Rroxscaffold_5G00365470

Bifunctional epoxide hydrolase 2-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
47029585 .. 47031223
1639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00365470.1

Sequence Viewer

Length: 777 bp
ATGGAGGGAGTAGAGCACAGATCGATCAAGGTCAACGGCATCAACATGCACGTAGCCGAGAAAGGCCAAGGCCCGGTTGTCCTATTCCTCCACGGCTTCCCGGAGCTCTGGTACTCATGGCGGCACCAAATCCAGACCCTGGCCTCGCTCGGCTACCGAGCCGTGGCGCCGGACCTCCGTGGCTTCGGCGACACCGACGCGCCGGCCGACTCGTCGAGCTACACTTGCTTACACGTGGTGGGAGATCTCGTGGAGCTATTGGATGCCGTCGCCGCCGACCAGGAGAAGGAGCCTGGAGAGATAGAAGCCGAGTTCGCCCAAATTGGTACTGCAAGAGTTATTAGGGAATTCTTGACCTTACGCCACCCTGGTCCGCTTTTCCTCCCTAAAGGTAAAGGCTTTGGACATCCCCCAGATGTCCCGATCGCCTTACCAAGTTGGTTGTCTGAGGATGATGTTAACTACTATGTCAGCAAATTTGAGAAGAAGGGCTTCACTGGTGGCTTAAACTACTACCGAAACTTTGACCGAAATTGGGAACTCTTTGCACCCTGGACTGGCACTCAAGTGAAAGTTCCAGTTAAGTTCATTGTGGGAGACCAAGACCTAGTTTATAATTCTCTTGGCGCCAAGGATTTCATACACAATGGCAGGTTCAAGAAATATGTGCCGTTCTTGGAAGAGGTGGTTGTAATGGAAGGAGTTGCCCATTTTAGCAACGAAGAAAAGGCCGATGAAATCAGTGAACACATTCACGACTTCATCAAGAAATTCTAG

Protein Analysis

258

Amino Acids

29.11

Weight (kDa)

5.45

Isoelectric Point (pI)

