Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002038.1

Orthogroup ID

OG0000795

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1371

Gene Structure 1371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002038.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

gagcctggagagattgaagccgagttcgcccaaattggtactgcaagagttattagggaattcttgacgtttcgccaccctggtccgcttttcctccctaaaggtaaactttttggacatcccccagatgctccaatcgccttaccaagttggttgtctgaggatgatgttaactactatgtcagcaaatttgagaagaagggcttcacaggtggcataaactactaccgaaaccttgaccgaaattgggaactccttgcaccctggactggcgctcaagtgaaaattccagttaagttcattgtgggagaccaagacctagtttataattctcttggcgccaaggatttcatacacaatggcgggttcaagaaatatgtgccgttcttggaagaggtagttgtgatggaaggagttgcccattttaacaaccaagaaatggccgatgaaatcagtgaacacattcacgacttcatcaagacattccagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001676 GO:0002532 GO:0002538 GO:0002539 GO:0003008 GO:0003013 GO:0003674 GO:0003824 GO:0004301 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006954 GO:0007600 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016801 GO:0016803 GO:0019233 GO:0019752 GO:0030258 GO:0032501 GO:0032787 GO:0033559 GO:0042577 GO:0042578 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043651 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045777 GO:0046839 GO:0046872 GO:0050877 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

163

Amino Acids

18.6

Weight (kDa)

5.33

Isoelectric Point (pI)

