Rh2AG299600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0002365
Physical Location & Seq
Reverse (-)
37393272 .. 37395432
2161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG299600.1

Sequence Viewer

Length: 165 bp
ATGAGGTGGAGGCGTGGAGCTACTGTCATCATATCCAAGAAAGCTCGCGATGTTCCTGAGGCCAAGGCCATAGATTACGTTGGTGGGAATCAAGAAGAAGCGTATCAAGAGAATCATCTGTACAAATTTGTTTTTGGTCAAAAAGATTATGAGGTGGCCGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

54

Amino Acids

6.23

Weight (kDa)

8.03

Isoelectric Point (pI)

42.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 48
AcoI YGGCCR 1 cut(s) 156
AcsI RAATTY 1 cut(s) 125
AfaI GTAC 1 cut(s) 122
AluBI AGCT 2 cut(s) 20, 44
AluI AGCT 2 cut(s) 20, 44
AoxI GGCC 3 cut(s) 60, 66, 156
ApoI RAATTY 1 cut(s) 125
AxyI CCTNAGG 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 63
BsaXI ACNNNNNCTCC 2 cut(s) 9, 39
Bse118I RCCGGY 1 cut(s) 158
Bse21I CCTNAGG 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 63
BseMII CTCAG 1 cut(s) 48
Bsh1236I CGCG 1 cut(s) 48
BshFI GGCC 3 cut(s) 62, 68, 158
BsiSI CCGG 1 cut(s) 159
BsnI GGCC 3 cut(s) 62, 68, 158
Bsp1407I TGTACA 1 cut(s) 120
Bsp68I TCGCGA 1 cut(s) 48
BspANI GGCC 3 cut(s) 62, 68, 158
BspCNI CTCAG 1 cut(s) 49
BspFNI CGCG 1 cut(s) 48
BsrFI RCCGGY 1 cut(s) 158
BsrGI TGTACA 1 cut(s) 120
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 1 cut(s) 63
BssT1I CCWWGG 1 cut(s) 63
Bst4CI ACNGT 1 cut(s) 25
BstAUI TGTACA 1 cut(s) 120
BstC8I GCNNGC 1 cut(s) 46
BstDEI CTNAG 1 cut(s) 57
BstFNI CGCG 1 cut(s) 48
BstUI CGCG 1 cut(s) 48
Bsu36I CCTNAGG 1 cut(s) 57
BsuRI GGCC 3 cut(s) 62, 68, 158
BtgZI GCGATG 1 cut(s) 63
BtuMI TCGCGA 1 cut(s) 48
Cac8I GCNNGC 1 cut(s) 46
Cfr10I RCCGGY 1 cut(s) 158
Csp6I GTAC 1 cut(s) 121
CviJI RGCY 5 cut(s) 20, 44, 62, 68, 158
CviKI_1 RGCY 5 cut(s) 20, 44, 62, 68, 158
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 1 cut(s) 57
EaeI YGGCCR 1 cut(s) 156
Eco130I CCWWGG 1 cut(s) 63
Eco81I CCTNAGG 1 cut(s) 57
EcoT14I CCWWGG 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 63
FaiI YATR 3 cut(s) 32, 71, 150
HaeIII GGCC 3 cut(s) 62, 68, 158
HapII CCGG 1 cut(s) 159
HinfI GANTC 2 cut(s) 88, 112
HpaII CCGG 1 cut(s) 159
Hpy188III TCNNGA 4 cut(s) 47, 56, 92, 107
HpyCH4III ACNGT 1 cut(s) 25
HpyCH4IV ACGT 1 cut(s) 78
HpyF3I CTNAG 1 cut(s) 57
HpySE526I ACGT 1 cut(s) 78
LmnI GCTCC 1 cut(s) 17
LpnPI CCDG 1 cut(s) 69
MaeII ACGT 1 cut(s) 78
MboII GAAGA 1 cut(s) 107
MluCI AATT 1 cut(s) 125
MnlI CCTC 3 cut(s) 3, 52, 145
MseI TTAA 1 cut(s) 163
MspI CCGG 1 cut(s) 159
MvnI CGCG 1 cut(s) 48
NruI TCGCGA 1 cut(s) 48
PfeI GAWTC 2 cut(s) 88, 112
RruI TCGCGA 1 cut(s) 48
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
SaqAI TTAA 1 cut(s) 163
SetI ASST 5 cut(s) 8, 22, 46, 81, 156
SgeI CNNG 8 cut(s) 26, 49, 57, 59, 68, 76, 104, 119
Sse9I AATT 1 cut(s) 125
StyI CCWWGG 1 cut(s) 63
TaaI ACNGT 1 cut(s) 25
TaiI ACGT 1 cut(s) 81
TasI AATT 1 cut(s) 125
TatI WGTACW 1 cut(s) 120
TfiI GAWTC 2 cut(s) 88, 112
Tru1I TTAA 1 cut(s) 163
Tru9I TTAA 1 cut(s) 163
XapI RAATTY 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.