Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0000795

Physical Location & Seq

Genomic Coordinates Forward (+)

1327206 .. 1327484

Gene Structure 279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1016500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGTTGGAGACCTCGTGGCAGTCCTGGACGCCATCGCACCTGATCAGGAGCAGGTGTTCGTGGTGTCCCACGACTGGGGCACCATCATCGCTTGGTACCTCTGCCTGTTCCGGCCCGACTGGGTCAAAGCCTTGGTCAGCTTGAGTGTGCAGTTCCGACCGCGAAACCCTCAGAGGAAGTTCATCGAAATGGTTCAAGCTGTTTATGGCGACGACTATTACATGTGCAGATTTCAGGTTTGGTACTTTCTATTTATTTATTTTTTTGGAATTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001676 GO:0002532 GO:0002538 GO:0002539 GO:0003008 GO:0003013 GO:0003674 GO:0003824 GO:0004301 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006954 GO:0007600 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016801 GO:0016803 GO:0019233 GO:0019752 GO:0030258 GO:0032501 GO:0032787 GO:0033559 GO:0042577 GO:0042578 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043651 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045777 GO:0046839 GO:0046872 GO:0050877 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

93

Amino Acids

11.0

Weight (kDa)

5.03

Isoelectric Point (pI)

24.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	15 - 55	6.7e-06	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26740 AT2G26750 AT3G05600 AT3G05600 AT4G15955 AT4G15955
fragaria_vesca	FvH4_2g25390 FvH4_4g18591 FvH4_4g18600 FvH4_4g18600
malus_domestica	MD16G1164900.v1.1 MD16G1165000.v1.1 MD16G1165100.v1.1 MD16G1165300.v1.1 MD16G1165500.v1.1 MD17G1016400.v1.1 MD17G1016500.v1.1
prunus_persica	Prupe.1G124200_v2.0.a1 Prupe.1G124300_v2.0.a1 Prupe.1G124500_v2.0.a1
pyrus_communis	pycom13g14130 pycom16g13960 pycom16g13970 pycom16g13980
rosa_chinensis	RchiOBHm_Chr4g0423281 RchiOBHm_Chr4g0423291 RchiOBHm_Chr4g0423301 RchiOBHm_Chr6g0293571
rosa_laevigata	RLG00000007570 RLG00000007572 RLG00000011940 RLG00000036336
rosa_multiflora	Rmu_co7970336.1_g000001 Rmu_co8074082.1_g000001 Rmu_sc0001290.1_g000009 Rmu_sc0001290.1_g000011 Rmu_sc0002038.1_g000001 Rmu_sc0002038.1_g000010 Rmu_sc0005142.1_g000038 Rmu_sc0006269.1_g000005 Rmu_sc0012160.1_g000002
rosa_roxburghii	Rroxscaffold_5G00365420 Rroxscaffold_5G00365470 Rroxscaffold_5G00365490 Rroxscaffold_7G00174080
rosa_rugosa	Rorug04G0185700 Rorug04G0185800 Rorug04G0185900 Rorug04G0186100 Rorug04G0186200 Rorug06G0236700
rosa_samantha	Rh4AG245400 Rh4AG245500 Rh4AG245600 Rh4BG250700 Rh4BG250900 Rh4BG251000 Rh4CG259000 Rh4CG259200 Rh4CG259400 Rh4DG245400 Rh4DG245600 Rh4DG245700 Rh4DG245800 Rh6CG363400 Rh6DG350300