31.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 25 - 90 1.4e-12 alpha/beta hydrolase fold
Hydrolase_4 PF12146 26 - 98 7.6e-06 Serine aminopeptidase, S33
Abhydrolase_6 PF12697 27 - 92 6.9e-08 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 615
Acc36I ACCTGC 1 cut(s) 642
AccB1I GGYRCC 3 cut(s) 123, 166, 626
AccB7I CCANNNNNTGG 1 cut(s) 139
AccII CGCG 1 cut(s) 200
AciI CCGC 3 cut(s) 121, 273, 374
AcoI YGGCCR 1 cut(s) 204
AcsI RAATTY 3 cut(s) 347, 476, 770
AcvI CACGTG 1 cut(s) 235
AcyI GRCGYC 2 cut(s) 167, 627
AdeI CACNNNGTG 1 cut(s) 238
AfaI GTAC 2 cut(s) 113, 328
AfiI CCNNNNNNNGG 6 cut(s) 73, 139, 163, 286, 535, 557
AflIII ACRYGT 1 cut(s) 232
AgsI TTSAA 1 cut(s) 658
AjnI CCWGG 5 cut(s) 138, 279, 292, 367, 551
AleI CACNNNNGTG 1 cut(s) 566
AluBI AGCT 3 cut(s) 106, 219, 256
AluI AGCT 3 cut(s) 106, 219, 256
Alw21I GWGCWC 2 cut(s) 18, 108
Alw26I GTCTC 1 cut(s) 591
AlwNI CAGNNNCTG 1 cut(s) 139
AoxI GGCC 5 cut(s) 64, 70, 141, 204, 729
ApoI RAATTY 3 cut(s) 347, 476, 770
Asp700I GAANNNNTTC 2 cut(s) 491, 750
AspLEI GCGC 3 cut(s) 169, 202, 629
AspS9I GGNCC 3 cut(s) 71, 172, 371
AsuC2I CCSGG 2 cut(s) 74, 101
AvaII GGWCC 2 cut(s) 172, 371
BanI GGYRCC 3 cut(s) 123, 166, 626
BanII GRGCYC 1 cut(s) 108
BauI CACGAG 1 cut(s) 248
BbrPI CACGTG 1 cut(s) 235
Bbv12I GWGCWC 2 cut(s) 18, 108
BceAI ACGGC 5 cut(s) 52, 109, 146, 251, 655
BciT130I CCWGG 5 cut(s) 140, 281, 294, 369, 553
BcnI CCSGG 2 cut(s) 74, 101
BcoDI GTCTC 1 cut(s) 591
BfaI CTAG 2 cut(s) 608, 775
BfoI RGCGCY 2 cut(s) 170, 630
BfuAI ACCTGC 1 cut(s) 642
BglII AGATCT 1 cut(s) 244
BisI GCNGC 2 cut(s) 122, 273
BlsI GCNGC 2 cut(s) 123, 274
Bme1390I CCNGG 7 cut(s) 74, 101, 140, 281, 294, 369, 553
Bme18I GGWCC 2 cut(s) 172, 371
BmgT120I GGNCC 3 cut(s) 71, 172, 371
BmiI GGNNCC 4 cut(s) 125, 168, 291, 628
BmrFI CCNGG 7 cut(s) 74, 101, 140, 281, 294, 369, 553
BmsI GCATC 2 cut(s) 48, 253
BpmI CTGGAG 1 cut(s) 315
BpuEI CTTGAG 1 cut(s) 549
BpuMI CCSGG 2 cut(s) 74, 101
Bsa29I ATCGAT 1 cut(s) 23
BsaAI YACGTR 2 cut(s) 52, 235
BsaHI GRCGYC 2 cut(s) 167, 627
BsaI GGTCTC 1 cut(s) 591
BsaJI CCNNGG 8 cut(s) 67, 91, 138, 162, 178, 367, 551, 630
BsaXI ACNNNNNCTCC 4 cut(s) 95, 125, 234, 264
Bsc4I CCNNNNNNNGG 6 cut(s) 73, 139, 163, 286, 535, 557
Bse118I RCCGGY 1 cut(s) 202
Bse1I ACTGG 3 cut(s) 502, 562, 578
BseBI CCWGG 5 cut(s) 140, 281, 294, 369, 553
BseCI ATCGAT 1 cut(s) 23
BseDI CCNNGG 8 cut(s) 67, 91, 138, 162, 178, 367, 551, 630
BseGI GGATG 3 cut(s) 268, 406, 457
BseLI CCNNNNNNNGG 6 cut(s) 73, 139, 163, 286, 535, 557
BseMII CTCAG 1 cut(s) 438
BseNI ACTGG 3 cut(s) 502, 562, 578
BseX3I CGGCCG 1 cut(s) 204
