Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003368.1

Orthogroup ID

OG0002365

Physical Location & Seq

Genomic Coordinates Reverse (-)

180417 .. 181525

Gene Structure 1109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003368.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atgattcatgaaggagcctgtgcttttctcaaaccgacgtcgtcttacttggaaaacggaggcaccatcaaaatcccttaccctctggagtcgttggaccatgaggtggaactggctgtcatcatatccaagaaagcttgcgatgtttcccaggccaaggccatgaattacgttggtgttattgcagacttggctcggagcggtaactccatcgaagcccttcgagccttttcttcaatgcgaaagctctctcagaccctaccgatcctcctttccttgtgccatcaaatcctgctctactctatgggatcttcactctggcaggcaagcccaccagcaggccttgacaatttttgttggaagttttcatttttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016787 GO:0016822 GO:0016823 GO:0018773 GO:0034545 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914

KEGG Pathways

Metabolic & Signaling

ko00350 ko01100 ko01120 map00350 map01100 map01120

Pfam Domains

Protein Families

FAA_hydrolase

Protein Analysis

125

Amino Acids

13.7

Weight (kDa)

6.81

Isoelectric Point (pI)

46.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16700 AT3G16700 AT3G16700 AT3G16700 AT4G15940
fragaria_vesca	FvH4_4g18580 FvH4_4g18580
malus_domestica	MD04G1020300.v1.1
prunus_persica	Prupe.1G124800_v2.0.a1 Prupe.1G125100_v2.0.a1
pyrus_communis	pycom10g01710 pycom10g01730 pycom16g13990
rosa_chinensis	RchiOBHm_Chr0c32g0501491 RchiOBHm_Chr4g0423181 RchiOBHm_Chr4g0423191
rosa_laevigata	RLG00000007578 RLG00000033195
rosa_multiflora	Rmu_sc0000580.1_g000006 Rmu_sc0003368.1_g000036 Rmu_sc0007269.1_g000013 Rmu_sc0007782.1_g000002 Rmu_sc0008829.1_g000004
rosa_roxburghii	Rroxscaffold_5G00365340 Rroxscaffold_5G00365370
rosa_rugosa	Rorug02G0398700 Rorug04G0185000 Rorug04G0185100
rosa_samantha	Rh2AG299600 Rh4AG244500 Rh4AG247800 Rh4BG249700 Rh4CG258800 Rh4DG244500 Rh5AG208600 Rh5AG217600 Rh5AG294800 Rh5BG129400 Rh5BG217400 Rh5DG211400 Rh6AG307700
rosa_wichuraiana	Rw4G021060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	41
AccB1I	GGYRCC	1 cut(s)	62
AccB7I	CCANNNNNTGG	1 cut(s)	106
AccBSI	CCGCTC	1 cut(s)	201
AciI	CCGC	1 cut(s)	201
AclWI	GGATC	2 cut(s)	259, 316
AcyI	GRCGYC	1 cut(s)	38
AfiI	CCNNNNNNNGG	3 cut(s)	106, 157, 338
AgsI	TTSAA	1 cut(s)	237
AjnI	CCWGG	1 cut(s)	150
AluBI	AGCT	2 cut(s)	137, 247
AluI	AGCT	2 cut(s)	137, 247
AlwI	GGATC	2 cut(s)	259, 316
AoxI	GGCC	3 cut(s)	153, 159, 340
Asp700I	GAANNNNTTC	1 cut(s)	219
AspS9I	GGNCC	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	97
BanI	GGYRCC	1 cut(s)	62
BccI	CCATC	3 cut(s)	74, 218, 291
BciT130I	CCWGG	1 cut(s)	152
Bme1390I	CCNGG	1 cut(s)	152
Bme18I	GGWCC	1 cut(s)	97
BmgT120I	GGNCC	1 cut(s)	97
BmiI	GGNNCC	2 cut(s)	16, 64
BmrFI	CCNGG	1 cut(s)	152
BpmI	CTGGAG	1 cut(s)	107
BsaHI	GRCGYC	1 cut(s)	38
BsaJI	CCNNGG	2 cut(s)	150, 156
BsaXI	ACNNNNNCTCC	2 cut(s)	252, 282
Bsc4I	CCNNNNNNNGG	3 cut(s)	106, 157, 338
Bse1I	ACTGG	1 cut(s)	117
BseBI	CCWGG	1 cut(s)	152
BseDI	CCNNGG	2 cut(s)	150, 156
BseLI	CCNNNNNNNGG	3 cut(s)	106, 157, 338
BseMII	CTCAG	1 cut(s)	266
BseNI	ACTGG	1 cut(s)	117
BshFI	GGCC	3 cut(s)	155, 161, 342
BshNI	GGYRCC	1 cut(s)	62
BslI	CCNNNNNNNGG	3 cut(s)	106, 157, 338
BsnI	GGCC	3 cut(s)	155, 161, 342
Bsp143I	GATC	2 cut(s)	264, 308
BspACI	CCGC	1 cut(s)	201
BspANI	GGCC	3 cut(s)	155, 161, 342
BspCNI	CTCAG	1 cut(s)	265
BspHI	TCATGA	1 cut(s)	7
BspLI	GGNNCC	2 cut(s)	16, 64
