Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000795

Physical Location & Seq

Genomic Coordinates Reverse (-)

9043712 .. 9045599

Gene Structure 1888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G15955.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGATCTTACGTTTGATCATAGTTTTGTGAAGGTTAATGGAATCACTATGCACGTCGCCGAGAAAAGCCCCTCCGTCGCCGGGAACGGAGCTATCCGACCTCCGGTGATACTATTCCTCCACGGATTTCCAGAACTTTGGTACACGTGGCGGCATCAGATGGTGGCACTATCTTCGTTAGGTTACCGGACTATAGCGCCGGACCTTCGTGGTTACGGAGACACCGACGCGCCGGAGAGTGTGGACGCGTACACAAGTCTCCACGTGGTTGGAGATCTGATTGGATTGATCGACGCCGTGGTTGGAGATCGGGAAAAGGTGTTCGTAGTGGGACATGATTGGGGCGCTATTATCGCTTGGCATCTCTGTCTTTTTCGACCGGATAGGGTTAAAGCTTTGGTTAACATGAGTGTGGTGTTTGATCCTTGGAATCCTAAACGGAAACCAACCTCGACGTTTAAAGCTTTCTATGGAGATGACTACTACATCTGCAGATTCCAGAACATGGGAGCTGATGGGGTCACTATCAAACGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

178

Amino Acids

19.97

Weight (kDa)

6.64

Isoelectric Point (pI)