Bsh1236I CGCG 1 cut(s) 200
Bsh1285I CGRYCG 2 cut(s) 207, 426
BshFI GGCC 5 cut(s) 66, 72, 143, 206, 731
BshNI GGYRCC 3 cut(s) 123, 166, 626
BshVI ATCGAT 1 cut(s) 23
BsiEI CGRYCG 2 cut(s) 207, 426
BsiHKAI GWGCWC 2 cut(s) 18, 108
BsiSI CCGG 4 cut(s) 74, 101, 170, 203
BslFI GGGAC 1 cut(s) 404
BslI CCNNNNNNNGG 6 cut(s) 73, 139, 163, 286, 535, 557
BsmAI GTCTC 1 cut(s) 591
BsmFI GGGAC 1 cut(s) 404
BsnI GGCC 5 cut(s) 66, 72, 143, 206, 731
Bso31I GGTCTC 1 cut(s) 591
Bsp1286I GDGCHC 2 cut(s) 18, 108
Bsp143I GATC 4 cut(s) 20, 24, 244, 423
BspACI CCGC 3 cut(s) 121, 273, 374
BspANI GGCC 5 cut(s) 66, 72, 143, 206, 731
BspCNI CTCAG 1 cut(s) 439
BspDI ATCGAT 1 cut(s) 23
BspFNI CGCG 1 cut(s) 200
BspLI GGNNCC 4 cut(s) 125, 168, 291, 628
BspMI ACCTGC 1 cut(s) 642
BspT107I GGYRCC 3 cut(s) 123, 166, 626
BspTNI GGTCTC 1 cut(s) 591
BsrFI RCCGGY 1 cut(s) 202
BsrI ACTGG 3 cut(s) 502, 562, 578
BssAI RCCGGY 1 cut(s) 202
BssECI CCNNGG 8 cut(s) 67, 91, 138, 162, 178, 367, 551, 630
BssMI GATC 4 cut(s) 20, 24, 244, 423
BssNI GRCGYC 2 cut(s) 167, 627
BssSI CACGAG 1 cut(s) 248
BssT1I CCWWGG 2 cut(s) 67, 630
Bst2BI CACGAG 1 cut(s) 248
Bst2UI CCWGG 5 cut(s) 140, 281, 294, 369, 553
Bst6I CTCTTC 1 cut(s) 675
BstACI GRCGYC 2 cut(s) 167, 627
BstBAI YACGTR 2 cut(s) 52, 235
BstC8I GCNNGC 1 cut(s) 204
BstDEI CTNAG 1 cut(s) 447
BstDSI CCRYGG 3 cut(s) 91, 162, 178
BstF5I GGATG 3 cut(s) 268, 406, 457
BstFNI CGCG 1 cut(s) 200
BstH2I RGCGCY 2 cut(s) 170, 630
BstHHI GCGC 3 cut(s) 169, 202, 629
BstKTI GATC 4 cut(s) 23, 27, 247, 426
BstMAI GTCTC 1 cut(s) 591
BstMBI GATC 4 cut(s) 20, 24, 244, 423
BstMCI CGRYCG 2 cut(s) 207, 426
BstMWI GCNNNNNNNGC 3 cut(s) 225, 272, 314
BstNI CCWGG 5 cut(s) 140, 281, 294, 369, 553
BstNSI RCATGY 1 cut(s) 49
BstSCI CCNGG 7 cut(s) 72, 99, 138, 279, 292, 367, 551
BstUI CGCG 1 cut(s) 200
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
BstZI CGGCCG 1 cut(s) 204
Bsu15I ATCGAT 1 cut(s) 23
BsuRI GGCC 5 cut(s) 66, 72, 143, 206, 731
BsuTUI ATCGAT 1 cut(s) 23
BtgI CCRYGG 3 cut(s) 91, 162, 178
BtsCI GGATG 3 cut(s) 268, 406, 457
BtsIMutI CAGTG 2 cut(s) 495, 748
BveI ACCTGC 1 cut(s) 642
Cac8I GCNNGC 1 cut(s) 204
CaiI CAGNNNCTG 1 cut(s) 139
CfoI GCGC 3 cut(s) 169, 202, 629
Cfr10I RCCGGY 1 cut(s) 202
Cfr13I GGNCC 3 cut(s) 71, 172, 371
ClaI ATCGAT 1 cut(s) 23
CseI GACGC 1 cut(s) 206
Csp6I GTAC 2 cut(s) 112, 327
CviAII CATG 2 cut(s) 46, 117
CviQI GTAC 2 cut(s) 112, 327
DdeI CTNAG 1 cut(s) 447
DinI GGCGCC 2 cut(s) 168, 628
DpnI GATC 4 cut(s) 22, 26, 246, 425
DpnII GATC 4 cut(s) 20, 24, 244, 423
DraIII CACNNNGTG 1 cut(s) 238
EaeI YGGCCR 1 cut(s) 204
EagI CGGCCG 1 cut(s) 204
