Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002365

Physical Location & Seq

Genomic Coordinates Forward (+)

48815865 .. 48816655

Gene Structure 791 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39261

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGATCATAGCAAAAGGGCAGGACTCCACACAGATCAGCTCTGTGCCTCTGTGCTATCCATGGCAATGGTGCCAGACCCTGACTATTTGGAACTGTGGTTGAAGGTAGATGGAGAAGTGAGGCAAAAAGGCTTAAGCAAGGATATGATATTCGAAATCCCATTCCTCATCAGCCACATAAGCTCCATTATGACTCTTCTCGAAGGAGATAATAATGTAATACTAACAGGCACTCCCAGAGCTGTTGGTCCAGTAAAGCAGGCAAAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016787 GO:0016822 GO:0016823 GO:0018773 GO:0034545 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914

KEGG Pathways

Metabolic & Signaling

ko00350 ko01100 ko01120 map00350 map01100 map01120

Pfam Domains

Protein Families

FAA_hydrolase

Protein Analysis

90

Amino Acids

9.98

Weight (kDa)

6.25

Isoelectric Point (pI)

32.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAA_hydrolase	PF01557	18 - 83	2.3e-15	Fumarylacetoacetate (FAA) hydrolase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16700 AT3G16700 AT3G16700 AT3G16700 AT4G15940
fragaria_vesca	FvH4_4g18580 FvH4_4g18580
malus_domestica	MD04G1020300.v1.1
prunus_persica	Prupe.1G124800_v2.0.a1 Prupe.1G125100_v2.0.a1
pyrus_communis	pycom10g01710 pycom10g01730 pycom16g13990
rosa_chinensis	RchiOBHm_Chr0c32g0501491 RchiOBHm_Chr4g0423181 RchiOBHm_Chr4g0423191
rosa_laevigata	RLG00000007578 RLG00000033195
rosa_multiflora	Rmu_sc0000580.1_g000006 Rmu_sc0003368.1_g000036 Rmu_sc0007269.1_g000013 Rmu_sc0007782.1_g000002 Rmu_sc0008829.1_g000004
rosa_roxburghii	Rroxscaffold_5G00365340 Rroxscaffold_5G00365370
rosa_rugosa	Rorug02G0398700 Rorug04G0185000 Rorug04G0185100
rosa_samantha	Rh2AG299600 Rh4AG244500 Rh4AG247800 Rh4BG249700 Rh4CG258800 Rh4DG244500 Rh5AG208600 Rh5AG217600 Rh5AG294800 Rh5BG129400 Rh5BG217400 Rh5DG211400 Rh6AG307700
rosa_wichuraiana	Rw4G021060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	70
AclWI	GGATC	1 cut(s)	12
AflII	CTTAAG	1 cut(s)	133
AgsI	TTSAA	1 cut(s)	103
AluBI	AGCT	3 cut(s)	40, 183, 242
AluI	AGCT	3 cut(s)	40, 183, 242
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	80
AspS9I	GGNCC	1 cut(s)	248
AsuII	TTCGAA	1 cut(s)	153
AvaII	GGWCC	1 cut(s)	248
BanI	GGYRCC	1 cut(s)	70
BccI	CCATC	1 cut(s)	104
BfrI	CTTAAG	1 cut(s)	133
Bme18I	GGWCC	1 cut(s)	248
BmgT120I	GGNCC	1 cut(s)	248
BmiI	GGNNCC	1 cut(s)	72
Bpu14I	TTCGAA	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	60
BsaXI	ACNNNNNCTCC	4 cut(s)	167, 197, 217, 247
Bse1I	ACTGG	1 cut(s)	251
Bse3DI	GCAATG	1 cut(s)	72
BseDI	CCNNGG	1 cut(s)	60
BseMI	GCAATG	1 cut(s)	72
