Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000795

Physical Location & Seq

Genomic Coordinates Reverse (-)

37911146 .. 37912159

Gene Structure 1014 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0236700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGACATTGCTCACCATCAATGCTTTCGATCGATGCTCTGTGAGTTGGAACGGTCTACTATGGAGGTCTGTTGATACCTCGTCCCAGATCCCACTACGTGATGATGATGCTCTTAAGATCGAATTTATGTTCCTCAACGAAACCCAACACGCTTTTACACCAGATAGAGATACTCAAGATCAGATAAAAACAAAGAGAGATACTCAAGAAACTTGGGTGATCCCCCACACAACAACAACAAAGGCCATTACAGTCCGTCCTTCCGAGTTATACAACCACGATTCTACTAGGATTGAAATAATGCATCATCGTGATGATGAAGTGACTAGAGCGGACCTACATAATCGTTTTGAAGCGACGAAACTCGGGACATGTGCTATTTGTTTGGATGACTTTGAGGTTGGACGTAACACTAGTCGATTGCCTTGCTTGCACGTTTTTCATGGACCTTGCATTGTTAAGTGGCTGGAGATCGATCCTCATTGTCCTCTTTGCCGATGTTCTCTGGCCCCTGAACTAGCACCATGGTTTAATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001676 GO:0002532 GO:0002538 GO:0002539 GO:0003008 GO:0003013 GO:0003674 GO:0003824 GO:0004301 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006954 GO:0007600 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016801 GO:0016803 GO:0019233 GO:0019752 GO:0030258 GO:0032501 GO:0032787 GO:0033559 GO:0042577 GO:0042578 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043651 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045777 GO:0046839 GO:0046872 GO:0050877 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

179

Amino Acids

20.69

Weight (kDa)

5.66

Isoelectric Point (pI)