30.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26740 AT2G26750 AT3G05600 AT3G05600 AT4G15955 AT4G15955
fragaria_vesca	FvH4_2g25390 FvH4_4g18591 FvH4_4g18600 FvH4_4g18600
malus_domestica	MD16G1164900.v1.1 MD16G1165000.v1.1 MD16G1165100.v1.1 MD16G1165300.v1.1 MD16G1165500.v1.1 MD17G1016400.v1.1 MD17G1016500.v1.1
prunus_persica	Prupe.1G124200_v2.0.a1 Prupe.1G124300_v2.0.a1 Prupe.1G124500_v2.0.a1
pyrus_communis	pycom13g14130 pycom16g13960 pycom16g13970 pycom16g13980
rosa_chinensis	RchiOBHm_Chr4g0423281 RchiOBHm_Chr4g0423291 RchiOBHm_Chr4g0423301 RchiOBHm_Chr6g0293571
rosa_laevigata	RLG00000007570 RLG00000007572 RLG00000011940 RLG00000036336
rosa_multiflora	Rmu_co7970336.1_g000001 Rmu_co8074082.1_g000001 Rmu_sc0001290.1_g000009 Rmu_sc0001290.1_g000011 Rmu_sc0002038.1_g000001 Rmu_sc0002038.1_g000010 Rmu_sc0005142.1_g000038 Rmu_sc0006269.1_g000005 Rmu_sc0012160.1_g000002
rosa_roxburghii	Rroxscaffold_5G00365420 Rroxscaffold_5G00365470 Rroxscaffold_5G00365490 Rroxscaffold_7G00174080
rosa_rugosa	Rorug04G0185700 Rorug04G0185800 Rorug04G0185900 Rorug04G0186100 Rorug04G0186200 Rorug06G0236700
rosa_samantha	Rh4AG245400 Rh4AG245500 Rh4AG245600 Rh4BG250700 Rh4BG250900 Rh4BG251000 Rh4CG259000 Rh4CG259200 Rh4CG259400 Rh4DG245400 Rh4DG245600 Rh4DG245700 Rh4DG245800 Rh6CG363400 Rh6DG350300
rosa_wichuraiana	Rw4G021080 Rw4G021090 Rw6G030390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	327
AccB1I	GGYRCC	1 cut(s)	338
AccB7I	CCANNNNNTGG	1 cut(s)	439
AciI	CCGC	2 cut(s)	86, 363
AcoI	YGGCCR	1 cut(s)	441
AcsI	RAATTY	3 cut(s)	59, 188, 285
AcyI	GRCGYC	1 cut(s)	339
AfaI	GTAC	1 cut(s)	40
AfiI	CCNNNNNNNGG	3 cut(s)	247, 269, 439
AgsI	TTSAA	2 cut(s)	17, 370
AjnI	CCWGG	3 cut(s)	4, 79, 263
Alw26I	GTCTC	1 cut(s)	303
AoxI	GGCC	1 cut(s)	441
ApoI	RAATTY	3 cut(s)	59, 188, 285
Asp700I	GAANNNNTTC	2 cut(s)	203, 462
AspLEI	GCGC	2 cut(s)	275, 341
AspS9I	GGNCC	1 cut(s)	83
AvaII	GGWCC	1 cut(s)	83
BanI	GGYRCC	1 cut(s)	338
BccI	CCATC	1 cut(s)	400
BceAI	ACGGC	1 cut(s)	367
BciT130I	CCWGG	3 cut(s)	6, 81, 265
BcoDI	GTCTC	1 cut(s)	303
BfaI	CTAG	1 cut(s)	320
BfoI	RGCGCY	2 cut(s)	276, 342
Bme1390I	CCNGG	3 cut(s)	6, 81, 265
Bme18I	GGWCC	1 cut(s)	83
BmgT120I	GGNCC	1 cut(s)	83
BmiI	GGNNCC	1 cut(s)	340
BmrFI	CCNGG	3 cut(s)	6, 81, 265
BmsI	GCATC	1 cut(s)	118
BpmI	CTGGAG	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	261
BsaHI	GRCGYC	1 cut(s)	339
BsaI	GGTCTC	1 cut(s)	303
BsaJI	CCNNGG	3 cut(s)	79, 263, 342
Bsc4I	CCNNNNNNNGG	3 cut(s)	247, 269, 439
Bse1I	ACTGG	3 cut(s)	274, 290, 487
BseBI	CCWGG	3 cut(s)	6, 81, 265
BseDI	CCNNGG	3 cut(s)	79, 263, 342
BseGI	GGATG	2 cut(s)	118, 169
BseLI	CCNNNNNNNGG	3 cut(s)	247, 269, 439
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	3 cut(s)	274, 290, 487
BshFI	GGCC	1 cut(s)	443
BshNI	GGYRCC	1 cut(s)	338
BslI	CCNNNNNNNGG	3 cut(s)	247, 269, 439
BsmAI	GTCTC	1 cut(s)	303
BsnI	GGCC	1 cut(s)	443
Bso31I	GGTCTC	1 cut(s)	303
BspACI	CCGC	2 cut(s)	86, 363
BspANI	GGCC	1 cut(s)	443
BspCNI	CTCAG	1 cut(s)	151
BspLI	GGNNCC	1 cut(s)	340
BspT107I	GGYRCC	1 cut(s)	338
BspTNI	GGTCTC	1 cut(s)	303
BsrI	ACTGG	3 cut(s)	274, 290, 487
BssECI	CCNNGG	3 cut(s)	79, 263, 342
BssNI	GRCGYC	1 cut(s)	339
BssT1I	CCWWGG	1 cut(s)	342
Bst2UI	CCWGG	3 cut(s)	6, 81, 265
Bst6I	CTCTTC	1 cut(s)	387
BstACI	GRCGYC	1 cut(s)	339
BstDEI	CTNAG	1 cut(s)	159
BstF5I	GGATG	2 cut(s)	118, 169
BstH2I	RGCGCY	2 cut(s)	276, 342
BstHHI	GCGC	2 cut(s)	275, 341
BstMAI	GTCTC	1 cut(s)	303
