Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012160.1

Orthogroup ID

OG0000795

Physical Location & Seq

Genomic Coordinates Forward (+)

6646 .. 7537

Gene Structure 892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012160.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atggagcctggagagatagaagccgagttcgcccaaactggtactgcaagagttattacggaattcttgaccttacgcgaccctggtccgcttttcctccctaaaggtaaaggcttcggacatcccccagatgccccgatcgccttaccaagttggttgtctgaggatgatgttaactactatgtcagcaaatttgagacgaagggcttcactggtggcttaaactactaccgaaactttgaccgaaattgggaactctttgcaccctggaccggcactcaagtgaaagttccagtgaagttcattgtgggagaccaagacctagtttataattctcttggcgccaaggatttcatacacaatggcaggttcaagaaatatgtgccgttcttggaagaggtggttgtaatggaaggagttgcccattttagcaaccaagaaaaggccgatgaaatcagtgaacacattcacgacttcatccagaaattctactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001676 GO:0002532 GO:0002538 GO:0002539 GO:0003008 GO:0003013 GO:0003674 GO:0003824 GO:0004301 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006954 GO:0007600 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016801 GO:0016803 GO:0019233 GO:0019752 GO:0030258 GO:0032501 GO:0032787 GO:0033559 GO:0042577 GO:0042578 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043651 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045777 GO:0046839 GO:0046872 GO:0050877 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

164

Amino Acids

18.74

Weight (kDa)

5.08

Isoelectric Point (pI)

