCATACTTTCGTGTTCTGACTCTTGCTGCTGCTGACAGTGATGATCAGCAACGCATGACTCTGTGCGATCCTACTCTGATCATGGGTGTTAACCCCACTCCGACACCTTTGGGCACCTATATATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016787 GO:0016822 GO:0016823 GO:0018773 GO:0034545 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914

KEGG Pathways

Metabolic & Signaling

ko00350 ko01100 ko01120 map00350 map01100 map01120

Pfam Domains

Protein Families

FAA_hydrolase

Protein Analysis

152

Amino Acids

16.32

Weight (kDa)

8.76

Isoelectric Point (pI)

28.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16700 AT3G16700 AT3G16700 AT3G16700 AT4G15940
fragaria_vesca	FvH4_4g18580 FvH4_4g18580
malus_domestica	MD04G1020300.v1.1
prunus_persica	Prupe.1G124800_v2.0.a1 Prupe.1G125100_v2.0.a1
pyrus_communis	pycom10g01710 pycom10g01730 pycom16g13990
rosa_chinensis	RchiOBHm_Chr0c32g0501491 RchiOBHm_Chr4g0423181 RchiOBHm_Chr4g0423191
rosa_laevigata	RLG00000007578 RLG00000033195
rosa_multiflora	Rmu_sc0000580.1_g000006 Rmu_sc0003368.1_g000036 Rmu_sc0007269.1_g000013 Rmu_sc0007782.1_g000002 Rmu_sc0008829.1_g000004
rosa_roxburghii	Rroxscaffold_5G00365340 Rroxscaffold_5G00365370
rosa_rugosa	Rorug02G0398700 Rorug04G0185000 Rorug04G0185100
rosa_samantha	Rh2AG299600 Rh4AG244500 Rh4AG247800 Rh4BG249700 Rh4CG258800 Rh4DG244500 Rh5AG208600 Rh5AG217600 Rh5AG294800 Rh5BG129400 Rh5BG217400 Rh5DG211400 Rh6AG307700
rosa_wichuraiana	Rw4G021060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	245
AatII	GACGTC	1 cut(s)	8
AccB1I	GGYRCC	1 cut(s)	443
AccB7I	CCANNNNNTGG	1 cut(s)	309
AciI	CCGC	3 cut(s)	48, 173, 230
AclWI	GGATC	2 cut(s)	200, 392
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	319
AfiI	CCNNNNNNNGG	3 cut(s)	179, 276, 309
AgsI	TTSAA	1 cut(s)	167
AluBI	AGCT	2 cut(s)	254, 292
AluI	AGCT	2 cut(s)	254, 292
AlwI	GGATC	2 cut(s)	200, 392
ApeKI	GCWGC	3 cut(s)	251, 356, 359
AspS9I	GGNCC	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	170
BaeGI	GKGCMC	1 cut(s)	446
BanI	GGYRCC	1 cut(s)	443
BbsI	GAAGAC	1 cut(s)	218
BbvI	GCAGC	3 cut(s)	263, 343, 346
BccI	CCATC	1 cut(s)	127
BclI	TGATCA	2 cut(s)	373, 408
BfmI	CTRYAG	1 cut(s)	287
BglII	AGATCT	1 cut(s)	306
BisI	GCNGC	3 cut(s)	252, 357, 360
BlsI	GCNGC	3 cut(s)	253, 358, 361
BmcAI	AGTACT	1 cut(s)	319
Bme18I	GGWCC	1 cut(s)	170
BmgT120I	GGNCC	1 cut(s)	170
