Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0000795

Physical Location & Seq

Genomic Coordinates Forward (+)

10019934 .. 10020480

Gene Structure 547 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g13980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGGCACTACAAGAGCTATCAAGGAGTTTCTAACATATAGGAATCCGGGTCCAGCTTTCCTGCCTAAAGGGAAAGGATTTGAACGTCCGACAGATGCTCCTATTGTCTTGCCAAGTTGGTTGTCTGAGGATGACGTGAAATACTACGCCACCAAATTTGACAAGACGGGCTTCACCGGCCCCGTAAACTACTATCGGAATTTGGACGTAAACTGGGAACTAACTGCCCCATGGACTGAGGCTCAAGTGAAAGTTCCAGTGAAGTTTATTGTGGGAGACCAGGACCTCACTTACAACTCTCTAGGTGCTCAGGACTTCATACACAAAGGCGGGTTCAAGAAATATGTGCCGCTTCTGGAAGAAGTAGTTGTACTGGAAGGAGTTGCCCATTTTCTGCAACAAGAGAAGCCTGATGAAATCAGCAAACACATTCACGACTTCGTCAAGAAATTCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001676 GO:0002532 GO:0002538 GO:0002539 GO:0003008 GO:0003013 GO:0003674 GO:0003824 GO:0004301 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006954 GO:0007600 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016801 GO:0016803 GO:0019233 GO:0019752 GO:0030258 GO:0032501 GO:0032787 GO:0033559 GO:0042577 GO:0042578 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043651 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045777 GO:0046839 GO:0046872 GO:0050877 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

153

Amino Acids

17.4

Weight (kDa)

6.51

Isoelectric Point (pI)