31.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26740 AT2G26750 AT3G05600 AT3G05600 AT4G15955 AT4G15955
fragaria_vesca	FvH4_2g25390 FvH4_4g18591 FvH4_4g18600 FvH4_4g18600
malus_domestica	MD16G1164900.v1.1 MD16G1165000.v1.1 MD16G1165100.v1.1 MD16G1165300.v1.1 MD16G1165500.v1.1 MD17G1016400.v1.1 MD17G1016500.v1.1
prunus_persica	Prupe.1G124200_v2.0.a1 Prupe.1G124300_v2.0.a1 Prupe.1G124500_v2.0.a1
pyrus_communis	pycom13g14130 pycom16g13960 pycom16g13970 pycom16g13980
rosa_chinensis	RchiOBHm_Chr4g0423281 RchiOBHm_Chr4g0423291 RchiOBHm_Chr4g0423301 RchiOBHm_Chr6g0293571
rosa_laevigata	RLG00000007570 RLG00000007572 RLG00000011940 RLG00000036336
rosa_multiflora	Rmu_co7970336.1_g000001 Rmu_co8074082.1_g000001 Rmu_sc0001290.1_g000009 Rmu_sc0001290.1_g000011 Rmu_sc0002038.1_g000001 Rmu_sc0002038.1_g000010 Rmu_sc0005142.1_g000038 Rmu_sc0006269.1_g000005 Rmu_sc0012160.1_g000002
rosa_roxburghii	Rroxscaffold_5G00365420 Rroxscaffold_5G00365470 Rroxscaffold_5G00365490 Rroxscaffold_7G00174080
rosa_rugosa	Rorug04G0185700 Rorug04G0185800 Rorug04G0185900 Rorug04G0186100 Rorug04G0186200 Rorug06G0236700
rosa_samantha	Rh4AG245400 Rh4AG245500 Rh4AG245600 Rh4BG250700 Rh4BG250900 Rh4BG251000 Rh4CG259000 Rh4CG259200 Rh4CG259400 Rh4DG245400 Rh4DG245600 Rh4DG245700 Rh4DG245800 Rh6CG363400 Rh6DG350300
rosa_wichuraiana	Rw4G021080 Rw4G021090 Rw6G030390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	330
Acc36I	ACCTGC	1 cut(s)	357
AccB1I	GGYRCC	1 cut(s)	341
AccII	CGCG	1 cut(s)	78
AciI	CCGC	1 cut(s)	89
AcsI	RAATTY	3 cut(s)	62, 191, 485
AcyI	GRCGYC	1 cut(s)	342
AfaI	GTAC	1 cut(s)	43
AfiI	CCNNNNNNNGG	3 cut(s)	250, 272, 442
AgsI	TTSAA	1 cut(s)	373
AjnI	CCWGG	3 cut(s)	7, 82, 266
AleI	CACNNNNGTG	1 cut(s)	281
Alw26I	GTCTC	2 cut(s)	191, 306
AoxI	GGCC	1 cut(s)	444
ApoI	RAATTY	3 cut(s)	62, 191, 485
Asp700I	GAANNNNTTC	2 cut(s)	206, 465
AspLEI	GCGC	1 cut(s)	344
AspS9I	GGNCC	2 cut(s)	86, 270
AvaII	GGWCC	2 cut(s)	86, 270
BanI	GGYRCC	1 cut(s)	341
BceAI	ACGGC	1 cut(s)	370
BciT130I	CCWGG	3 cut(s)	9, 84, 268
BcoDI	GTCTC	2 cut(s)	191, 306
BfaI	CTAG	1 cut(s)	323
BfoI	RGCGCY	1 cut(s)	345
BfuAI	ACCTGC	1 cut(s)	357
Bme1390I	CCNGG	3 cut(s)	9, 84, 268
Bme18I	GGWCC	2 cut(s)	86, 270
BmgT120I	GGNCC	2 cut(s)	86, 270
BmiI	GGNNCC	2 cut(s)	6, 343
BmrFI	CCNGG	3 cut(s)	9, 84, 268
BmsI	GCATC	1 cut(s)	121
BoxI	GACNNNNGTC	1 cut(s)	84
BpmI	CTGGAG	1 cut(s)	30
BpuEI	CTTGAG	1 cut(s)	264
BsaHI	GRCGYC	1 cut(s)	342
BsaI	GGTCTC	1 cut(s)	306
BsaJI	CCNNGG	3 cut(s)	82, 266, 345
Bsc4I	CCNNNNNNNGG	3 cut(s)	250, 272, 442