BmiI	GGNNCC	2 cut(s)	268, 445
BmsI	GCATC	2 cut(s)	82, 109
BpiI	GAAGAC	1 cut(s)	218
BplI	GAGNNNNNCTC	2 cut(s)	307, 339
BsaHI	GRCGYC	1 cut(s)	5
Bsc4I	CCNNNNNNNGG	3 cut(s)	179, 276, 309
Bse3DI	GCAATG	1 cut(s)	76
BseGI	GGATG	1 cut(s)	150
BseLI	CCNNNNNNNGG	3 cut(s)	179, 276, 309
BseMI	GCAATG	1 cut(s)	76
BseMII	CTCAG	2 cut(s)	12, 338
BseSI	GKGCMC	1 cut(s)	446
BseXI	GCAGC	3 cut(s)	263, 343, 346
BseYI	CCCAGC	1 cut(s)	69
BshNI	GGYRCC	1 cut(s)	443
BslI	CCNNNNNNNGG	3 cut(s)	179, 276, 309
Bsp1286I	GDGCHC	1 cut(s)	446
Bsp143I	GATC	5 cut(s)	192, 306, 373, 397, 408
BspACI	CCGC	3 cut(s)	48, 173, 230
BspCNI	CTCAG	2 cut(s)	13, 337
BspLI	GGNNCC	2 cut(s)	268, 445
BspPI	GGATC	2 cut(s)	200, 392
BspT107I	GGYRCC	1 cut(s)	443
BsrDI	GCAATG	1 cut(s)	76
BssMI	GATC	5 cut(s)	192, 306, 373, 397, 408
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	1 cut(s)	368
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	2 cut(s)	12, 234
BstDEI	CTNAG	3 cut(s)	21, 105, 324
BstF5I	GGATG	1 cut(s)	150
BstKTI	GATC	5 cut(s)	195, 309, 376, 400, 411
BstMBI	GATC	5 cut(s)	192, 306, 373, 397, 408
BstMWI	GCNNNNNNNGC	1 cut(s)	298
BstSFI	CTRYAG	1 cut(s)	287
BstSLI	GKGCMC	1 cut(s)	446
BstV1I	GCAGC	3 cut(s)	263, 343, 346
BstV2I	GAAGAC	1 cut(s)	218
BstX2I	RGATCY	2 cut(s)	192, 306
BstYI	RGATCY	2 cut(s)	192, 306
BtsCI	GGATG	1 cut(s)	150
BtsIMutI	CAGTG	1 cut(s)	373
Cac8I	GCNNGC	2 cut(s)	12, 234
Cfr13I	GGNCC	1 cut(s)	170
CseI	GACGC	1 cut(s)	80
Csp6I	GTAC	1 cut(s)	318
CviAII	CATG	2 cut(s)	385, 412
CviJI	RGCY	6 cut(s)	104, 128, 254, 267, 292, 301
CviKI_1	RGCY	6 cut(s)	104, 128, 254, 267, 292, 301
CviQI	GTAC	1 cut(s)	318
DdeI	CTNAG	3 cut(s)	21, 105, 324
DpnI	GATC	5 cut(s)	194, 308, 375, 399, 410
DpnII	GATC	5 cut(s)	192, 306, 373, 397, 408
EciI	GGCGGA	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	170
FaeI	CATG	2 cut(s)	388, 415
FaiI	YATR	7 cut(s)	245, 334, 386, 413, 450, 452, 454
FatI	CATG	2 cut(s)	384, 411
FbaI	TGATCA	2 cut(s)	373, 408
Fnu4HI	GCNGC	3 cut(s)	252, 357, 360
FokI	GGATG	1 cut(s)	137
Fsp4HI	GCNGC	3 cut(s)	252, 357, 360
GluI	GCNGC	3 cut(s)	252, 357, 360
GsaI	CCCAGC	1 cut(s)	73
HgaI	GACGC	1 cut(s)	80
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	388, 415
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HinfI	GANTC	2 cut(s)	349, 388
HpaI	GTTAAC	1 cut(s)	421
Hpy166II	GTNNAC	1 cut(s)	421
