Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001290.1

Orthogroup ID

OG0000795

Physical Location & Seq

Genomic Coordinates Reverse (-)

25315 .. 28394

Gene Structure 3080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001290.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

atggcgggattttttgttctccccttatttcttgcttcttctcttgatggcggcaaagtagacagtgttgacggcattgcccggcttcaagcaccagagaaatcggattttggcttctcgacttcgtggggacataaggagcctggagagatagaagccgagttcgcccaaattggtactgcaagagttattacggaattcttgaccttacgccaccctggtccgcttttcctccctaaaggtaaaggcttcggacatcccccagatgccccgatcgccttaccaagttggttgtctgaggatgatgttaactactatgtcagcaaatttgagaagaagggcttcactggtggcttaaactactaccgaaactttgaccgaaattgggaactctttgcaccctggactggcactcaagtgaaagttccagttaagttcattgtgggagaccaagaccttgtttataattctcttggcgccaaagatttcatacacaacggcaggttcaagaaatatgtgccgttcttggaagaggtggttgtaatggaaggagttgcccattttagtaaccaagaaaaggccgatgaaatcagtgaacacattcacgacttcatcaagaaattctactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001676 GO:0002532 GO:0002538 GO:0002539 GO:0003008 GO:0003013 GO:0003674 GO:0003824 GO:0004301 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006954 GO:0007600 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016801 GO:0016803 GO:0019233 GO:0019752 GO:0030258 GO:0032501 GO:0032787 GO:0033559 GO:0042577 GO:0042578 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043651 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045777 GO:0046839 GO:0046872 GO:0050877 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

209

Amino Acids

23.54

Weight (kDa)

5.64

Isoelectric Point (pI)