Bse118I	RCCGGY	1 cut(s)	272
Bse1I	ACTGG	3 cut(s)	43, 217, 293
BseBI	CCWGG	3 cut(s)	9, 84, 268
BseDI	CCNNGG	3 cut(s)	82, 266, 345
BseGI	GGATG	3 cut(s)	121, 172, 477
BseLI	CCNNNNNNNGG	3 cut(s)	250, 272, 442
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	3 cut(s)	43, 217, 293
Bsh1236I	CGCG	1 cut(s)	78
Bsh1285I	CGRYCG	1 cut(s)	141
BshFI	GGCC	1 cut(s)	446
BshNI	GGYRCC	1 cut(s)	341
BsiEI	CGRYCG	1 cut(s)	141
BsiSI	CCGG	1 cut(s)	273
BslI	CCNNNNNNNGG	3 cut(s)	250, 272, 442
BsmAI	GTCTC	2 cut(s)	191, 306
BsmBI	CGTCTC	1 cut(s)	191
BsnI	GGCC	1 cut(s)	446
Bso31I	GGTCTC	1 cut(s)	306
Bsp143I	GATC	1 cut(s)	138
BspACI	CCGC	1 cut(s)	89
BspANI	GGCC	1 cut(s)	446
BspCNI	CTCAG	1 cut(s)	154
BspFNI	CGCG	1 cut(s)	78
BspLI	GGNNCC	2 cut(s)	6, 343
BspMI	ACCTGC	1 cut(s)	357
BspT107I	GGYRCC	1 cut(s)	341
BspTNI	GGTCTC	1 cut(s)	306
BsrFI	RCCGGY	1 cut(s)	272
BsrI	ACTGG	3 cut(s)	43, 217, 293
BssAI	RCCGGY	1 cut(s)	272
BssECI	CCNNGG	3 cut(s)	82, 266, 345
BssMI	GATC	1 cut(s)	138
BssNI	GRCGYC	1 cut(s)	342
BssT1I	CCWWGG	1 cut(s)	345
Bst2UI	CCWGG	3 cut(s)	9, 84, 268
Bst6I	CTCTTC	1 cut(s)	390
BstACI	GRCGYC	1 cut(s)	342
BstDEI	CTNAG	1 cut(s)	162
BstF5I	GGATG	3 cut(s)	121, 172, 477
BstFNI	CGCG	1 cut(s)	78
BstH2I	RGCGCY	1 cut(s)	345
BstHHI	GCGC	1 cut(s)	344
BstKTI	GATC	1 cut(s)	141
BstMAI	GTCTC	2 cut(s)	191, 306
BstMBI	GATC	1 cut(s)	138
BstMCI	CGRYCG	1 cut(s)	141
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 140
BstNI	CCWGG	3 cut(s)	9, 84, 268
BstPAI	GACNNNNGTC	1 cut(s)	84
BstSCI	CCNGG	3 cut(s)	7, 82, 266
BstUI	CGCG	1 cut(s)	78
BsuRI	GGCC	1 cut(s)	446
BtsCI	GGATG	3 cut(s)	121, 172, 477
BtsIMutI	CAGTG	3 cut(s)	210, 300, 463
BveI	ACCTGC	1 cut(s)	357
CfoI	GCGC	1 cut(s)	344
Cfr10I	RCCGGY	1 cut(s)	272
Cfr13I	GGNCC	2 cut(s)	86, 270
Csp6I	GTAC	1 cut(s)	42
CviJI	RGCY	6 cut(s)	7, 23, 114, 207, 219, 446
CviKI_1	RGCY	6 cut(s)	7, 23, 114, 207, 219, 446
CviQI	GTAC	1 cut(s)	42
DdeI	CTNAG	1 cut(s)	162
DinI	GGCGCC	1 cut(s)	343
DpnI	GATC	1 cut(s)	140
DpnII	GATC	1 cut(s)	138
Eam1104I	CTCTTC	1 cut(s)	390
EarI	CTCTTC	1 cut(s)	390
Eco130I	CCWWGG	1 cut(s)	345
Eco31I	GGTCTC	1 cut(s)	306
Eco47I	GGWCC	2 cut(s)	86, 270
EcoRI	GAATTC	1 cut(s)	62
EcoRII	CCWGG	3 cut(s)	7, 82, 266
EcoT14I	CCWWGG	1 cut(s)	345
EgeI	GGCGCC	1 cut(s)	343
EheI	GGCGCC	1 cut(s)	343
ErhI	CCWWGG	1 cut(s)	345
Esp3I	CGTCTC	1 cut(s)	191
FaiI	YATR	4 cut(s)	183, 330, 356, 381
FokI	GGATG	3 cut(s)	108, 179, 464
FspBI	CTAG	1 cut(s)	323
GlaI	GCGC	1 cut(s)	343
GsuI	CTGGAG	1 cut(s)	30
HaeII	RGCGCY	1 cut(s)	345
HaeIII	GGCC	1 cut(s)	446
HapII	CCGG	1 cut(s)	273