Hpy188I	TCNGA	6 cut(s)	22, 96, 132, 348, 408, 432
Hpy8I	GTNNAC	1 cut(s)	421
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	2 cut(s)	118, 161
HpyCH4III	ACNGT	1 cut(s)	368
HpyCH4IV	ACGT	1 cut(s)	5
HpyCH4V	TGCA	1 cut(s)	54
HpyF10VI	GCNNNNNNNGC	1 cut(s)	298
HpyF3I	CTNAG	3 cut(s)	21, 105, 324
HpySE526I	ACGT	1 cut(s)	5
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	388, 415
Ksp22I	TGATCA	2 cut(s)	373, 408
KspAI	GTTAAC	1 cut(s)	421
Kzo9I	GATC	5 cut(s)	192, 306, 373, 397, 408
LmnI	GCTCC	1 cut(s)	272
LpnPI	CCDG	4 cut(s)	83, 246, 295, 311
Lsp1109I	GCAGC	3 cut(s)	263, 343, 346
LweI	GCATC	2 cut(s)	82, 109
MaeII	ACGT	1 cut(s)	5
MalI	GATC	5 cut(s)	194, 308, 375, 399, 410
MboI	GATC	5 cut(s)	192, 306, 373, 397, 408
MboII	GAAGA	2 cut(s)	121, 218
MflI	RGATCY	2 cut(s)	192, 306
MhlI	GDGCHC	1 cut(s)	446
MluCI	AATT	4 cut(s)	63, 84, 114, 138
MlyI	GAGTC	2 cut(s)	343, 382
MmeI	TCCRAC	1 cut(s)	455
MnlI	CCTC	2 cut(s)	182, 186
MseI	TTAA	5 cut(s)	141, 203, 257, 275, 420
MwoI	GCNNNNNNNGC	1 cut(s)	298
NdeII	GATC	5 cut(s)	192, 306, 373, 397, 408
NlaIII	CATG	2 cut(s)	388, 415
NlaIV	GGNNCC	2 cut(s)	268, 445
PflMI	CCANNNNNTGG	1 cut(s)	309
PkrI	GCNGC	3 cut(s)	253, 358, 361
PleI	GAGTC	2 cut(s)	343, 382
PpsI	GAGTC	2 cut(s)	343, 382
PsiI	TTATAA	1 cut(s)	245
PspFI	CCCAGC	1 cut(s)	69
PspN4I	GGNNCC	2 cut(s)	268, 445
PspPI	GGNCC	1 cut(s)	170
PsuI	RGATCY	2 cut(s)	192, 306
RsaI	GTAC	1 cut(s)	319
RsaNI	GTAC	1 cut(s)	318
SaqAI	TTAA	5 cut(s)	141, 203, 257, 275, 420
SatI	GCNGC	3 cut(s)	252, 357, 360
Sau3AI	GATC	5 cut(s)	192, 306, 373, 397, 408
Sau96I	GGNCC	1 cut(s)	170
ScaI	AGTACT	1 cut(s)	319
SchI	GAGTC	2 cut(s)	343, 382
SduI	GDGCHC	1 cut(s)	446
SetI	ASST	7 cut(s)	8, 256, 281, 294, 330, 439, 449
SfaNI	GCATC	2 cut(s)	82, 109
SfcI	CTRYAG	1 cut(s)	287
SinI	GGWCC	1 cut(s)	170
Sse9I	AATT	4 cut(s)	63, 84, 114, 138
SsiI	CCGC	3 cut(s)	48, 173, 230
TaaI	ACNGT	1 cut(s)	368
TaiI	ACGT	1 cut(s)	8
TasI	AATT	4 cut(s)	63, 84, 114, 138
TatI	WGTACW	1 cut(s)	317
Tru1I	TTAA	5 cut(s)	141, 203, 257, 275, 420
Tru9I	TTAA	5 cut(s)	141, 203, 257, 275, 420
TscAI	CASTG	1 cut(s)	373
TseI	GCWGC	3 cut(s)	251, 356, 359
TspRI	CASTG	1 cut(s)	373
Van91I	CCANNNNNTGG	1 cut(s)	309
VpaK11BI	GGWCC	1 cut(s)	170
ZraI	GACGTC	1 cut(s)	6
ZrmI	AGTACT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.