32.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	124 - 166	6e-15	Ring finger domain
zf-C3HC4_2	PF13923	125 - 165	5.6e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	125 - 152	1.3e-09	RING-like zinc finger
zf-C3HC4	PF00097	125 - 165	1.4e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	125 - 163	1e-05	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0000795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26740 AT2G26750 AT3G05600 AT3G05600 AT4G15955 AT4G15955
fragaria_vesca	FvH4_2g25390 FvH4_4g18591 FvH4_4g18600 FvH4_4g18600
malus_domestica	MD16G1164900.v1.1 MD16G1165000.v1.1 MD16G1165100.v1.1 MD16G1165300.v1.1 MD16G1165500.v1.1 MD17G1016400.v1.1 MD17G1016500.v1.1
prunus_persica	Prupe.1G124200_v2.0.a1 Prupe.1G124300_v2.0.a1 Prupe.1G124500_v2.0.a1
pyrus_communis	pycom13g14130 pycom16g13960 pycom16g13970 pycom16g13980
rosa_chinensis	RchiOBHm_Chr4g0423281 RchiOBHm_Chr4g0423291 RchiOBHm_Chr4g0423301 RchiOBHm_Chr6g0293571
rosa_laevigata	RLG00000007570 RLG00000007572 RLG00000011940 RLG00000036336
rosa_multiflora	Rmu_co7970336.1_g000001 Rmu_co8074082.1_g000001 Rmu_sc0001290.1_g000009 Rmu_sc0001290.1_g000011 Rmu_sc0002038.1_g000001 Rmu_sc0002038.1_g000010 Rmu_sc0005142.1_g000038 Rmu_sc0006269.1_g000005 Rmu_sc0012160.1_g000002
rosa_roxburghii	Rroxscaffold_5G00365420 Rroxscaffold_5G00365470 Rroxscaffold_5G00365490 Rroxscaffold_7G00174080
rosa_rugosa	Rorug04G0185700 Rorug04G0185800 Rorug04G0185900 Rorug04G0186100 Rorug04G0186200 Rorug06G0236700
rosa_samantha	Rh4AG245400 Rh4AG245500 Rh4AG245600 Rh4BG250700 Rh4BG250900 Rh4BG251000 Rh4CG259000 Rh4CG259200 Rh4CG259400 Rh4DG245400 Rh4DG245600 Rh4DG245700 Rh4DG245800 Rh6CG363400 Rh6DG350300
rosa_wichuraiana	Rw4G021080 Rw4G021090 Rw6G030390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	332
AccI	GTMKAC	1 cut(s)	55
AciI	CCGC	1 cut(s)	332
AclWI	GGATC	3 cut(s)	82, 214, 470
AcsI	RAATTY	1 cut(s)	122
AdeI	CACNNNGTG	1 cut(s)	98
AflII	CTTAAG	1 cut(s)	113
AflIII	ACRYGT	1 cut(s)	371
AgsI	TTSAA	2 cut(s)	296, 353
AhlI	ACTAGT	1 cut(s)	413
AlwI	GGATC	3 cut(s)	82, 214, 470
Ama87I	CYCGRG	1 cut(s)	365
AoxI	GGCC	2 cut(s)	243, 507
ApoI	RAATTY	1 cut(s)	122
AspS9I	GGNCC	3 cut(s)	334, 446, 508
AsuHPI	GGTGA	2 cut(s)	4, 229
AvaI	CYCGRG	1 cut(s)	365
AvaII	GGWCC	2 cut(s)	334, 446
BccI	CCATC	1 cut(s)	23
BcgI	CGANNNNNNTGC	2 cut(s)	408, 442
BcuI	ACTAGT	1 cut(s)	413
BfaI	CTAG	4 cut(s)	288, 327, 414, 518
BfrI	CTTAAG	1 cut(s)	113
Bme18I	GGWCC	2 cut(s)	334, 446
BmeT110I	CYCGRG	1 cut(s)	365
BmgT120I	GGNCC	3 cut(s)	334, 446, 508
BmiI	GGNNCC	1 cut(s)	510
