Rh5AG208600

Acylpyruvase FAHD1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0002365
Physical Location & Seq
Forward (+)
24590703 .. 24593168
2466 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG208600.1

Sequence Viewer

Length: 231 bp
ATGAAGGAGCCTGTGCTTTTTCTCAAACCGACGTCGTCTTACTTGGAAAACGGAGGCACCATCAAAATCCCTCACCCTCTGGAGTCGTTGGACCATGAGGTGGAACTGGCTGTCATCATATCCAAGAAAGCTTGCGATGTTCCCCAGGCCAAGGCCATGAATTACGTTGGTGGTTATGCACTTGCTCTTAATATGACTGCAAGAGAGATTCAAGCTACTGCTAAGAGGTGA

Protein Analysis

76

Amino Acids

8.31

Weight (kDa)

7.88

Isoelectric Point (pI)

35.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAA_hydrolase PF01557 2 - 75 3.2e-19 Fumarylacetoacetate (FAA) hydrolase C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 35
AccB1I GGYRCC 1 cut(s) 56
AccB7I CCANNNNNTGG 1 cut(s) 100
AcyI GRCGYC 1 cut(s) 32
AfiI CCNNNNNNNGG 2 cut(s) 100, 151
AgsI TTSAA 1 cut(s) 212
AjnI CCWGG 1 cut(s) 144
AluBI AGCT 2 cut(s) 131, 215
AluI AGCT 2 cut(s) 131, 215
AoxI GGCC 2 cut(s) 147, 153
AspS9I GGNCC 1 cut(s) 91
AsuHPI GGTGA 1 cut(s) 65
AvaII GGWCC 1 cut(s) 91
BanI GGYRCC 1 cut(s) 56
BccI CCATC 1 cut(s) 68
BciT130I CCWGG 1 cut(s) 146
Bme1390I CCNGG 1 cut(s) 146
Bme18I GGWCC 1 cut(s) 91
BmgT120I GGNCC 1 cut(s) 91
BmiI GGNNCC 2 cut(s) 9, 58
BmrFI CCNGG 1 cut(s) 146
BpmI CTGGAG 1 cut(s) 101
BsaHI GRCGYC 1 cut(s) 32
BsaJI CCNNGG 2 cut(s) 144, 150
Bsc4I CCNNNNNNNGG 2 cut(s) 100, 151
Bse1I ACTGG 1 cut(s) 111
BseBI CCWGG 1 cut(s) 146
BseDI CCNNGG 2 cut(s) 144, 150
BseLI CCNNNNNNNGG 2 cut(s) 100, 151
BseNI ACTGG 1 cut(s) 111
BshFI GGCC 2 cut(s) 149, 155
BshNI GGYRCC 1 cut(s) 56
BslI CCNNNNNNNGG 2 cut(s) 100, 151
BsnI GGCC 2 cut(s) 149, 155
BspANI GGCC 2 cut(s) 149, 155
BspLI GGNNCC 2 cut(s) 9, 58
BspT107I GGYRCC 1 cut(s) 56
BsrI ACTGG 1 cut(s) 111
BssECI CCNNGG 2 cut(s) 144, 150
BssNI GRCGYC 1 cut(s) 32
BssT1I CCWWGG 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 146
BstACI GRCGYC 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 133
BstDEI CTNAG 1 cut(s) 222
BstNI CCWGG 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 144
BsuRI GGCC 2 cut(s) 149, 155
BtgZI GCGATG 1 cut(s) 150
Cac8I GCNNGC 1 cut(s) 133
Cfr13I GGNCC 1 cut(s) 91
CviAII CATG 2 cut(s) 95, 157
CviJI RGCY 6 cut(s) 10, 110, 131, 149, 155, 215
CviKI_1 RGCY 6 cut(s) 10, 110, 131, 149, 155, 215
DdeI CTNAG 1 cut(s) 222
Eco130I CCWWGG 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 91
EcoRII CCWGG 1 cut(s) 144
EcoT14I CCWWGG 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 150
FaeI CATG 2 cut(s) 98, 160
FaiI YATR 5 cut(s) 96, 119, 158, 177, 194
FatI CATG 2 cut(s) 94, 156
GsuI CTGGAG 1 cut(s) 101
HaeIII GGCC 2 cut(s) 149, 155
Hin1I GRCGYC 1 cut(s) 32
Hin1II CATG 2 cut(s) 98, 160
HindIII AAGCTT 1 cut(s) 129
HinfI GANTC 2 cut(s) 83, 208
HphI GGTGA 1 cut(s) 65
Hpy188III TCNNGA 1 cut(s) 80
Hpy99I CGWCG 2 cut(s) 34, 37
HpyCH4IV ACGT 2 cut(s) 32, 165
HpyCH4V TGCA 2 cut(s) 179, 200
HpyF3I CTNAG 1 cut(s) 222
HpySE526I ACGT 2 cut(s) 32, 165
Hsp92I GRCGYC 1 cut(s) 32
Hsp92II CATG 2 cut(s) 98, 160
LmnI GCTCC 1 cut(s) 7
LpnPI CCDG 5 cut(s) 24, 65, 92, 131, 158
MaeII ACGT 2 cut(s) 32, 165
MluCI AATT 1 cut(s) 160
MlyI GAGTC 1 cut(s) 92
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 5 cut(s) 47, 81, 87, 91, 219
MseI TTAA 1 cut(s) 189
MspR9I CCNGG 1 cut(s) 146
MvaI CCWGG 1 cut(s) 146
NlaIII CATG 2 cut(s) 98, 160
NlaIV GGNNCC 2 cut(s) 9, 58
PfeI GAWTC 1 cut(s) 208
PflFI GACNNNGTC 1 cut(s) 34
PflMI CCANNNNNTGG 1 cut(s) 100
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
Psp6I CCWGG 1 cut(s) 144
PspGI CCWGG 1 cut(s) 144
PspN4I GGNNCC 2 cut(s) 9, 58
PspPI GGNCC 1 cut(s) 91
PsyI GACNNNGTC 1 cut(s) 34
SaqAI TTAA 1 cut(s) 189
Sau96I GGNCC 1 cut(s) 91
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 146
SetI ASST 6 cut(s) 35, 102, 133, 168, 217, 230
SinI GGWCC 1 cut(s) 91
Sse9I AATT 1 cut(s) 160
StyD4I CCNGG 1 cut(s) 144
StyI CCWWGG 1 cut(s) 150
TaiI ACGT 2 cut(s) 35, 168
TasI AATT 1 cut(s) 160
TfiI GAWTC 1 cut(s) 208
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TspDTI ATGAA 2 cut(s) 17, 173
TspGWI ACGGA 1 cut(s) 66
Tth111I GACNNNGTC 1 cut(s) 34
Van91I CCANNNNNTGG 1 cut(s) 100
VpaK11BI GGWCC 1 cut(s) 91
ZraI GACGTC 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.