HhaI	GCGC	1 cut(s)	344
Hin1I	GRCGYC	1 cut(s)	342
Hin6I	GCGC	1 cut(s)	342
HinP1I	GCGC	1 cut(s)	342
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HpaI	GTTAAC	1 cut(s)	175
HpaII	CCGG	1 cut(s)	273
Hpy166II	GTNNAC	2 cut(s)	175, 461
Hpy188I	TCNGA	2 cut(s)	119, 163
Hpy188III	TCNNGA	4 cut(s)	67, 373, 470, 481
Hpy8I	GTNNAC	2 cut(s)	175, 461
HpyAV	CCTTC	2 cut(s)	196, 407
HpyCH4V	TGCA	2 cut(s)	47, 263
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 140
HpyF3I	CTNAG	1 cut(s)	162
Hsp92I	GRCGYC	1 cut(s)	342
HspAI	GCGC	1 cut(s)	342
KasI	GGCGCC	1 cut(s)	341
KspAI	GTTAAC	1 cut(s)	175
Kzo9I	GATC	1 cut(s)	138
LmnI	GCTCC	1 cut(s)	4
LweI	GCATC	1 cut(s)	121
MaeI	CTAG	1 cut(s)	323
MalI	GATC	1 cut(s)	140
MboI	GATC	1 cut(s)	138
MboII	GAAGA	1 cut(s)	407
MluCI	AATT	5 cut(s)	62, 191, 247, 331, 485
Mly113I	GGCGCC	1 cut(s)	342
MnlI	CCTC	3 cut(s)	107, 157, 391
MroXI	GAANNNNTTC	2 cut(s)	206, 465
MseI	TTAA	2 cut(s)	174, 221
MslI	CAYNNNNRTG	1 cut(s)	281
MspI	CCGG	1 cut(s)	273
MspR9I	CCNGG	3 cut(s)	9, 84, 268
MvaI	CCWGG	3 cut(s)	9, 84, 268
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	2 cut(s)	29, 140
NarI	GGCGCC	1 cut(s)	342
NdeII	GATC	1 cut(s)	138
NlaIV	GGNNCC	2 cut(s)	6, 343
NmeAIII	GCCGAG	1 cut(s)	49
OliI	CACNNNNGTG	1 cut(s)	281
PdmI	GAANNNNTTC	2 cut(s)	206, 465
Ple19I	CGATCG	1 cut(s)	141
PluTI	GGCGCC	1 cut(s)	345
PshAI	GACNNNNGTC	1 cut(s)	84
PsiI	TTATAA	1 cut(s)	330
Psp6I	CCWGG	3 cut(s)	7, 82, 266
PspGI	CCWGG	3 cut(s)	7, 82, 266
PspN4I	GGNNCC	2 cut(s)	6, 343
PspPI	GGNCC	2 cut(s)	86, 270
PvuI	CGATCG	1 cut(s)	141
RsaI	GTAC	1 cut(s)	43
RsaNI	GTAC	1 cut(s)	42
RseI	CAYNNNNRTG	1 cut(s)	281
SaqAI	TTAA	2 cut(s)	174, 221
Sau3AI	GATC	1 cut(s)	138
Sau96I	GGNCC	2 cut(s)	86, 270
ScrFI	CCNGG	3 cut(s)	9, 84, 268
SetI	ASST	5 cut(s)	74, 109, 324, 371, 402
SfaNI	GCATC	1 cut(s)	121
SfoI	GGCGCC	1 cut(s)	343
SinI	GGWCC	2 cut(s)	86, 270
SmiMI	CAYNNNNRTG	1 cut(s)	281
SmlI	CTYRAG	1 cut(s)	279
SmoI	CTYRAG	1 cut(s)	279
Sse9I	AATT	5 cut(s)	62, 191, 247, 331, 485
SsiI	CCGC	1 cut(s)	89
SspDI	GGCGCC	1 cut(s)	341
SspMI	CTAG	1 cut(s)	323
StyD4I	CCNGG	3 cut(s)	7, 82, 266
StyI	CCWWGG	1 cut(s)	345
TaqII	GACCGA	1 cut(s)	258
TasI	AATT	5 cut(s)	62, 191, 247, 331, 485
Tru1I	TTAA	2 cut(s)	174, 221
Tru9I	TTAA	2 cut(s)	174, 221
TscAI	CASTG	3 cut(s)	217, 300, 463
TspDTI	ATGAA	4 cut(s)	292, 343, 465, 466
TspGWI	ACGGA	1 cut(s)	74
TspRI	CASTG	3 cut(s)	217, 300, 463
VpaK11BI	GGWCC	2 cut(s)	86, 270
XapI	RAATTY	3 cut(s)	62, 191, 485
XmnI	GAANNNNTTC	2 cut(s)	206, 465
XspI	CTAG	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.