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 137
BstNI	CCWGG	3 cut(s)	6, 81, 265
BstSCI	CCNGG	3 cut(s)	4, 79, 263
BsuRI	GGCC	1 cut(s)	443
BtsCI	GGATG	2 cut(s)	118, 169
BtsIMutI	CAGTG	1 cut(s)	460
CfoI	GCGC	2 cut(s)	275, 341
Cfr13I	GGNCC	1 cut(s)	83
Csp6I	GTAC	1 cut(s)	39
CviJI	RGCY	4 cut(s)	4, 20, 204, 443
CviKI_1	RGCY	4 cut(s)	4, 20, 204, 443
CviQI	GTAC	1 cut(s)	39
DdeI	CTNAG	1 cut(s)	159
DinI	GGCGCC	1 cut(s)	340
EaeI	YGGCCR	1 cut(s)	441
Eam1104I	CTCTTC	1 cut(s)	387
EarI	CTCTTC	1 cut(s)	387
Eco130I	CCWWGG	1 cut(s)	342
Eco31I	GGTCTC	1 cut(s)	303
Eco47I	GGWCC	1 cut(s)	83
EcoRI	GAATTC	1 cut(s)	59
EcoRII	CCWGG	3 cut(s)	4, 79, 263
EcoT14I	CCWWGG	1 cut(s)	342
EgeI	GGCGCC	1 cut(s)	340
EheI	GGCGCC	1 cut(s)	340
ErhI	CCWWGG	1 cut(s)	342
FaiI	YATR	5 cut(s)	180, 218, 327, 353, 378
FalI	AAGNNNNNCTT	4 cut(s)	93, 125, 188, 220
FauI	CCCGC	1 cut(s)	356
FokI	GGATG	2 cut(s)	105, 176
FspBI	CTAG	1 cut(s)	320
GlaI	GCGC	2 cut(s)	274, 340
GsuI	CTGGAG	1 cut(s)	27
HaeII	RGCGCY	2 cut(s)	276, 342
HaeIII	GGCC	1 cut(s)	443
HhaI	GCGC	2 cut(s)	275, 341
Hin1I	GRCGYC	1 cut(s)	339
Hin6I	GCGC	2 cut(s)	273, 339
HinP1I	GCGC	2 cut(s)	273, 339
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HpaI	GTTAAC	1 cut(s)	172
Hpy166II	GTNNAC	3 cut(s)	107, 172, 458
Hpy188I	TCNGA	1 cut(s)	160
Hpy188III	TCNNGA	4 cut(s)	64, 370, 467, 478
Hpy8I	GTNNAC	3 cut(s)	107, 172, 458
HpyAV	CCTTC	2 cut(s)	193, 404
HpyCH4IV	ACGT	1 cut(s)	68
HpyCH4V	TGCA	2 cut(s)	44, 260
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 137
HpyF3I	CTNAG	1 cut(s)	159
HpySE526I	ACGT	1 cut(s)	68
Hsp92I	GRCGYC	1 cut(s)	339
HspAI	GCGC	2 cut(s)	273, 339
KasI	GGCGCC	1 cut(s)	338
KspAI	GTTAAC	1 cut(s)	172
LmnI	GCTCC	1 cut(s)	136
LpnPI	CCDG	9 cut(s)	18, 66, 93, 138, 195, 250, 255, 277, 303
LweI	GCATC	1 cut(s)	118
MaeI	CTAG	1 cut(s)	320
MaeII	ACGT	1 cut(s)	68
MboII	GAAGA	2 cut(s)	208, 404
MluCI	AATT	6 cut(s)	33, 59, 188, 244, 285, 328
Mly113I	GGCGCC	1 cut(s)	339
MnlI	CCTC	3 cut(s)	104, 154, 388
MroXI	GAANNNNTTC	2 cut(s)	203, 462
MseI	TTAA	3 cut(s)	171, 294, 426
MspR9I	CCNGG	3 cut(s)	6, 81, 265
MvaI	CCWGG	3 cut(s)	6, 81, 265
MwoI	GCNNNNNNNGC	2 cut(s)	26, 137
NarI	GGCGCC	1 cut(s)	339
NlaIV	GGNNCC	1 cut(s)	340
NmeAIII	GCCGAG	1 cut(s)	46
PdmI	GAANNNNTTC	2 cut(s)	203, 462
PflMI	CCANNNNNTGG	1 cut(s)	439
PluTI	GGCGCC	1 cut(s)	342
PsiI	TTATAA	1 cut(s)	327
Psp6I	CCWGG	3 cut(s)	4, 79, 263
PspGI	CCWGG	3 cut(s)	4, 79, 263
PspN4I	GGNNCC	1 cut(s)	340
PspPI	GGNCC	1 cut(s)	83
RsaI	GTAC	1 cut(s)	40
RsaNI	GTAC	1 cut(s)	39
SaqAI	TTAA	3 cut(s)	171, 294, 426
Sau96I	GGNCC	1 cut(s)	83
ScrFI	CCNGG	3 cut(s)	6, 81, 265
SetI	ASST	6 cut(s)	71, 106, 214, 237, 321, 399
SfaNI	GCATC	1 cut(s)	118
SfoI	GGCGCC	1 cut(s)	340
SinI	GGWCC	1 cut(s)	83
SmlI	CTYRAG	1 cut(s)	276
SmoI	CTYRAG	1 cut(s)	276
Sse9I	AATT	6 cut(s)	33, 59, 188, 244, 285, 328
SsiI	CCGC	2 cut(s)	86, 363
SspDI	GGCGCC	1 cut(s)	338
SspMI	CTAG	1 cut(s)	320
StyD4I	CCNGG	3 cut(s)	4, 79, 263
StyI	CCWWGG	1 cut(s)	342
TaiI	ACGT	1 cut(s)	71
TaqII	GACCGA	1 cut(s)	255
TasI	AATT	6 cut(s)	33, 59, 188, 244, 285, 328
Tru1I	TTAA	3 cut(s)	171, 294, 426
Tru9I	TTAA	3 cut(s)	171, 294, 426
TscAI	CASTG	1 cut(s)	460
TspDTI	ATGAA	4 cut(s)	289, 340, 462, 463
TspRI	CASTG	1 cut(s)	460
Van91I	CCANNNNNTGG	1 cut(s)	439
VpaK11BI	GGWCC	1 cut(s)	83
XapI	RAATTY	3 cut(s)	59, 188, 285
XmnI	GAANNNNTTC	2 cut(s)	203, 462
XspI	CTAG	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.