rosa_wichuraiana	Rw4G021080 Rw4G021090 Rw6G030390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
Acc65I	GGTACC	1 cut(s)	96
AccB1I	GGYRCC	2 cut(s)	80, 96
AccII	CGCG	1 cut(s)	163
AciI	CCGC	1 cut(s)	161
AcsI	RAATTY	1 cut(s)	270
AcyI	GRCGYC	1 cut(s)	30
AfaI	GTAC	2 cut(s)	98, 245
AfiI	CCNNNNNNNGG	2 cut(s)	75, 76
AflIII	ACRYGT	1 cut(s)	222
AgsI	TTSAA	1 cut(s)	197
AjnI	CCWGG	1 cut(s)	24
AloI	GAACNNNNNNTCC	2 cut(s)	41, 73
AluBI	AGCT	2 cut(s)	141, 200
AluI	AGCT	2 cut(s)	141, 200
Alw26I	GTCTC	1 cut(s)	3
AoxI	GGCC	1 cut(s)	113
ApoI	RAATTY	1 cut(s)	270
ArsI	GACNNNNNNTTYG	2 cut(s)	120, 152
Asp700I	GAANNNNTTC	1 cut(s)	192
Asp718I	GGTACC	1 cut(s)	96
AspS9I	GGNCC	1 cut(s)	114
BaeGI	GKGCMC	1 cut(s)	83
BanI	GGYRCC	2 cut(s)	80, 96
BauI	CACGAG	1 cut(s)	14
BccI	CCATC	2 cut(s)	41, 92
BcgI	CGANNNNNNTGC	2 cut(s)	70, 104
BciT130I	CCWGG	1 cut(s)	26
BclI	TGATCA	1 cut(s)	43
BcoDI	GTCTC	1 cut(s)	3
BfuAI	ACCTGC	1 cut(s)	43
Bme1390I	CCNGG	1 cut(s)	26
BmgT120I	GGNCC	1 cut(s)	114
BmiI	GGNNCC	2 cut(s)	82, 98
BmrFI	CCNGG	1 cut(s)	26
BmrI	ACTGGG	2 cut(s)	85, 130
BmuI	ACTGGG	2 cut(s)	85, 130
BpuEI	CTTGAG	1 cut(s)	163
BsaHI	GRCGYC	1 cut(s)	30
BsaI	GGTCTC	1 cut(s)	3
BsaJI	CCNNGG	1 cut(s)	132
BsaXI	ACNNNNNCTCC	3 cut(s)	30, 41, 71
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 76
Bse1I	ACTGG	2 cut(s)	80, 125
BseBI	CCWGG	1 cut(s)	26
BseDI	CCNNGG	1 cut(s)	132
BseLI	CCNNNNNNNGG	2 cut(s)	75, 76
BseMII	CTCAG	1 cut(s)	185
BseNI	ACTGG	2 cut(s)	80, 125
BseSI	GKGCMC	1 cut(s)	83
BsgI	GTGCAG	2 cut(s)	170, 247
Bsh1236I	CGCG	1 cut(s)	163
Bsh1285I	CGRYCG	1 cut(s)	161
BshFI	GGCC	1 cut(s)	115
BshNI	GGYRCC	2 cut(s)	80, 96
BsiEI	CGRYCG	1 cut(s)	161
BsiSI	CCGG	1 cut(s)	112
BslFI	GGGAC	1 cut(s)	52
BslI	CCNNNNNNNGG	2 cut(s)	75, 76
BsmAI	GTCTC	1 cut(s)	3
BsmFI	GGGAC	1 cut(s)	52
BsnI	GGCC	1 cut(s)	115
Bso31I	GGTCTC	1 cut(s)	3
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp143I	GATC	1 cut(s)	43
BspACI	CCGC	1 cut(s)	161
BspANI	GGCC	1 cut(s)	115
BspCNI	CTCAG	1 cut(s)	184
BspFNI	CGCG	1 cut(s)	163
BspLI	GGNNCC	2 cut(s)	82, 98
BspMI	ACCTGC	1 cut(s)	43
BspT107I	GGYRCC	2 cut(s)	80, 96
BspTNI	GGTCTC	1 cut(s)	3
BsrI	ACTGG	2 cut(s)	80, 125
BssECI	CCNNGG	1 cut(s)	132
BssMI	GATC	1 cut(s)	43
BssNI	GRCGYC	1 cut(s)	30
BssSI	CACGAG	1 cut(s)	14
BssT1I	CCWWGG	1 cut(s)	132
Bst2BI	CACGAG	1 cut(s)	14
Bst2UI	CCWGG	1 cut(s)	26
BstACI	GRCGYC	1 cut(s)	30
BstDEI	CTNAG	1 cut(s)	171
BstFNI	CGCG	1 cut(s)	163
BstKTI	GATC	1 cut(s)	46
BstMAI	GTCTC	1 cut(s)	3
BstMBI	GATC	1 cut(s)	43
BstMCI	CGRYCG	1 cut(s)	161
BstNI	CCWGG	1 cut(s)	26
BstNSI	RCATGY	1 cut(s)	226
BstSCI	CCNGG	1 cut(s)	24