Eam1104I CTCTTC 1 cut(s) 675
EarI CTCTTC 1 cut(s) 675
Ecl136II GAGCTC 1 cut(s) 106
EclXI CGGCCG 1 cut(s) 204
Eco130I CCWWGG 2 cut(s) 67, 630
Eco24I GRGCYC 1 cut(s) 108
Eco31I GGTCTC 1 cut(s) 591
Eco47I GGWCC 2 cut(s) 172, 371
Eco52I CGGCCG 1 cut(s) 204
Eco53kI GAGCTC 1 cut(s) 106
Eco72I CACGTG 1 cut(s) 235
EcoICRI GAGCTC 1 cut(s) 106
EcoRI GAATTC 1 cut(s) 347
EcoRII CCWGG 5 cut(s) 138, 279, 292, 367, 551
EcoT14I CCWWGG 2 cut(s) 67, 630
EcoT38I GRGCYC 1 cut(s) 108
EgeI GGCGCC 2 cut(s) 168, 628
EheI GGCGCC 2 cut(s) 168, 628
ErhI CCWWGG 2 cut(s) 67, 630
FaeI CATG 2 cut(s) 49, 120
FaiI YATR 6 cut(s) 47, 118, 468, 615, 641, 666
FalI AAGNNNNNCTT 2 cut(s) 476, 508
FaqI GGGAC 1 cut(s) 404
FatI CATG 2 cut(s) 45, 116
Fnu4HI GCNGC 2 cut(s) 122, 273
FokI GGATG 3 cut(s) 275, 393, 464
FriOI GRGCYC 1 cut(s) 108
Fsp4HI GCNGC 2 cut(s) 122, 273
FspBI CTAG 2 cut(s) 608, 775
GlaI GCGC 3 cut(s) 168, 201, 628
GluI GCNGC 2 cut(s) 122, 273
GsuI CTGGAG 1 cut(s) 315
HaeII RGCGCY 2 cut(s) 170, 630
HaeIII GGCC 5 cut(s) 66, 72, 143, 206, 731
HapII CCGG 4 cut(s) 74, 101, 170, 203
HgaI GACGC 1 cut(s) 206
HhaI GCGC 3 cut(s) 169, 202, 629
Hin1I GRCGYC 2 cut(s) 167, 627
Hin1II CATG 2 cut(s) 49, 120
Hin6I GCGC 3 cut(s) 167, 200, 627
HinP1I GCGC 3 cut(s) 167, 200, 627
HincII GTYRAC 2 cut(s) 34, 460
HindII GTYRAC 2 cut(s) 34, 460
HinfI GANTC 1 cut(s) 209
HpaI GTTAAC 1 cut(s) 460
HpaII CCGG 4 cut(s) 74, 101, 170, 203
Hpy166II GTNNAC 3 cut(s) 34, 460, 746
Hpy188I TCNGA 1 cut(s) 448
Hpy188III TCNNGA 6 cut(s) 133, 352, 421, 658, 755, 766
Hpy8I GTNNAC 3 cut(s) 34, 460, 746
Hpy99I CGWCG 3 cut(s) 200, 217, 272
HpyAV CCTTC 3 cut(s) 280, 481, 692
HpyCH4IV ACGT 2 cut(s) 51, 234
HpyCH4V TGCA 3 cut(s) 49, 332, 548
HpyF10VI GCNNNNNNNGC 3 cut(s) 225, 272, 314
HpyF3I CTNAG 1 cut(s) 447
HpySE526I ACGT 2 cut(s) 51, 234
Hsp92I GRCGYC 2 cut(s) 167, 627
Hsp92II CATG 2 cut(s) 49, 120
HspAI GCGC 3 cut(s) 167, 200, 627
KasI GGCGCC 2 cut(s) 166, 626
KroI GCCGGC 1 cut(s) 202
KroNI GCCGGC 1 cut(s) 204
KspAI GTTAAC 1 cut(s) 460
Kzo9I GATC 4 cut(s) 20, 24, 244, 423
LmnI GCTCC 3 cut(s) 103, 253, 289
LweI GCATC 2 cut(s) 48, 253
MaeI CTAG 2 cut(s) 608, 775
MaeII ACGT 2 cut(s) 51, 234
MalI GATC 4 cut(s) 22, 26, 246, 425
MboI GATC 4 cut(s) 20, 24, 244, 423
MboII GAAGA 3 cut(s) 496, 692, 734
MflI RGATCY 1 cut(s) 244
MhlI GDGCHC 2 cut(s) 18, 108
MluCI AATT 6 cut(s) 321, 347, 476, 532, 616, 770
Mly113I GGCGCC 2 cut(s) 167, 627
MlyI GAGTC 1 cut(s) 203
MnlI CCTC 6 cut(s) 98, 154, 185, 392, 442, 676
MroNI GCCGGC 1 cut(s) 202
MroXI GAANNNNTTC 2 cut(s) 491, 750
MseI TTAA 3 cut(s) 459, 506, 582
MslI CAYNNNNRTG 2 cut(s) 44, 566