BseNI	ACTGG	1 cut(s)	251
BshNI	GGYRCC	1 cut(s)	70
Bsp119I	TTCGAA	1 cut(s)	153
Bsp143I	GATC	2 cut(s)	4, 34
Bsp19I	CCATGG	1 cut(s)	60
BspLI	GGNNCC	1 cut(s)	72
BspPI	GGATC	1 cut(s)	12
BspT104I	TTCGAA	1 cut(s)	153
BspT107I	GGYRCC	1 cut(s)	70
BspTI	CTTAAG	1 cut(s)	133
BsrDI	GCAATG	1 cut(s)	72
BsrI	ACTGG	1 cut(s)	251
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	2 cut(s)	4, 34
BssT1I	CCWWGG	1 cut(s)	60
Bst4CI	ACNGT	1 cut(s)	96
Bst6I	CTCTTC	1 cut(s)	201
BstAFI	CTTAAG	1 cut(s)	133
BstBI	TTCGAA	1 cut(s)	153
BstC8I	GCNNGC	1 cut(s)	261
BstDSI	CCRYGG	1 cut(s)	60
BstKTI	GATC	2 cut(s)	7, 37
BstMBI	GATC	2 cut(s)	4, 34
BstMWI	GCNNNNNNNGC	1 cut(s)	180
BstXI	CCANNNNNNTGG	1 cut(s)	67
BtgI	CCRYGG	1 cut(s)	60
Cac8I	GCNNGC	1 cut(s)	261
CaiI	CAGNNNCTG	1 cut(s)	80
Cfr13I	GGNCC	1 cut(s)	248
CviAII	CATG	1 cut(s)	61
CviJI	RGCY	5 cut(s)	40, 132, 174, 183, 242
CviKI_1	RGCY	5 cut(s)	40, 132, 174, 183, 242
DpnI	GATC	2 cut(s)	6, 36
DpnII	GATC	2 cut(s)	4, 34
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	60
Eco47I	GGWCC	1 cut(s)	248
EcoT14I	CCWWGG	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	1 cut(s)	64
FaiI	YATR	5 cut(s)	9, 62, 146, 179, 191
FatI	CATG	1 cut(s)	60
Hin1II	CATG	1 cut(s)	64
HinfI	GANTC	2 cut(s)	24, 193
Hpy188III	TCNNGA	1 cut(s)	200
HpyAV	CCTTC	2 cut(s)	97, 197
HpyCH4III	ACNGT	1 cut(s)	96
HpyF10VI	GCNNNNNNNGC	1 cut(s)	180
Hsp92II	CATG	1 cut(s)	64
Kzo9I	GATC	2 cut(s)	4, 34
LmnI	GCTCC	1 cut(s)	188
LpnPI	CCDG	7 cut(s)	6, 87, 93, 213, 245, 250, 264
MalI	GATC	2 cut(s)	6, 36
MboI	GATC	2 cut(s)	4, 34
MboII	GAAGA	1 cut(s)	188
MlyI	GAGTC	2 cut(s)	18, 187
MnlI	CCTC	3 cut(s)	58, 114, 176
MseI	TTAA	1 cut(s)	134
MslI	CAYNNNNRTG	1 cut(s)	65
MspCI	CTTAAG	1 cut(s)	133
MwoI	GCNNNNNNNGC	1 cut(s)	180
NcoI	CCATGG	1 cut(s)	60
NdeII	GATC	2 cut(s)	4, 34
NlaIII	CATG	1 cut(s)	64
NlaIV	GGNNCC	1 cut(s)	72
NspV	TTCGAA	1 cut(s)	153
PleI	GAGTC	2 cut(s)	18, 187
PpsI	GAGTC	2 cut(s)	18, 187
PspN4I	GGNNCC	1 cut(s)	72
PspPI	GGNCC	1 cut(s)	248
PstNI	CAGNNNCTG	1 cut(s)	80
RseI	CAYNNNNRTG	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	134
Sau3AI	GATC	2 cut(s)	4, 34
Sau96I	GGNCC	1 cut(s)	248
SchI	GAGTC	2 cut(s)	18, 187
SetI	ASST	4 cut(s)	42, 108, 185, 244
SfuI	TTCGAA	1 cut(s)	153
SgeI	CNNG	9 cut(s)	33, 73, 86, 92, 151, 212, 240, 249, 263
SinI	GGWCC	1 cut(s)	248
SmiMI	CAYNNNNRTG	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	133
SmoI	CTYRAG	1 cut(s)	133
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	1 cut(s)	96
TaqI	TCGA	2 cut(s)	153, 201
Tru1I	TTAA	1 cut(s)	134
Tru9I	TTAA	1 cut(s)	134
Vha464I	CTTAAG	1 cut(s)	133
VpaK11BI	GGWCC	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.