28.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	35 - 147	4.7e-23	alpha/beta hydrolase fold
Chlorophyllase	PF07224	35 - 128	1.6e-06	Chlorophyllase
Hydrolase_4	PF12146	36 - 146	2.1e-12	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	37 - 143	9.1e-18	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26740 AT2G26750 AT3G05600 AT3G05600 AT4G15955 AT4G15955
fragaria_vesca	FvH4_2g25390 FvH4_4g18591 FvH4_4g18600 FvH4_4g18600
malus_domestica	MD16G1164900.v1.1 MD16G1165000.v1.1 MD16G1165100.v1.1 MD16G1165300.v1.1 MD16G1165500.v1.1 MD17G1016400.v1.1 MD17G1016500.v1.1
prunus_persica	Prupe.1G124200_v2.0.a1 Prupe.1G124300_v2.0.a1 Prupe.1G124500_v2.0.a1
pyrus_communis	pycom13g14130 pycom16g13960 pycom16g13970 pycom16g13980
rosa_chinensis	RchiOBHm_Chr4g0423281 RchiOBHm_Chr4g0423291 RchiOBHm_Chr4g0423301 RchiOBHm_Chr6g0293571
rosa_laevigata	RLG00000007570 RLG00000007572 RLG00000011940 RLG00000036336
rosa_multiflora	Rmu_co7970336.1_g000001 Rmu_co8074082.1_g000001 Rmu_sc0001290.1_g000009 Rmu_sc0001290.1_g000011 Rmu_sc0002038.1_g000001 Rmu_sc0002038.1_g000010 Rmu_sc0005142.1_g000038 Rmu_sc0006269.1_g000005 Rmu_sc0012160.1_g000002
rosa_roxburghii	Rroxscaffold_5G00365420 Rroxscaffold_5G00365470 Rroxscaffold_5G00365490 Rroxscaffold_7G00174080
rosa_rugosa	Rorug04G0185700 Rorug04G0185800 Rorug04G0185900 Rorug04G0186100 Rorug04G0186200 Rorug06G0236700
rosa_samantha	Rh4AG245400 Rh4AG245500 Rh4AG245600 Rh4BG250700 Rh4BG250900 Rh4BG251000 Rh4CG259000 Rh4CG259200 Rh4CG259400 Rh4DG245400 Rh4DG245600 Rh4DG245700 Rh4DG245800 Rh6CG363400 Rh6DG350300
rosa_wichuraiana	Rw4G021080 Rw4G021090 Rw6G030390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	505
AccII	CGCG	2 cut(s)	230, 248
AciI	CCGC	1 cut(s)	151
AclWI	GGATC	2 cut(s)	12, 416
AcvI	CACGTG	2 cut(s)	147, 265
AcyI	GRCGYC	1 cut(s)	294
AfaI	GTAC	2 cut(s)	143, 251
AfiI	CCNNNNNNNGG	3 cut(s)	81, 103, 505
AflIII	ACRYGT	2 cut(s)	144, 246
AjiI	CACGTC	1 cut(s)	55
AloI	GAACNNNNNNTCC	2 cut(s)	305, 337
AluBI	AGCT	4 cut(s)	92, 395, 464, 512
AluI	AGCT	4 cut(s)	92, 395, 464, 512
Alw26I	GTCTC	2 cut(s)	213, 263
AlwI	GGATC	2 cut(s)	12, 416
AspLEI	GCGC	3 cut(s)	199, 232, 347
AspS9I	GGNCC	1 cut(s)	202
AsuC2I	CCSGG	1 cut(s)	82
AsuHPI	GGTGA	1 cut(s)	118
AvaII	GGWCC	1 cut(s)	202
BbrPI	CACGTG	2 cut(s)	147, 265
BccI	CCATC	2 cut(s)	154, 509
BceAI	ACGGC	1 cut(s)	281
BcgI	CGANNNNNNTGC	2 cut(s)	156, 190
BclI	TGATCA	1 cut(s)	16
BcnI	CCSGG	1 cut(s)	82
BcoDI	GTCTC	2 cut(s)	213, 263
BfmI	CTRYAG	2 cut(s)	192, 490
BfoI	RGCGCY	2 cut(s)	200, 348
BglII	AGATCT	1 cut(s)	274
BisI	GCNGC	1 cut(s)	152
BlsI	GCNGC	1 cut(s)	153
Bme1390I	CCNGG	1 cut(s)	82
Bme18I	GGWCC	1 cut(s)	202
BmgBI	CACGTC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	202
BmrFI	CCNGG	1 cut(s)	82
BmsI	GCATC	2 cut(s)	163, 370