BmsI	GCATC	3 cut(s)	23, 97, 313
BplI	GAGNNNNNCTC	2 cut(s)	187, 219
BpmI	CTGGAG	1 cut(s)	488
BpuEI	CTTGAG	2 cut(s)	159, 189
Bsa29I	ATCGAT	2 cut(s)	31, 474
BsaAI	YACGTR	1 cut(s)	98
BsaJI	CCNNGG	1 cut(s)	524
Bse3DI	GCAATG	1 cut(s)	5
BseCI	ATCGAT	2 cut(s)	31, 474
BseDI	CCNNGG	1 cut(s)	524
BseGI	GGATG	1 cut(s)	394
BseMI	GCAATG	1 cut(s)	5
Bsh1285I	CGRYCG	1 cut(s)	31
BshFI	GGCC	2 cut(s)	245, 509
BshVI	ATCGAT	2 cut(s)	31, 474
BsiEI	CGRYCG	1 cut(s)	31
BsiHKCI	CYCGRG	1 cut(s)	365
BslFI	GGGAC	2 cut(s)	67, 382
BsmFI	GGGAC	2 cut(s)	67, 382
BsnI	GGCC	2 cut(s)	245, 509
BsoBI	CYCGRG	1 cut(s)	365
Bsp143I	GATC	7 cut(s)	28, 87, 117, 178, 219, 471, 475
Bsp19I	CCATGG	1 cut(s)	524
BspACI	CCGC	1 cut(s)	332
BspANI	GGCC	2 cut(s)	245, 509
BspDI	ATCGAT	2 cut(s)	31, 474
BspLI	GGNNCC	1 cut(s)	510
BspPI	GGATC	3 cut(s)	82, 214, 470
BspTI	CTTAAG	1 cut(s)	113
BsrBI	CCGCTC	1 cut(s)	332
BsrDI	GCAATG	1 cut(s)	5
BssECI	CCNNGG	1 cut(s)	524
BssMI	GATC	7 cut(s)	28, 87, 117, 178, 219, 471, 475
BssT1I	CCWWGG	1 cut(s)	524
Bst4CI	ACNGT	2 cut(s)	53, 253
BstAFI	CTTAAG	1 cut(s)	113
BstBAI	YACGTR	1 cut(s)	98
BstC8I	GCNNGC	1 cut(s)	431
BstDSI	CCRYGG	1 cut(s)	524
BstF5I	GGATG	1 cut(s)	394
BstKTI	GATC	7 cut(s)	31, 90, 120, 181, 222, 474, 478
BstMBI	GATC	7 cut(s)	28, 87, 117, 178, 219, 471, 475
BstMCI	CGRYCG	1 cut(s)	31
BstMWI	GCNNNNNNNGC	1 cut(s)	430
BstNSI	RCATGY	1 cut(s)	375
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
Bsu15I	ATCGAT	2 cut(s)	31, 474
BsuRI	GGCC	2 cut(s)	245, 509
BsuTUI	ATCGAT	2 cut(s)	31, 474
BtgI	CCRYGG	1 cut(s)	524
BtsCI	GGATG	1 cut(s)	394
Cac8I	GCNNGC	1 cut(s)	431
Cfr13I	GGNCC	3 cut(s)	334, 446, 508
ClaI	ATCGAT	2 cut(s)	31, 474
CviAII	CATG	3 cut(s)	372, 443, 525
CviJI	RGCY	3 cut(s)	245, 466, 509
CviKI_1	RGCY	3 cut(s)	245, 466, 509
DpnI	GATC	7 cut(s)	30, 89, 119, 180, 221, 473, 477
DpnII	GATC	7 cut(s)	28, 87, 117, 178, 219, 471, 475
DraIII	CACNNNGTG	1 cut(s)	98
Eco130I	CCWWGG	1 cut(s)	524
Eco47I	GGWCC	2 cut(s)	334, 446
Eco88I	CYCGRG	1 cut(s)	365
EcoT14I	CCWWGG	1 cut(s)	524
EcoT22I	ATGCAT	2 cut(s)	306, 538
ErhI	CCWWGG	1 cut(s)	524
FaeI	CATG	3 cut(s)	375, 446, 528
FaiI	YATR	8 cut(s)	61, 128, 271, 342, 373, 444, 526, 538
FaqI	GGGAC	2 cut(s)	67, 382
FatI	CATG	3 cut(s)	371, 442, 524
FblI	GTMKAC	1 cut(s)	55
FokI	GGATG	1 cut(s)	401
FspBI	CTAG	4 cut(s)	288, 327, 414, 518
GsuI	CTGGAG	1 cut(s)	488
HaeIII	GGCC	2 cut(s)	245, 509
Hin1II	CATG	3 cut(s)	375, 446, 528
HinfI	GANTC	1 cut(s)	281
HphI	GGTGA	2 cut(s)	4, 229
Hpy166II	GTNNAC	1 cut(s)	56
Hpy188I	TCNGA	2 cut(s)	183, 265
Hpy188III	TCNNGA	4 cut(s)	176, 206, 311, 367