BstSLI	GKGCMC	1 cut(s)	83
BstUI	CGCG	1 cut(s)	163
BsuRI	GGCC	1 cut(s)	115
BtgZI	GCGATG	2 cut(s)	19, 73
BveI	ACCTGC	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	114
CseI	GACGC	1 cut(s)	38
Csp6I	GTAC	2 cut(s)	97, 244
CviAII	CATG	1 cut(s)	223
CviJI	RGCY	4 cut(s)	115, 131, 141, 200
CviKI_1	RGCY	4 cut(s)	115, 131, 141, 200
CviQI	GTAC	2 cut(s)	97, 244
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	132
Eco31I	GGTCTC	1 cut(s)	3
EcoRII	CCWGG	1 cut(s)	24
EcoT14I	CCWWGG	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	132
FaeI	CATG	1 cut(s)	226
FaiI	YATR	2 cut(s)	207, 224
FaqI	GGGAC	1 cut(s)	52
FatI	CATG	1 cut(s)	222
FbaI	TGATCA	1 cut(s)	43
HaeIII	GGCC	1 cut(s)	115
HapII	CCGG	1 cut(s)	112
HgaI	GACGC	1 cut(s)	38
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	1 cut(s)	226
HpaII	CCGG	1 cut(s)	112
Hpy188I	TCNGA	2 cut(s)	158, 174
Hpy188III	TCNNGA	1 cut(s)	47
Hpy99I	CGWCG	1 cut(s)	215
HpyCH4V	TGCA	2 cut(s)	151, 228
HpyF3I	CTNAG	1 cut(s)	171
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	1 cut(s)	226
KpnI	GGTACC	1 cut(s)	100
Ksp22I	TGATCA	1 cut(s)	43
Kzo9I	GATC	1 cut(s)	43
LmnI	GCTCC	1 cut(s)	49
MalI	GATC	1 cut(s)	45
MboI	GATC	1 cut(s)	43
MhlI	GDGCHC	1 cut(s)	83
MluCI	AATT	1 cut(s)	270
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	4 cut(s)	23, 110, 168, 180
MroXI	GAANNNNTTC	1 cut(s)	192
MslI	CAYNNNNRTG	1 cut(s)	188
MspI	CCGG	1 cut(s)	112
MspR9I	CCNGG	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	26
MvnI	CGCG	1 cut(s)	163
NdeII	GATC	1 cut(s)	43
NlaIII	CATG	1 cut(s)	226
NlaIV	GGNNCC	2 cut(s)	82, 98
NspI	RCATGY	1 cut(s)	226
PaqCI	CACCTGC	1 cut(s)	43
PciI	ACATGT	1 cut(s)	222
PdmI	GAANNNNTTC	1 cut(s)	192
PflFI	GACNNNGTC	1 cut(s)	122
PfoI	TCCNGGA	1 cut(s)	24
PscI	ACATGT	1 cut(s)	222
Psp6I	CCWGG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	24
PspN4I	GGNNCC	2 cut(s)	82, 98
PspPI	GGNCC	1 cut(s)	114
PsyI	GACNNNGTC	1 cut(s)	122
RsaI	GTAC	2 cut(s)	98, 245
RsaNI	GTAC	2 cut(s)	97, 244
RseI	CAYNNNNRTG	1 cut(s)	188
Sau3AI	GATC	1 cut(s)	43
Sau96I	GGNCC	1 cut(s)	114
ScrFI	CCNGG	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	83
SetI	ASST	7 cut(s)	15, 43, 57, 102, 143, 202, 240
SmiMI	CAYNNNNRTG	1 cut(s)	188
SmlI	CTYRAG	1 cut(s)	142
SmoI	CTYRAG	1 cut(s)	142
Sse9I	AATT	1 cut(s)	270
SsiI	CCGC	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	24
StyI	CCWWGG	1 cut(s)	132
TaqI	TCGA	1 cut(s)	186
TasI	AATT	1 cut(s)	270
TspDTI	ATGAA	1 cut(s)	172
Tth111I	GACNNNGTC	1 cut(s)	122
XapI	RAATTY	1 cut(s)	270
XceI	RCATGY	1 cut(s)	226
XmnI	GAANNNNTTC	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.