BpuMI	CCSGG	1 cut(s)	82
BsaAI	YACGTR	2 cut(s)	147, 265
BsaHI	GRCGYC	1 cut(s)	294
BsaJI	CCNNGG	3 cut(s)	121, 297, 425
BsaWI	WCCGGW	3 cut(s)	103, 186, 379
BsaXI	ACNNNNNCTCC	2 cut(s)	102, 132
Bsc4I	CCNNNNNNNGG	3 cut(s)	81, 103, 505
BseDI	CCNNGG	3 cut(s)	121, 297, 425
BseLI	CCNNNNNNNGG	3 cut(s)	81, 103, 505
Bsh1236I	CGCG	2 cut(s)	230, 248
Bsh1285I	CGRYCG	1 cut(s)	380
BsiEI	CGRYCG	1 cut(s)	380
BsiSI	CCGG	6 cut(s)	81, 104, 187, 200, 233, 380
BslFI	GGGAC	1 cut(s)	345
BslI	CCNNNNNNNGG	3 cut(s)	81, 103, 505
BsmAI	GTCTC	2 cut(s)	213, 263
BsmFI	GGGAC	1 cut(s)	345
Bsp143I	GATC	6 cut(s)	4, 16, 274, 288, 307, 421
BspACI	CCGC	1 cut(s)	151
BspFNI	CGCG	2 cut(s)	230, 248
BspMAI	CTGCAG	1 cut(s)	494
BspPI	GGATC	2 cut(s)	12, 416
BssECI	CCNNGG	3 cut(s)	121, 297, 425
BssMI	GATC	6 cut(s)	4, 16, 274, 288, 307, 421
BssNI	GRCGYC	1 cut(s)	294
BssT1I	CCWWGG	1 cut(s)	425
BstACI	GRCGYC	1 cut(s)	294
BstBAI	YACGTR	2 cut(s)	147, 265
BstDSI	CCRYGG	2 cut(s)	121, 297
BstEII	GGTNACC	1 cut(s)	182
BstFNI	CGCG	2 cut(s)	230, 248
BstH2I	RGCGCY	2 cut(s)	200, 348
BstHHI	GCGC	3 cut(s)	199, 232, 347
BstKTI	GATC	6 cut(s)	7, 19, 277, 291, 310, 424
BstMAI	GTCTC	2 cut(s)	213, 263
BstMBI	GATC	6 cut(s)	4, 16, 274, 288, 307, 421
BstMCI	CGRYCG	1 cut(s)	380
BstMWI	GCNNNNNNNGC	1 cut(s)	353
BstPI	GGTNACC	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	80
BstSFI	CTRYAG	2 cut(s)	192, 490
BstUI	CGCG	2 cut(s)	230, 248
BstX2I	RGATCY	2 cut(s)	4, 274
BstXI	CCANNNNNNTGG	2 cut(s)	138, 269
BstYI	RGATCY	2 cut(s)	4, 274
BtgI	CCRYGG	2 cut(s)	121, 297
BtrI	CACGTC	1 cut(s)	55
CfoI	GCGC	3 cut(s)	199, 232, 347
Cfr13I	GGNCC	1 cut(s)	202
CseI	GACGC	3 cut(s)	236, 254, 302
Csp6I	GTAC	2 cut(s)	142, 250
CviAII	CATG	3 cut(s)	335, 406, 505
CviJI	RGCY	5 cut(s)	69, 92, 395, 464, 512
CviKI_1	RGCY	5 cut(s)	69, 92, 395, 464, 512
CviQI	GTAC	2 cut(s)	142, 250
DpnI	GATC	6 cut(s)	6, 18, 276, 290, 309, 423
DpnII	GATC	6 cut(s)	4, 16, 274, 288, 307, 421
DraI	TTTAAA	1 cut(s)	460
Eco130I	CCWWGG	1 cut(s)	425
Eco47I	GGWCC	1 cut(s)	202
Eco72I	CACGTG	2 cut(s)	147, 265
Eco91I	GGTNACC	1 cut(s)	182
EcoO65I	GGTNACC	1 cut(s)	182
EcoT14I	CCWWGG	1 cut(s)	425
ErhI	CCWWGG	1 cut(s)	425
FaeI	CATG	3 cut(s)	338, 409, 508
FaiI	YATR	7 cut(s)	21, 50, 194, 336, 407, 471, 506
FaqI	GGGAC	1 cut(s)	345
FatI	CATG	3 cut(s)	334, 405, 504
FbaI	TGATCA	1 cut(s)	16
Fnu4HI	GCNGC	1 cut(s)	152
Fsp4HI	GCNGC	1 cut(s)	152
GlaI	GCGC	3 cut(s)	198, 231, 346
GluI	GCNGC	1 cut(s)	152
HaeII	RGCGCY	2 cut(s)	200, 348
HapII	CCGG	6 cut(s)	81, 104, 187, 200, 233, 380
HgaI	GACGC	3 cut(s)	236, 254, 302
HhaI	GCGC	3 cut(s)	199, 232, 347
Hin1I	GRCGYC	1 cut(s)	294
Hin1II	CATG	3 cut(s)	338, 409, 508
Hin6I	GCGC	3 cut(s)	197, 230, 345
HinP1I	GCGC	3 cut(s)	197, 230, 345
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HindIII	AAGCTT	2 cut(s)	393, 462
