Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002365

Physical Location & Seq

Genomic Coordinates Reverse (-)

12563359 .. 12564516

Gene Structure 1158 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG129400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGAGGTGGAGGCGTGGAGCTGCTGTCATCATATCCAAGAAAGCTCGCGATGTTCCTCAGGCCAAGGCCATGGATTACGTTGGTGGTTATGCACTTGCTCTTGATATGACTGACAGAGAGATTCAAGCTACTGCTAAGTGCATCAGTTCAAATTTTAGACCTGTGATCTTGTTTAGGATTTGCTTTTGGTCAAAGAGGAACATGGTGAGGCTCGCTACAGGACGTTTGGACTCACAGTCGTCAATGGCGTTCAACCAGACAGGCCAAGGCGCTTCTGGAGGAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0016787 GO:0016822 GO:0016823 GO:0018773 GO:0034545 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914

KEGG Pathways

Metabolic & Signaling

ko00350 ko01100 ko01120 map00350 map01100 map01120

Pfam Domains

Protein Families

FAA_hydrolase

Protein Analysis

95

Amino Acids

10.56

Weight (kDa)

10.9

Isoelectric Point (pI)

47.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAA_hydrolase	PF01557	8 - 46	1.6e-09	Fumarylacetoacetate (FAA) hydrolase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16700 AT3G16700 AT3G16700 AT3G16700 AT4G15940
fragaria_vesca	FvH4_4g18580 FvH4_4g18580
malus_domestica	MD04G1020300.v1.1
prunus_persica	Prupe.1G124800_v2.0.a1 Prupe.1G125100_v2.0.a1
pyrus_communis	pycom10g01710 pycom10g01730 pycom16g13990
rosa_chinensis	RchiOBHm_Chr0c32g0501491 RchiOBHm_Chr4g0423181 RchiOBHm_Chr4g0423191
rosa_laevigata	RLG00000007578 RLG00000033195
rosa_multiflora	Rmu_sc0000580.1_g000006 Rmu_sc0003368.1_g000036 Rmu_sc0007269.1_g000013 Rmu_sc0007782.1_g000002 Rmu_sc0008829.1_g000004
rosa_roxburghii	Rroxscaffold_5G00365340 Rroxscaffold_5G00365370
rosa_rugosa	Rorug02G0398700 Rorug04G0185000 Rorug04G0185100
rosa_samantha	Rh2AG299600 Rh4AG244500 Rh4AG247800 Rh4BG249700 Rh4CG258800 Rh4DG244500 Rh5AG208600 Rh5AG217600 Rh5AG294800 Rh5BG129400 Rh5BG217400 Rh5DG211400 Rh6AG307700
rosa_wichuraiana	Rw4G021060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	151
AgsI	TTSAA	3 cut(s)	125, 150, 253
AhdI	GACNNNNNGTC	1 cut(s)	235
AluBI	AGCT	3 cut(s)	20, 44, 128
AluI	AGCT	3 cut(s)	20, 44, 128
AoxI	GGCC	3 cut(s)	60, 66, 262
ApeKI	GCWGC	1 cut(s)	20
ApoI	RAATTY	1 cut(s)	151
AspLEI	GCGC	1 cut(s)	272
AsuHPI	GGTGA	1 cut(s)	217
AxyI	CCTNAGG	1 cut(s)	57
BbvI	GCAGC	1 cut(s)	7
BfmI	CTRYAG	1 cut(s)	216
BfoI	RGCGCY	1 cut(s)	273
BisI	GCNGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	22
BmeRI	GACNNNNNGTC	1 cut(s)	235
BmsI	GCATC	1 cut(s)	150
BsaJI	CCNNGG	3 cut(s)	63, 69, 265
BsaXI	ACNNNNNCTCC	2 cut(s)	9, 39
Bse21I	CCTNAGG	1 cut(s)	57
BseDI	CCNNGG	3 cut(s)	63, 69, 265
BseMII	CTCAG	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	7
Bsh1236I	CGCG	1 cut(s)	48
BshFI	GGCC	3 cut(s)	62, 68, 264
BsnI	GGCC	3 cut(s)	62, 68, 264
Bsp143I	GATC	1 cut(s)	165
Bsp19I	CCATGG	1 cut(s)	69
Bsp68I	TCGCGA	1 cut(s)	48