34.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26740 AT2G26750 AT3G05600 AT3G05600 AT4G15955 AT4G15955
fragaria_vesca	FvH4_2g25390 FvH4_4g18591 FvH4_4g18600 FvH4_4g18600
malus_domestica	MD16G1164900.v1.1 MD16G1165000.v1.1 MD16G1165100.v1.1 MD16G1165300.v1.1 MD16G1165500.v1.1 MD17G1016400.v1.1 MD17G1016500.v1.1
prunus_persica	Prupe.1G124200_v2.0.a1 Prupe.1G124300_v2.0.a1 Prupe.1G124500_v2.0.a1
pyrus_communis	pycom13g14130 pycom16g13960 pycom16g13970 pycom16g13980
rosa_chinensis	RchiOBHm_Chr4g0423281 RchiOBHm_Chr4g0423291 RchiOBHm_Chr4g0423301 RchiOBHm_Chr6g0293571
rosa_laevigata	RLG00000007570 RLG00000007572 RLG00000011940 RLG00000036336
rosa_multiflora	Rmu_co7970336.1_g000001 Rmu_co8074082.1_g000001 Rmu_sc0001290.1_g000009 Rmu_sc0001290.1_g000011 Rmu_sc0002038.1_g000001 Rmu_sc0002038.1_g000010 Rmu_sc0005142.1_g000038 Rmu_sc0006269.1_g000005 Rmu_sc0012160.1_g000002
rosa_roxburghii	Rroxscaffold_5G00365420 Rroxscaffold_5G00365470 Rroxscaffold_5G00365490 Rroxscaffold_7G00174080
rosa_rugosa	Rorug04G0185700 Rorug04G0185800 Rorug04G0185900 Rorug04G0186100 Rorug04G0186200 Rorug06G0236700
rosa_samantha	Rh4AG245400 Rh4AG245500 Rh4AG245600 Rh4BG250700 Rh4BG250900 Rh4BG251000 Rh4CG259000 Rh4CG259200 Rh4CG259400 Rh4DG245400 Rh4DG245600 Rh4DG245700 Rh4DG245800 Rh6CG363400 Rh6DG350300
rosa_wichuraiana	Rw4G021080 Rw4G021090 Rw6G030390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	330, 350
AcsI	RAATTY	3 cut(s)	155, 199, 449
AfaI	GTAC	1 cut(s)	372
AgsI	TTSAA	2 cut(s)	83, 337
AjiI	CACGTC	1 cut(s)	136
AjnI	CCWGG	1 cut(s)	279
AluBI	AGCT	2 cut(s)	17, 56
AluI	AGCT	2 cut(s)	17, 56
Alw21I	GWGCWC	1 cut(s)	310
Alw26I	GTCTC	1 cut(s)	270
AoxI	GGCC	1 cut(s)	178
ApoI	RAATTY	3 cut(s)	155, 199, 449
AspS9I	GGNCC	3 cut(s)	50, 179, 283
AsuC2I	CCSGG	1 cut(s)	48
AsuHPI	GGTGA	1 cut(s)	166
AvaII	GGWCC	2 cut(s)	50, 283
BaeGI	GKGCMC	1 cut(s)	8
BarI	GAAGNNNNNNTAC	2 cut(s)	354, 386
Bbv12I	GWGCWC	1 cut(s)	310
BciT130I	CCWGG	1 cut(s)	281
BcnI	CCSGG	1 cut(s)	48
BcoDI	GTCTC	1 cut(s)	270
BfaI	CTAG	1 cut(s)	302
BisI	GCNGC	1 cut(s)	350
BlsI	GCNGC	1 cut(s)	351
Bme1390I	CCNGG	2 cut(s)	48, 281
Bme18I	GGWCC	2 cut(s)	50, 283
BmgBI	CACGTC	1 cut(s)	136
BmgT120I	GGNCC	3 cut(s)	50, 179, 283
BmiI	GGNNCC	2 cut(s)	51, 181
BmrFI	CCNGG	2 cut(s)	48, 281
BmrI	ACTGGG	1 cut(s)	223
BmsI	GCATC	1 cut(s)	85
BmuI	ACTGGG	1 cut(s)	223
Bpu10I	CCTNAGC	1 cut(s)	309
BpuEI	CTTGAG	1 cut(s)	228
BpuMI	CCSGG	1 cut(s)	48
BsaI	GGTCTC	1 cut(s)	270
BsaJI	CCNNGG	1 cut(s)	230
BsaXI	ACNNNNNCTCC	2 cut(s)	82, 112
Bse118I	RCCGGY	1 cut(s)	176
Bse1I	ACTGG	3 cut(s)	218, 257, 378
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	1 cut(s)	230
BseGI	GGATG	1 cut(s)	136
BseMII	CTCAG	3 cut(s)	117, 228, 323
BseNI	ACTGG	3 cut(s)	218, 257, 378
BseSI	GKGCMC	1 cut(s)	8
BshFI	GGCC	1 cut(s)	180
BsiHKAI	GWGCWC	1 cut(s)	310
BsiSI	CCGG	2 cut(s)	47, 177
BsmAI	GTCTC	1 cut(s)	270
BsnI	GGCC	1 cut(s)	180
Bso31I	GGTCTC	1 cut(s)	270
Bsp1286I	GDGCHC	2 cut(s)	8, 310
Bsp19I	CCATGG	1 cut(s)	230
BspACI	CCGC	2 cut(s)	330, 350
BspANI	GGCC	1 cut(s)	180
BspCNI	CTCAG	3 cut(s)	118, 229, 322
BspLI	GGNNCC	2 cut(s)	51, 181
BspTNI	GGTCTC	1 cut(s)	270
BsrFI	RCCGGY	1 cut(s)	176
BsrI	ACTGG	3 cut(s)	218, 257, 378
BssAI	RCCGGY	1 cut(s)	176
BssECI	CCNNGG	1 cut(s)	230
BssT1I	CCWWGG	1 cut(s)	230
Bst2UI	CCWGG	1 cut(s)	281
