Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000795

Physical Location & Seq

Genomic Coordinates Forward (+)

13858929 .. 13860147

Gene Structure 1219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00174080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGAGCGTTGCCTTCACTCCAAGAAATCCTCAATACAAGCCTATTCAAGCCCTAAAAGCAGTTTATGGCGGTGACTATTACATGTGCAGATTTCAGGAAGAAGGTGACATAGAAGACGAGCTTGCCAACCTTGGTTGTGCTAGGGTCATGAAGGAATTCCTAACCAACCGCAATCCCGGTCCGCTTTTGCTTCCTAAAGGTAAAGGGTTTGGAAATGCCAGCCCTGATGCTCTGATCACATTGCCGAGCTGGTTGTCTGAGGATGATATCCACTACTACGCCAGCAATTTCGAGGAGAAGGGCTTCACCGGTGCCTTGAACTACTTCCGAAACTTGGACCGGAATTGGGAACTGACTGCACCCTGGACCGGGGCTCGGATTCTAGTTCCGGTTAAGTTCATTGTGGGAGACCAAGACCTGGTTTATAATTCCATGGGCGCCAAGGATTACATACACAAAGGTGGGTTCAAGAAATATGTGCCGCTGCTGGAAGAGGTGGTTGTGATGGAAGGAGTTGCACATTTCATCAATGAAGAAAGGCCGGAGGAGATCAATCAACACATTTACGACTTCTTCAAGAAATTTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001676 GO:0002532 GO:0002538 GO:0002539 GO:0003008 GO:0003013 GO:0003674 GO:0003824 GO:0004301 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006954 GO:0007600 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016801 GO:0016803 GO:0019233 GO:0019752 GO:0030258 GO:0032501 GO:0032787 GO:0033559 GO:0042577 GO:0042578 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043651 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045777 GO:0046839 GO:0046872 GO:0050877 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

196

Amino Acids

22.44

Weight (kDa)

5.18

Isoelectric Point (pI)