32.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26740 AT2G26750 AT3G05600 AT3G05600 AT4G15955 AT4G15955
fragaria_vesca	FvH4_2g25390 FvH4_4g18591 FvH4_4g18600 FvH4_4g18600
malus_domestica	MD16G1164900.v1.1 MD16G1165000.v1.1 MD16G1165100.v1.1 MD16G1165300.v1.1 MD16G1165500.v1.1 MD17G1016400.v1.1 MD17G1016500.v1.1
prunus_persica	Prupe.1G124200_v2.0.a1 Prupe.1G124300_v2.0.a1 Prupe.1G124500_v2.0.a1
pyrus_communis	pycom13g14130 pycom16g13960 pycom16g13970 pycom16g13980
rosa_chinensis	RchiOBHm_Chr4g0423281 RchiOBHm_Chr4g0423291 RchiOBHm_Chr4g0423301 RchiOBHm_Chr6g0293571
rosa_laevigata	RLG00000007570 RLG00000007572 RLG00000011940 RLG00000036336
rosa_multiflora	Rmu_co7970336.1_g000001 Rmu_co8074082.1_g000001 Rmu_sc0001290.1_g000009 Rmu_sc0001290.1_g000011 Rmu_sc0002038.1_g000001 Rmu_sc0002038.1_g000010 Rmu_sc0005142.1_g000038 Rmu_sc0006269.1_g000005 Rmu_sc0012160.1_g000002
rosa_roxburghii	Rroxscaffold_5G00365420 Rroxscaffold_5G00365470 Rroxscaffold_5G00365490 Rroxscaffold_7G00174080
rosa_rugosa	Rorug04G0185700 Rorug04G0185800 Rorug04G0185900 Rorug04G0186100 Rorug04G0186200 Rorug06G0236700
rosa_samantha	Rh4AG245400 Rh4AG245500 Rh4AG245600 Rh4BG250700 Rh4BG250900 Rh4BG251000 Rh4CG259000 Rh4CG259200 Rh4CG259400 Rh4DG245400 Rh4DG245600 Rh4DG245700 Rh4DG245800 Rh6CG363400 Rh6DG350300
rosa_wichuraiana	Rw4G021080 Rw4G021090 Rw6G030390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	465
Acc36I	ACCTGC	1 cut(s)	492
AccB1I	GGYRCC	1 cut(s)	476
AccI	GTMKAC	1 cut(s)	60
AciI	CCGC	3 cut(s)	5, 51, 224
AcsI	RAATTY	3 cut(s)	197, 326, 620
AcyI	GRCGYC	1 cut(s)	477
AfaI	GTAC	1 cut(s)	178
AfiI	CCNNNNNNNGG	3 cut(s)	385, 407, 577
AgsI	TTSAA	2 cut(s)	89, 508
AjnI	CCWGG	3 cut(s)	142, 217, 401
AleI	CACNNNNGTG	1 cut(s)	416
AloI	GAACNNNNNNTCC	1 cut(s)	32
Alw26I	GTCTC	1 cut(s)	441
AoxI	GGCC	1 cut(s)	579
ApoI	RAATTY	3 cut(s)	197, 326, 620
Asp700I	GAANNNNTTC	2 cut(s)	341, 600
AspLEI	GCGC	1 cut(s)	479
AspS9I	GGNCC	1 cut(s)	221
AsuC2I	CCSGG	1 cut(s)	82
AvaII	GGWCC	1 cut(s)	221
BanI	GGYRCC	1 cut(s)	476
BccI	CCATC	1 cut(s)	41
BceAI	ACGGC	3 cut(s)	88, 505, 514
BciT130I	CCWGG	3 cut(s)	144, 219, 403
BcnI	CCSGG	1 cut(s)	82
BcoDI	GTCTC	1 cut(s)	441
BfoI	RGCGCY	1 cut(s)	480
BfuAI	ACCTGC	1 cut(s)	492
BisI	GCNGC	1 cut(s)	52
BlsI	GCNGC	1 cut(s)	53
Bme1390I	CCNGG	4 cut(s)	82, 144, 219, 403
Bme18I	GGWCC	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	2 cut(s)	141, 478
BmrFI	CCNGG	4 cut(s)	82, 144, 219, 403
BmsI	GCATC	1 cut(s)	256
BpmI	CTGGAG	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	399
BpuMI	CCSGG	1 cut(s)	82
BsaHI	GRCGYC	1 cut(s)	477
BsaI	GGTCTC	1 cut(s)	441