HinfI	GANTC	3 cut(s)	42, 430, 495
HpaI	GTTAAC	1 cut(s)	403
HpaII	CCGG	6 cut(s)	81, 104, 187, 200, 233, 380
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	4 cut(s)	144, 244, 252, 403
Hpy188I	TCNGA	3 cut(s)	98, 159, 279
Hpy188III	TCNNGA	3 cut(s)	131, 311, 499
Hpy8I	GTNNAC	4 cut(s)	144, 244, 252, 403
Hpy99I	CGWCG	5 cut(s)	59, 80, 230, 296, 457
HpyAV	CCTTC	2 cut(s)	25, 215
HpyCH4IV	ACGT	5 cut(s)	11, 54, 146, 264, 455
HpyCH4V	TGCA	2 cut(s)	52, 492
HpyF10VI	GCNNNNNNNGC	1 cut(s)	353
HpySE526I	ACGT	5 cut(s)	11, 54, 146, 264, 455
Hsp92I	GRCGYC	1 cut(s)	294
Hsp92II	CATG	3 cut(s)	338, 409, 508
HspAI	GCGC	3 cut(s)	197, 230, 345
Ksp22I	TGATCA	1 cut(s)	16
KspAI	GTTAAC	1 cut(s)	403
Kzo9I	GATC	6 cut(s)	4, 16, 274, 288, 307, 421
LmnI	GCTCC	2 cut(s)	89, 509
LpnPI	CCDG	8 cut(s)	94, 117, 144, 200, 213, 246, 393, 512
LweI	GCATC	2 cut(s)	163, 370
MaeII	ACGT	5 cut(s)	11, 54, 146, 264, 455
MaeIII	GTNAC	3 cut(s)	182, 212, 520
MalI	GATC	6 cut(s)	6, 18, 276, 290, 309, 423
MboI	GATC	6 cut(s)	4, 16, 274, 288, 307, 421
MboII	GAAGA	1 cut(s)	165
MflI	RGATCY	2 cut(s)	4, 274
MluI	ACGCGT	1 cut(s)	246
MmeI	TCCRAC	3 cut(s)	121, 250, 283
MnlI	CCTC	4 cut(s)	82, 111, 128, 460
MseI	TTAA	4 cut(s)	36, 390, 402, 459
MslI	CAYNNNNRTG	1 cut(s)	410
MspI	CCGG	6 cut(s)	81, 104, 187, 200, 233, 380
MspR9I	CCNGG	1 cut(s)	82
MvnI	CGCG	2 cut(s)	230, 248
MwoI	GCNNNNNNNGC	1 cut(s)	353
NciI	CCSGG	1 cut(s)	82
NdeII	GATC	6 cut(s)	4, 16, 274, 288, 307, 421
NlaIII	CATG	3 cut(s)	338, 409, 508
NmeAIII	GCCGAG	1 cut(s)	85
NmuCI	GTSAC	1 cut(s)	520
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PfeI	GAWTC	3 cut(s)	42, 430, 495
PflMI	CCANNNNNTGG	1 cut(s)	505
PkrI	GCNGC	1 cut(s)	153
PmaCI	CACGTG	2 cut(s)	147, 265
PmlI	CACGTG	2 cut(s)	147, 265
Ppu21I	YACGTR	2 cut(s)	147, 265
PspCI	CACGTG	2 cut(s)	147, 265
PspEI	GGTNACC	1 cut(s)	182
PspPI	GGNCC	1 cut(s)	202
PstI	CTGCAG	1 cut(s)	494
PsuI	RGATCY	2 cut(s)	4, 274
RsaI	GTAC	2 cut(s)	143, 251
RsaNI	GTAC	2 cut(s)	142, 250
RseI	CAYNNNNRTG	1 cut(s)	410
SaqAI	TTAA	4 cut(s)	36, 390, 402, 459
SatI	GCNGC	1 cut(s)	152
Sau3AI	GATC	6 cut(s)	4, 16, 274, 288, 307, 421
Sau96I	GGNCC	1 cut(s)	202
ScrFI	CCNGG	1 cut(s)	82
SfaNI	GCATC	2 cut(s)	163, 370
SfcI	CTRYAG	2 cut(s)	192, 490
SinI	GGWCC	1 cut(s)	202
SmiMI	CAYNNNNRTG	1 cut(s)	410
SsiI	CCGC	1 cut(s)	151
StyD4I	CCNGG	1 cut(s)	80
StyI	CCWWGG	1 cut(s)	425
TaiI	ACGT	5 cut(s)	14, 57, 149, 267, 458
TaqI	TCGA	3 cut(s)	291, 376, 452
TauI	GCSGC	1 cut(s)	154
TfiI	GAWTC	3 cut(s)	42, 430, 495
Tru1I	TTAA	4 cut(s)	36, 390, 402, 459
Tru9I	TTAA	4 cut(s)	36, 390, 402, 459
TseFI	GTSAC	1 cut(s)	520
Tsp45I	GTSAC	1 cut(s)	520
TspGWI	ACGGA	5 cut(s)	64, 102, 138, 231, 454
Van91I	CCANNNNNTGG	1 cut(s)	505
VpaK11BI	GGWCC	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.