BspANI	GGCC	3 cut(s)	62, 68, 264
BspCNI	CTCAG	1 cut(s)	70
BspFNI	CGCG	1 cut(s)	48
BssECI	CCNNGG	3 cut(s)	63, 69, 265
BssMI	GATC	1 cut(s)	165
BssT1I	CCWWGG	3 cut(s)	63, 69, 265
Bst4CI	ACNGT	1 cut(s)	237
BstC8I	GCNNGC	2 cut(s)	46, 213
BstDEI	CTNAG	2 cut(s)	57, 135
BstDSI	CCRYGG	1 cut(s)	69
BstFNI	CGCG	1 cut(s)	48
BstH2I	RGCGCY	1 cut(s)	273
BstHHI	GCGC	1 cut(s)	272
BstKTI	GATC	1 cut(s)	168
BstMBI	GATC	1 cut(s)	165
BstSFI	CTRYAG	1 cut(s)	216
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	7
BstXI	CCANNNNNNTGG	1 cut(s)	70
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	3 cut(s)	62, 68, 264
BtgI	CCRYGG	1 cut(s)	69
BtgZI	GCGATG	1 cut(s)	63
BtuMI	TCGCGA	1 cut(s)	48
Cac8I	GCNNGC	2 cut(s)	46, 213
CfoI	GCGC	1 cut(s)	272
CviAII	CATG	2 cut(s)	70, 202
CviJI	RGCY	7 cut(s)	20, 44, 62, 68, 128, 211, 264
CviKI_1	RGCY	7 cut(s)	20, 44, 62, 68, 128, 211, 264
DdeI	CTNAG	2 cut(s)	57, 135
DpnI	GATC	1 cut(s)	167
DpnII	GATC	1 cut(s)	165
DriI	GACNNNNNGTC	1 cut(s)	235
Eam1105I	GACNNNNNGTC	1 cut(s)	235
Eco130I	CCWWGG	3 cut(s)	63, 69, 265
Eco81I	CCTNAGG	1 cut(s)	57
EcoT14I	CCWWGG	3 cut(s)	63, 69, 265
ErhI	CCWWGG	3 cut(s)	63, 69, 265
FaeI	CATG	2 cut(s)	73, 205
FaiI	YATR	5 cut(s)	32, 71, 90, 107, 203
FatI	CATG	2 cut(s)	69, 201
Fnu4HI	GCNGC	1 cut(s)	21
Fsp4HI	GCNGC	1 cut(s)	21
GlaI	GCGC	1 cut(s)	271
GluI	GCNGC	1 cut(s)	21
HaeII	RGCGCY	1 cut(s)	273
HaeIII	GGCC	3 cut(s)	62, 68, 264
HhaI	GCGC	1 cut(s)	272
Hin1II	CATG	2 cut(s)	73, 205
Hin6I	GCGC	1 cut(s)	270
HinP1I	GCGC	1 cut(s)	270
HinfI	GANTC	2 cut(s)	121, 230
HphI	GGTGA	1 cut(s)	217
Hpy188III	TCNNGA	3 cut(s)	47, 101, 276
HpyAV	CCTTC	1 cut(s)	276
HpyCH4III	ACNGT	1 cut(s)	237
HpyCH4IV	ACGT	2 cut(s)	78, 223
HpyCH4V	TGCA	2 cut(s)	92, 141
HpyF3I	CTNAG	2 cut(s)	57, 135
HpySE526I	ACGT	2 cut(s)	78, 223
Hsp92II	CATG	2 cut(s)	73, 205
HspAI	GCGC	1 cut(s)	270
Kzo9I	GATC	1 cut(s)	165
LmnI	GCTCC	1 cut(s)	17
LpnPI	CCDG	6 cut(s)	44, 174, 204, 246, 261, 269
Lsp1109I	GCAGC	1 cut(s)	7
LweI	GCATC	1 cut(s)	150
MaeII	ACGT	2 cut(s)	78, 223
MalI	GATC	1 cut(s)	167
MboI	GATC	1 cut(s)	165
MluCI	AATT	1 cut(s)	151
MlyI	GAGTC	1 cut(s)	224
MnlI	CCTC	5 cut(s)	3, 66, 189, 201, 272
MvnI	CGCG	1 cut(s)	48
NcoI	CCATGG	1 cut(s)	69
NdeII	GATC	1 cut(s)	165
NlaIII	CATG	2 cut(s)	73, 205
NruI	TCGCGA	1 cut(s)	48
PcsI	WCGNNNNNNNCGW	1 cut(s)	245
PfeI	GAWTC	1 cut(s)	121
PkrI	GCNGC	1 cut(s)	22
PleI	GAGTC	1 cut(s)	224
PpsI	GAGTC	1 cut(s)	224
RruI	TCGCGA	1 cut(s)	48
SatI	GCNGC	1 cut(s)	21
Sau3AI	GATC	1 cut(s)	165
SchI	GAGTC	1 cut(s)	224
SetI	ASST	8 cut(s)	8, 22, 46, 81, 130, 163, 226, 287
SfaNI	GCATC	1 cut(s)	150
SfcI	CTRYAG	1 cut(s)	216
Sse9I	AATT	1 cut(s)	151
StyI	CCWWGG	3 cut(s)	63, 69, 265
TaaI	ACNGT	1 cut(s)	237
TaiI	ACGT	2 cut(s)	81, 226
TasI	AATT	1 cut(s)	151
TfiI	GAWTC	1 cut(s)	121
TseI	GCWGC	1 cut(s)	20
XapI	RAATTY	1 cut(s)	151
XcmI	CCANNNNNNNNNTGG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.