BsaJI	CCNNGG	2 cut(s)	217, 401
Bsc4I	CCNNNNNNNGG	3 cut(s)	385, 407, 577
Bse1I	ACTGG	3 cut(s)	352, 412, 428
Bse3DI	GCAATG	1 cut(s)	75
BseBI	CCWGG	3 cut(s)	144, 219, 403
BseDI	CCNNGG	2 cut(s)	217, 401
BseGI	GGATG	2 cut(s)	256, 307
BseLI	CCNNNNNNNGG	3 cut(s)	385, 407, 577
BseMI	GCAATG	1 cut(s)	75
BseMII	CTCAG	1 cut(s)	288
BseNI	ACTGG	3 cut(s)	352, 412, 428
Bsh1285I	CGRYCG	1 cut(s)	276
BshFI	GGCC	1 cut(s)	581
BshNI	GGYRCC	1 cut(s)	476
BsiEI	CGRYCG	1 cut(s)	276
BsiSI	CCGG	1 cut(s)	82
BslFI	GGGAC	1 cut(s)	144
BslI	CCNNNNNNNGG	3 cut(s)	385, 407, 577
BsmAI	GTCTC	1 cut(s)	441
BsmFI	GGGAC	1 cut(s)	144
BsnI	GGCC	1 cut(s)	581
Bso31I	GGTCTC	1 cut(s)	441
Bsp143I	GATC	1 cut(s)	273
BspACI	CCGC	3 cut(s)	5, 51, 224
BspANI	GGCC	1 cut(s)	581
BspCNI	CTCAG	1 cut(s)	289
BspLI	GGNNCC	2 cut(s)	141, 478
BspMI	ACCTGC	1 cut(s)	492
BspT107I	GGYRCC	1 cut(s)	476
BspTNI	GGTCTC	1 cut(s)	441
BsrDI	GCAATG	1 cut(s)	75
BsrI	ACTGG	3 cut(s)	352, 412, 428
BssECI	CCNNGG	2 cut(s)	217, 401
BssMI	GATC	1 cut(s)	273
BssNI	GRCGYC	1 cut(s)	477
Bst2UI	CCWGG	3 cut(s)	144, 219, 403
Bst4CI	ACNGT	1 cut(s)	65
Bst6I	CTCTTC	1 cut(s)	525
BstACI	GRCGYC	1 cut(s)	477
BstDEI	CTNAG	1 cut(s)	297
BstF5I	GGATG	2 cut(s)	256, 307
BstH2I	RGCGCY	1 cut(s)	480
BstHHI	GCGC	1 cut(s)	479
BstKTI	GATC	1 cut(s)	276
BstMAI	GTCTC	1 cut(s)	441
BstMBI	GATC	1 cut(s)	273
BstMCI	CGRYCG	1 cut(s)	276
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 275
BstNI	CCWGG	3 cut(s)	144, 219, 403
BstSCI	CCNGG	4 cut(s)	80, 142, 217, 401
BsuRI	GGCC	1 cut(s)	581
BtsCI	GGATG	2 cut(s)	256, 307
BtsIMutI	CAGTG	3 cut(s)	70, 345, 598
BveI	ACCTGC	1 cut(s)	492
CfoI	GCGC	1 cut(s)	479
Cfr13I	GGNCC	1 cut(s)	221
Csp6I	GTAC	1 cut(s)	177
CviJI	RGCY	8 cut(s)	85, 114, 142, 158, 249, 342, 354, 581
CviKI_1	RGCY	8 cut(s)	85, 114, 142, 158, 249, 342, 354, 581
CviQI	GTAC	1 cut(s)	177
DdeI	CTNAG	1 cut(s)	297
DinI	GGCGCC	1 cut(s)	478
DpnI	GATC	1 cut(s)	275
DpnII	GATC	1 cut(s)	273
Eam1104I	CTCTTC	1 cut(s)	525
EarI	CTCTTC	1 cut(s)	525
Eco31I	GGTCTC	1 cut(s)	441
Eco47I	GGWCC	1 cut(s)	221
EcoRI	GAATTC	1 cut(s)	197
EcoRII	CCWGG	3 cut(s)	142, 217, 401
EgeI	GGCGCC	1 cut(s)	478
EheI	GGCGCC	1 cut(s)	478
FaiI	YATR	5 cut(s)	135, 318, 465, 491, 516
FalI	AAGNNNNNCTT	2 cut(s)	326, 358
FaqI	GGGAC	1 cut(s)	144
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	1 cut(s)	52
FokI	GGATG	2 cut(s)	243, 314
Fsp4HI	GCNGC	1 cut(s)	52
GlaI	GCGC	1 cut(s)	478
GluI	GCNGC	1 cut(s)	52
GsuI	CTGGAG	1 cut(s)	165
HaeII	RGCGCY	1 cut(s)	480
HaeIII	GGCC	1 cut(s)	581
HapII	CCGG	1 cut(s)	82
HhaI	GCGC	1 cut(s)	479
Hin1I	GRCGYC	1 cut(s)	477
Hin6I	GCGC	1 cut(s)	477
HinP1I	GCGC	1 cut(s)	477