Hpy8I	GTNNAC	1 cut(s)	56
Hpy99I	CGWCG	1 cut(s)	361
HpyAV	CCTTC	1 cut(s)	270
HpyCH4III	ACNGT	2 cut(s)	53, 253
HpyCH4IV	ACGT	3 cut(s)	97, 406, 435
HpyCH4V	TGCA	4 cut(s)	304, 433, 453, 536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	430
HpySE526I	ACGT	3 cut(s)	97, 406, 435
Hsp92II	CATG	3 cut(s)	375, 446, 528
Kzo9I	GATC	7 cut(s)	28, 87, 117, 178, 219, 471, 475
LpnPI	CCDG	5 cut(s)	98, 174, 452, 491, 525
LweI	GCATC	3 cut(s)	23, 97, 313
MaeI	CTAG	4 cut(s)	288, 327, 414, 518
MaeII	ACGT	3 cut(s)	97, 406, 435
MaeIII	GTNAC	2 cut(s)	322, 407
MalI	GATC	7 cut(s)	30, 89, 119, 180, 221, 473, 477
MbiI	CCGCTC	1 cut(s)	332
MboI	GATC	7 cut(s)	28, 87, 117, 178, 219, 471, 475
MflI	RGATCY	1 cut(s)	87
MluCI	AATT	1 cut(s)	122
MmeI	TCCRAC	2 cut(s)	26, 382
MnlI	CCTC	6 cut(s)	57, 88, 143, 391, 489, 498
Mph1103I	ATGCAT	2 cut(s)	306, 538
MseI	TTAA	3 cut(s)	114, 459, 531
MslI	CAYNNNNRTG	2 cut(s)	309, 312
MspCI	CTTAAG	1 cut(s)	113
MwoI	GCNNNNNNNGC	1 cut(s)	430
NcoI	CCATGG	1 cut(s)	524
NdeII	GATC	7 cut(s)	28, 87, 117, 178, 219, 471, 475
NlaIII	CATG	3 cut(s)	375, 446, 528
NlaIV	GGNNCC	1 cut(s)	510
NmuCI	GTSAC	1 cut(s)	322
NsiI	ATGCAT	2 cut(s)	306, 538
NspI	RCATGY	1 cut(s)	375
PciI	ACATGT	1 cut(s)	371
PfeI	GAWTC	1 cut(s)	281
Ple19I	CGATCG	1 cut(s)	31
Ppu21I	YACGTR	1 cut(s)	98
PscI	ACATGT	1 cut(s)	371
PspN4I	GGNNCC	1 cut(s)	510
PspPI	GGNCC	3 cut(s)	334, 446, 508
PsuI	RGATCY	1 cut(s)	87
PvuI	CGATCG	1 cut(s)	31
RseI	CAYNNNNRTG	2 cut(s)	309, 312
SaqAI	TTAA	3 cut(s)	114, 459, 531
Sau3AI	GATC	7 cut(s)	28, 87, 117, 178, 219, 471, 475
Sau96I	GGNCC	3 cut(s)	334, 446, 508
SetI	ASST	8 cut(s)	68, 80, 100, 339, 402, 409, 438, 451
SfaNI	GCATC	3 cut(s)	23, 97, 313
SinI	GGWCC	2 cut(s)	334, 446
SmiMI	CAYNNNNRTG	2 cut(s)	309, 312
SmlI	CTYRAG	3 cut(s)	113, 174, 204
SmoI	CTYRAG	3 cut(s)	113, 174, 204
SpeI	ACTAGT	1 cut(s)	413
Sse9I	AATT	1 cut(s)	122
SsiI	CCGC	1 cut(s)	332
SspMI	CTAG	4 cut(s)	288, 327, 414, 518
StyI	CCWWGG	1 cut(s)	524
TaaI	ACNGT	2 cut(s)	53, 253
TaiI	ACGT	3 cut(s)	100, 409, 438
TaqI	TCGA	5 cut(s)	27, 31, 120, 418, 474
TasI	AATT	1 cut(s)	122
TfiI	GAWTC	1 cut(s)	281
Tru1I	TTAA	3 cut(s)	114, 459, 531
Tru9I	TTAA	3 cut(s)	114, 459, 531
TseFI	GTSAC	1 cut(s)	322
Tsp45I	GTSAC	1 cut(s)	322
TspDTI	ATGAA	2 cut(s)	333, 431
TspGWI	ACGGA	1 cut(s)	245
Vha464I	CTTAAG	1 cut(s)	113
VpaK11BI	GGWCC	2 cut(s)	334, 446
XapI	RAATTY	1 cut(s)	122
XceI	RCATGY	1 cut(s)	375
XmiI	GTMKAC	1 cut(s)	55
XspI	CTAG	4 cut(s)	288, 327, 414, 518
Zsp2I	ATGCAT	2 cut(s)	306, 538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.