MspI CCGG 4 cut(s) 74, 101, 170, 203
MspR9I CCNGG 7 cut(s) 74, 101, 140, 281, 294, 369, 553
MvaI CCWGG 5 cut(s) 140, 281, 294, 369, 553
MvnI CGCG 1 cut(s) 200
MwoI GCNNNNNNNGC 3 cut(s) 225, 272, 314
NaeI GCCGGC 1 cut(s) 204
NarI GGCGCC 2 cut(s) 167, 627
NciI CCSGG 2 cut(s) 74, 101
NdeII GATC 4 cut(s) 20, 24, 244, 423
NgoMIV GCCGGC 1 cut(s) 202
NlaIII CATG 2 cut(s) 49, 120
NlaIV GGNNCC 4 cut(s) 125, 168, 291, 628
NmeAIII GCCGAG 3 cut(s) 82, 129, 334
NspI RCATGY 1 cut(s) 49
OliI CACNNNNGTG 1 cut(s) 566
PcsI WCGNNNNNNNCGW 2 cut(s) 192, 204
PdiI GCCGGC 1 cut(s) 204
PdmI GAANNNNTTC 2 cut(s) 491, 750
PflMI CCANNNNNTGG 1 cut(s) 139
PfoI TCCNGGA 1 cut(s) 99
PkrI GCNGC 2 cut(s) 123, 274
Ple19I CGATCG 1 cut(s) 426
PleI GAGTC 1 cut(s) 203
PluTI GGCGCC 2 cut(s) 170, 630
PmaCI CACGTG 1 cut(s) 235
PmlI CACGTG 1 cut(s) 235
PpsI GAGTC 1 cut(s) 203
Ppu21I YACGTR 2 cut(s) 52, 235
PsiI TTATAA 1 cut(s) 615
Psp124BI GAGCTC 1 cut(s) 108
Psp6I CCWGG 5 cut(s) 138, 279, 292, 367, 551
PspCI CACGTG 1 cut(s) 235
PspGI CCWGG 5 cut(s) 138, 279, 292, 367, 551
PspN4I GGNNCC 4 cut(s) 125, 168, 291, 628
PspPI GGNCC 3 cut(s) 71, 172, 371
PstNI CAGNNNCTG 1 cut(s) 139
PsuI RGATCY 1 cut(s) 244
PvuI CGATCG 1 cut(s) 426
RsaI GTAC 2 cut(s) 113, 328
RsaNI GTAC 2 cut(s) 112, 327
RseI CAYNNNNRTG 2 cut(s) 44, 566
SacI GAGCTC 1 cut(s) 108
SaqAI TTAA 3 cut(s) 459, 506, 582
SatI GCNGC 2 cut(s) 122, 273
Sau3AI GATC 4 cut(s) 20, 24, 244, 423
Sau96I GGNCC 3 cut(s) 71, 172, 371
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 7 cut(s) 74, 101, 140, 281, 294, 369, 553
SduI GDGCHC 2 cut(s) 18, 108
SfaNI GCATC 2 cut(s) 48, 253
SfoI GGCGCC 2 cut(s) 168, 628
SinI GGWCC 2 cut(s) 172, 371
SmiMI CAYNNNNRTG 2 cut(s) 44, 566
SmlI CTYRAG 1 cut(s) 564
SmoI CTYRAG 1 cut(s) 564
Sse9I AATT 6 cut(s) 321, 347, 476, 532, 616, 770
SsiI CCGC 3 cut(s) 121, 273, 374
SspDI GGCGCC 2 cut(s) 166, 626
SspMI CTAG 2 cut(s) 608, 775
SstI GAGCTC 1 cut(s) 108
StyD4I CCNGG 7 cut(s) 72, 99, 138, 279, 292, 367, 551
StyI CCWWGG 2 cut(s) 67, 630
TaiI ACGT 2 cut(s) 54, 237
TaqI TCGA 2 cut(s) 23, 215
TaqII GACCGA 1 cut(s) 543
TasI AATT 6 cut(s) 321, 347, 476, 532, 616, 770
TauI GCSGC 2 cut(s) 124, 275
Tru1I TTAA 3 cut(s) 459, 506, 582
Tru9I TTAA 3 cut(s) 459, 506, 582
TscAI CASTG 2 cut(s) 502, 748
TspDTI ATGAA 4 cut(s) 577, 628, 750, 751
TspGWI ACGGA 1 cut(s) 167
TspRI CASTG 2 cut(s) 502, 748
Van91I CCANNNNNTGG 1 cut(s) 139
VpaK11BI GGWCC 2 cut(s) 172, 371
XapI RAATTY 3 cut(s) 347, 476, 770
XceI RCATGY 1 cut(s) 49
XmnI GAANNNNTTC 2 cut(s) 491, 750
XspI CTAG 2 cut(s) 608, 775
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.