BspPI	GGATC	2 cut(s)	259, 316
BspT107I	GGYRCC	1 cut(s)	62
BsrBI	CCGCTC	1 cut(s)	201
BsrI	ACTGG	1 cut(s)	117
BssECI	CCNNGG	2 cut(s)	150, 156
BssMI	GATC	2 cut(s)	264, 308
BssNI	GRCGYC	1 cut(s)	38
BssT1I	CCWWGG	1 cut(s)	156
Bst2UI	CCWGG	1 cut(s)	152
BstACI	GRCGYC	1 cut(s)	38
BstC8I	GCNNGC	4 cut(s)	139, 324, 328, 340
BstDEI	CTNAG	1 cut(s)	252
BstKTI	GATC	2 cut(s)	267, 311
BstMBI	GATC	2 cut(s)	264, 308
BstMWI	GCNNNNNNNGC	2 cut(s)	191, 224
BstNI	CCWGG	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	150
BstX2I	RGATCY	1 cut(s)	308
BstYI	RGATCY	1 cut(s)	308
BsuRI	GGCC	3 cut(s)	155, 161, 342
BtgZI	GCGATG	1 cut(s)	156
Cac8I	GCNNGC	4 cut(s)	139, 324, 328, 340
CciI	TCATGA	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	97
CviAII	CATG	3 cut(s)	8, 101, 163
DdeI	CTNAG	1 cut(s)	252
DpnI	GATC	2 cut(s)	266, 310
DpnII	GATC	2 cut(s)	264, 308
Eco130I	CCWWGG	1 cut(s)	156
Eco147I	AGGCCT	1 cut(s)	342
Eco47I	GGWCC	1 cut(s)	97
EcoRII	CCWGG	1 cut(s)	150
EcoT14I	CCWWGG	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	3 cut(s)	11, 104, 166
FaiI	YATR	5 cut(s)	9, 102, 125, 164, 305
FatI	CATG	3 cut(s)	7, 100, 162
GsuI	CTGGAG	1 cut(s)	107
HaeIII	GGCC	3 cut(s)	155, 161, 342
Hin1I	GRCGYC	1 cut(s)	38
Hin1II	CATG	3 cut(s)	11, 104, 166
HindIII	AAGCTT	1 cut(s)	135
HinfI	GANTC	2 cut(s)	4, 89
Hpy188I	TCNGA	2 cut(s)	198, 255
Hpy188III	TCNNGA	2 cut(s)	8, 86
Hpy99I	CGWCG	2 cut(s)	40, 43
HpyAV	CCTTC	2 cut(s)	5, 230
HpyCH4IV	ACGT	2 cut(s)	38, 171
HpyCH4V	TGCA	1 cut(s)	185
HpyF10VI	GCNNNNNNNGC	2 cut(s)	191, 224
HpyF3I	CTNAG	1 cut(s)	252
HpySE526I	ACGT	2 cut(s)	38, 171
Hsp92I	GRCGYC	1 cut(s)	38
Hsp92II	CATG	3 cut(s)	11, 104, 166
Kzo9I	GATC	2 cut(s)	264, 308
LmnI	GCTCC	2 cut(s)	14, 198
MaeII	ACGT	2 cut(s)	38, 171
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	2 cut(s)	266, 310
MbiI	CCGCTC	1 cut(s)	201
MboI	GATC	2 cut(s)	264, 308
MboII	GAAGA	2 cut(s)	225, 303
MflI	RGATCY	1 cut(s)	308
MluCI	AATT	2 cut(s)	166, 349
MlyI	GAGTC	1 cut(s)	98
MmeI	TCCRAC	2 cut(s)	75, 338
MnlI	CCTC	4 cut(s)	53, 93, 97, 278
MroXI	GAANNNNTTC	1 cut(s)	219
MspR9I	CCNGG	1 cut(s)	152
MvaI	CCWGG	1 cut(s)	152
MwoI	GCNNNNNNNGC	2 cut(s)	191, 224
NdeII	GATC	2 cut(s)	264, 308
NlaIII	CATG	3 cut(s)	11, 104, 166
NlaIV	GGNNCC	2 cut(s)	16, 64
PagI	TCATGA	1 cut(s)	7
PceI	AGGCCT	1 cut(s)	342
PdmI	GAANNNNTTC	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	4
PflFI	GACNNNGTC	1 cut(s)	40
PflMI	CCANNNNNTGG	1 cut(s)	106
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
Psp6I	CCWGG	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	150
PspN4I	GGNNCC	2 cut(s)	16, 64
PspPI	GGNCC	1 cut(s)	97
PsuI	RGATCY	1 cut(s)	308
PsyI	GACNNNGTC	1 cut(s)	40
Sau3AI	GATC	2 cut(s)	264, 308
Sau96I	GGNCC	1 cut(s)	97
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	1 cut(s)	152
SetI	ASST	5 cut(s)	41, 108, 139, 174, 249
SinI	GGWCC	1 cut(s)	97
Sse9I	AATT	2 cut(s)	166, 349
SseBI	AGGCCT	1 cut(s)	342
SsiI	CCGC	1 cut(s)	201
StuI	AGGCCT	1 cut(s)	342
StyD4I	CCNGG	1 cut(s)	150
StyI	CCWWGG	1 cut(s)	156
TaiI	ACGT	2 cut(s)	41, 174
TaqI	TCGA	2 cut(s)	213, 223
TasI	AATT	2 cut(s)	166, 349
TfiI	GAWTC	1 cut(s)	4
TspDTI	ATGAA	3 cut(s)	24, 179, 357
TspGWI	ACGGA	1 cut(s)	72
Tth111I	GACNNNGTC	1 cut(s)	40
Van91I	CCANNNNNTGG	1 cut(s)	106
VpaK11BI	GGWCC	1 cut(s)	97
XmnI	GAANNNNTTC	1 cut(s)	219
ZraI	GACGTC	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.