HincII	GTYRAC	2 cut(s)	70, 310
HindII	GTYRAC	2 cut(s)	70, 310
HpaI	GTTAAC	1 cut(s)	310
HpaII	CCGG	1 cut(s)	82
Hpy166II	GTNNAC	4 cut(s)	61, 70, 310, 596
Hpy188I	TCNGA	3 cut(s)	106, 254, 298
Hpy188III	TCNNGA	6 cut(s)	44, 118, 202, 508, 605, 616
Hpy8I	GTNNAC	4 cut(s)	61, 70, 310, 596
HpyAV	CCTTC	2 cut(s)	331, 542
HpyCH4III	ACNGT	1 cut(s)	65
HpyCH4V	TGCA	2 cut(s)	182, 398
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 275
HpyF3I	CTNAG	1 cut(s)	297
Hsp92I	GRCGYC	1 cut(s)	477
HspAI	GCGC	1 cut(s)	477
KasI	GGCGCC	1 cut(s)	476
KspAI	GTTAAC	1 cut(s)	310
Kzo9I	GATC	1 cut(s)	273
LmnI	GCTCC	1 cut(s)	139
LweI	GCATC	1 cut(s)	256
MaeIII	GTNAC	1 cut(s)	566
MalI	GATC	1 cut(s)	275
MboI	GATC	1 cut(s)	273
MboII	GAAGA	3 cut(s)	30, 346, 542
MluCI	AATT	6 cut(s)	171, 197, 326, 382, 466, 620
Mly113I	GGCGCC	1 cut(s)	477
MnlI	CCTC	3 cut(s)	242, 292, 526
MroXI	GAANNNNTTC	2 cut(s)	341, 600
MseI	TTAA	3 cut(s)	309, 356, 432
MslI	CAYNNNNRTG	1 cut(s)	416
MspI	CCGG	1 cut(s)	82
MspR9I	CCNGG	4 cut(s)	82, 144, 219, 403
MvaI	CCWGG	3 cut(s)	144, 219, 403
MwoI	GCNNNNNNNGC	2 cut(s)	164, 275
NarI	GGCGCC	1 cut(s)	477
NciI	CCSGG	1 cut(s)	82
NdeII	GATC	1 cut(s)	273
NlaIV	GGNNCC	2 cut(s)	141, 478
NmeAIII	GCCGAG	1 cut(s)	184
OliI	CACNNNNGTG	1 cut(s)	416
PdmI	GAANNNNTTC	2 cut(s)	341, 600
PkrI	GCNGC	1 cut(s)	53
Ple19I	CGATCG	1 cut(s)	276
PluTI	GGCGCC	1 cut(s)	480
PsiI	TTATAA	1 cut(s)	465
Psp6I	CCWGG	3 cut(s)	142, 217, 401
PspGI	CCWGG	3 cut(s)	142, 217, 401
PspN4I	GGNNCC	2 cut(s)	141, 478
PspPI	GGNCC	1 cut(s)	221
PvuI	CGATCG	1 cut(s)	276
RsaI	GTAC	1 cut(s)	178
RsaNI	GTAC	1 cut(s)	177
RseI	CAYNNNNRTG	1 cut(s)	416
SaqAI	TTAA	3 cut(s)	309, 356, 432
SatI	GCNGC	1 cut(s)	52
Sau3AI	GATC	1 cut(s)	273
Sau96I	GGNCC	1 cut(s)	221
ScrFI	CCNGG	4 cut(s)	82, 144, 219, 403
SetI	ASST	5 cut(s)	209, 244, 459, 506, 537
SfaNI	GCATC	1 cut(s)	256
SfoI	GGCGCC	1 cut(s)	478
SinI	GGWCC	1 cut(s)	221
SmiMI	CAYNNNNRTG	1 cut(s)	416
SmlI	CTYRAG	1 cut(s)	414
SmoI	CTYRAG	1 cut(s)	414
Sse9I	AATT	6 cut(s)	171, 197, 326, 382, 466, 620
SsiI	CCGC	3 cut(s)	5, 51, 224
SspDI	GGCGCC	1 cut(s)	476
StyD4I	CCNGG	4 cut(s)	80, 142, 217, 401
TaaI	ACNGT	1 cut(s)	65
TaqI	TCGA	1 cut(s)	119
TaqII	GACCGA	1 cut(s)	393
TasI	AATT	6 cut(s)	171, 197, 326, 382, 466, 620
TauI	GCSGC	1 cut(s)	54
Tru1I	TTAA	3 cut(s)	309, 356, 432
Tru9I	TTAA	3 cut(s)	309, 356, 432
TscAI	CASTG	3 cut(s)	70, 352, 598
TspDTI	ATGAA	4 cut(s)	427, 478, 600, 601
TspGWI	ACGGA	1 cut(s)	209
TspRI	CASTG	3 cut(s)	70, 352, 598
VpaK11BI	GGWCC	1 cut(s)	221
XapI	RAATTY	3 cut(s)	197, 326, 620
XmiI	GTMKAC	1 cut(s)	60
XmnI	GAANNNNTTC	2 cut(s)	341, 600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.