BstDEI	CTNAG	3 cut(s)	126, 237, 309
BstDSI	CCRYGG	1 cut(s)	230
BstF5I	GGATG	1 cut(s)	136
BstMAI	GTCTC	1 cut(s)	270
BstMWI	GCNNNNNNNGC	1 cut(s)	177
BstNI	CCWGG	1 cut(s)	281
BstSCI	CCNGG	2 cut(s)	46, 279
BstSLI	GKGCMC	1 cut(s)	8
BsuRI	GGCC	1 cut(s)	180
BtgI	CCRYGG	1 cut(s)	230
BtrI	CACGTC	1 cut(s)	136
BtsCI	GGATG	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	264
Cfr10I	RCCGGY	1 cut(s)	176
Cfr13I	GGNCC	3 cut(s)	50, 179, 283
Csp6I	GTAC	1 cut(s)	371
CspCI	CAANNNNNGTGG	2 cut(s)	139, 174
CviAII	CATG	1 cut(s)	231
CviJI	RGCY	6 cut(s)	17, 56, 171, 180, 242, 409
CviKI_1	RGCY	6 cut(s)	17, 56, 171, 180, 242, 409
CviQI	GTAC	1 cut(s)	371
DdeI	CTNAG	3 cut(s)	126, 237, 309
Eco130I	CCWWGG	1 cut(s)	230
Eco31I	GGTCTC	1 cut(s)	270
Eco47I	GGWCC	2 cut(s)	50, 283
EcoO109I	RGGNCCY	1 cut(s)	283
EcoRII	CCWGG	1 cut(s)	279
EcoT14I	CCWWGG	1 cut(s)	230
ErhI	CCWWGG	1 cut(s)	230
FaeI	CATG	1 cut(s)	234
FaiI	YATR	5 cut(s)	37, 39, 232, 320, 345
FalI	AAGNNNNNCTT	2 cut(s)	155, 187
FatI	CATG	1 cut(s)	230
FauI	CCCGC	1 cut(s)	323
Fnu4HI	GCNGC	1 cut(s)	350
FokI	GGATG	1 cut(s)	143
Fsp4HI	GCNGC	1 cut(s)	350
FspBI	CTAG	1 cut(s)	302
GluI	GCNGC	1 cut(s)	350
HaeIII	GGCC	1 cut(s)	180
HapII	CCGG	2 cut(s)	47, 177
Hin1II	CATG	1 cut(s)	234
HinfI	GANTC	1 cut(s)	43
HpaII	CCGG	2 cut(s)	47, 177
HphI	GGTGA	1 cut(s)	166
Hpy166II	GTNNAC	2 cut(s)	187, 211
Hpy188I	TCNGA	3 cut(s)	90, 127, 198
Hpy188III	TCNNGA	5 cut(s)	311, 337, 356, 434, 445
Hpy8I	GTNNAC	2 cut(s)	187, 211
HpyAV	CCTTC	1 cut(s)	371
HpyCH4IV	ACGT	3 cut(s)	85, 135, 207
HpyCH4V	TGCA	1 cut(s)	397
HpyF10VI	GCNNNNNNNGC	1 cut(s)	177
HpyF3I	CTNAG	3 cut(s)	126, 237, 309
HpySE526I	ACGT	3 cut(s)	85, 135, 207
Hsp92II	CATG	1 cut(s)	234
LmnI	GCTCC	1 cut(s)	103
LweI	GCATC	1 cut(s)	85
MaeI	CTAG	1 cut(s)	302
MaeII	ACGT	3 cut(s)	85, 135, 207
MboII	GAAGA	1 cut(s)	371
MhlI	GDGCHC	2 cut(s)	8, 310
MluCI	AATT	3 cut(s)	155, 199, 449
MmeI	TCCRAC	1 cut(s)	113
MnlI	CCTC	3 cut(s)	121, 232, 296
MspI	CCGG	2 cut(s)	47, 177
MspR9I	CCNGG	2 cut(s)	48, 281
MvaI	CCWGG	1 cut(s)	281
MwoI	GCNNNNNNNGC	1 cut(s)	177
NciI	CCSGG	1 cut(s)	48
NcoI	CCATGG	1 cut(s)	230
NlaIII	CATG	1 cut(s)	234
NlaIV	GGNNCC	2 cut(s)	51, 181
PfeI	GAWTC	1 cut(s)	43
PflFI	GACNNNGTC	1 cut(s)	440
PkrI	GCNGC	1 cut(s)	351
PpuMI	RGGWCCY	1 cut(s)	283
Psp5II	RGGWCCY	1 cut(s)	283
Psp6I	CCWGG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	2 cut(s)	51, 181
PspPI	GGNCC	3 cut(s)	50, 179, 283
PspPPI	RGGWCCY	1 cut(s)	283
PsyI	GACNNNGTC	1 cut(s)	440
RsaI	GTAC	1 cut(s)	372
RsaNI	GTAC	1 cut(s)	371
SatI	GCNGC	1 cut(s)	350
Sau96I	GGNCC	3 cut(s)	50, 179, 283
ScrFI	CCNGG	2 cut(s)	48, 281
SduI	GDGCHC	2 cut(s)	8, 310
SetI	ASST	7 cut(s)	19, 58, 88, 138, 210, 288, 307
SfaNI	GCATC	1 cut(s)	85
SinI	GGWCC	2 cut(s)	50, 283
SmlI	CTYRAG	1 cut(s)	243
SmoI	CTYRAG	1 cut(s)	243
Sse9I	AATT	3 cut(s)	155, 199, 449
SsiI	CCGC	2 cut(s)	330, 350
SspMI	CTAG	1 cut(s)	302
StyD4I	CCNGG	2 cut(s)	46, 279
StyI	CCWWGG	1 cut(s)	230
TaiI	ACGT	3 cut(s)	88, 138, 210
TasI	AATT	3 cut(s)	155, 199, 449
TatI	WGTACW	1 cut(s)	370
TauI	GCSGC	1 cut(s)	352
TfiI	GAWTC	1 cut(s)	43
TscAI	CASTG	1 cut(s)	264
TspDTI	ATGAA	2 cut(s)	307, 429
TspRI	CASTG	1 cut(s)	264
Tth111I	GACNNNGTC	1 cut(s)	440
VpaK11BI	GGWCC	2 cut(s)	50, 283
XapI	RAATTY	3 cut(s)	155, 199, 449
XspI	CTAG	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.