43.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26740 AT2G26750 AT3G05600 AT3G05600 AT4G15955 AT4G15955
fragaria_vesca	FvH4_2g25390 FvH4_4g18591 FvH4_4g18600 FvH4_4g18600
malus_domestica	MD16G1164900.v1.1 MD16G1165000.v1.1 MD16G1165100.v1.1 MD16G1165300.v1.1 MD16G1165500.v1.1 MD17G1016400.v1.1 MD17G1016500.v1.1
prunus_persica	Prupe.1G124200_v2.0.a1 Prupe.1G124300_v2.0.a1 Prupe.1G124500_v2.0.a1
pyrus_communis	pycom13g14130 pycom16g13960 pycom16g13970 pycom16g13980
rosa_chinensis	RchiOBHm_Chr4g0423281 RchiOBHm_Chr4g0423291 RchiOBHm_Chr4g0423301 RchiOBHm_Chr6g0293571
rosa_laevigata	RLG00000007570 RLG00000007572 RLG00000011940 RLG00000036336
rosa_multiflora	Rmu_co7970336.1_g000001 Rmu_co8074082.1_g000001 Rmu_sc0001290.1_g000009 Rmu_sc0001290.1_g000011 Rmu_sc0002038.1_g000001 Rmu_sc0002038.1_g000010 Rmu_sc0005142.1_g000038 Rmu_sc0006269.1_g000005 Rmu_sc0012160.1_g000002
rosa_roxburghii	Rroxscaffold_5G00365420 Rroxscaffold_5G00365470 Rroxscaffold_5G00365490 Rroxscaffold_7G00174080
rosa_rugosa	Rorug04G0185700 Rorug04G0185800 Rorug04G0185900 Rorug04G0186100 Rorug04G0186200 Rorug06G0236700
rosa_samantha	Rh4AG245400 Rh4AG245500 Rh4AG245600 Rh4BG250700 Rh4BG250900 Rh4BG251000 Rh4CG259000 Rh4CG259200 Rh4CG259400 Rh4DG245400 Rh4DG245600 Rh4DG245700 Rh4DG245800 Rh6CG363400 Rh6DG350300
rosa_wichuraiana	Rw4G021080 Rw4G021090 Rw6G030390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	426
AccB1I	GGYRCC	2 cut(s)	311, 437
AccB7I	CCANNNNNTGG	1 cut(s)	418
AciI	CCGC	4 cut(s)	69, 169, 182, 482
AcsI	RAATTY	2 cut(s)	155, 581
AcyI	GRCGYC	1 cut(s)	438
AfiI	CCNNNNNNNGG	6 cut(s)	334, 346, 368, 369, 375, 418
AflIII	ACRYGT	1 cut(s)	81
AgeI	ACCGGT	1 cut(s)	308
AgsI	TTSAA	4 cut(s)	47, 319, 469, 577
AjnI	CCWGG	2 cut(s)	362, 417
AleI	CACNNNNGTG	1 cut(s)	459
AluBI	AGCT	2 cut(s)	121, 249
AluI	AGCT	2 cut(s)	121, 249
Alw26I	GTCTC	1 cut(s)	402
AoxI	GGCC	1 cut(s)	539
ApeKI	GCWGC	1 cut(s)	484
ApoI	RAATTY	2 cut(s)	155, 581
AsiGI	ACCGGT	1 cut(s)	308
Asp700I	GAANNNNTTC	3 cut(s)	155, 302, 323
AspLEI	GCGC	1 cut(s)	440
AspS9I	GGNCC	3 cut(s)	179, 337, 366
AsuC2I	CCSGG	2 cut(s)	177, 370
AsuHPI	GGTGA	3 cut(s)	83, 116, 298
AvaII	GGWCC	3 cut(s)	179, 337, 366
BanI	GGYRCC	2 cut(s)	311, 437
BanII	GRGCYC	1 cut(s)	376
BbsI	GAAGAC	1 cut(s)	120
BbvI	GCAGC	1 cut(s)	471
BccI	CCATC	1 cut(s)	499
BciT130I	CCWGG	2 cut(s)	364, 419
BclI	TGATCA	1 cut(s)	234
BcnI	CCSGG	2 cut(s)	177, 370
BcoDI	GTCTC	1 cut(s)	402
BfaI	CTAG	3 cut(s)	141, 383, 589
BfoI	RGCGCY	1 cut(s)	441
BisI	GCNGC	2 cut(s)	482, 485
BlsI	GCNGC	2 cut(s)	483, 486
Bme1390I	CCNGG	4 cut(s)	177, 364, 370, 419
Bme18I	GGWCC	3 cut(s)	179, 337, 366
BmgT120I	GGNCC	3 cut(s)	179, 337, 366
BmiI	GGNNCC	2 cut(s)	313, 439
BmrFI	CCNGG	4 cut(s)	177, 364, 370, 419
BmsI	GCATC	1 cut(s)	217
BpiI	GAAGAC	1 cut(s)	120
BpuMI	CCSGG	2 cut(s)	177, 370
BsaHI	GRCGYC	1 cut(s)	438
BsaI	GGTCTC	1 cut(s)	402
BsaJI	CCNNGG	5 cut(s)	130, 362, 369, 432, 441
BsaWI	WCCGGW	3 cut(s)	308, 339, 388
Bsc4I	CCNNNNNNNGG	6 cut(s)	334, 346, 368, 369, 375, 418
Bse118I	RCCGGY	1 cut(s)	308
Bse3DI	GCAATG	1 cut(s)	239
BseBI	CCWGG	2 cut(s)	364, 419
BseDI	CCNNGG	5 cut(s)	130, 362, 369, 432, 441
BseGI	GGATG	1 cut(s)	268
BseLI	CCNNNNNNNGG	6 cut(s)	334, 346, 368, 369, 375, 418
BseMI	GCAATG	1 cut(s)	239
BseMII	CTCAG	1 cut(s)	249
BseRI	GAGGAG	2 cut(s)	308, 560
BseXI	GCAGC	1 cut(s)	471
BsgI	GTGCAG	2 cut(s)	106, 342
BshFI	GGCC	1 cut(s)	541
BshNI	GGYRCC	2 cut(s)	311, 437
BshTI	ACCGGT	1 cut(s)	308
BsiSI	CCGG	6 cut(s)	177, 309, 340, 369, 389, 542
BslI	CCNNNNNNNGG	6 cut(s)	334, 346, 368, 369, 375, 418
BsmAI	GTCTC	1 cut(s)	402
BsnI	GGCC	1 cut(s)	541
Bso31I	GGTCTC	1 cut(s)	402
Bsp1286I	GDGCHC	1 cut(s)	376
Bsp143I	GATC	2 cut(s)	234, 549
Bsp19I	CCATGG	1 cut(s)	432
BspACI	CCGC	4 cut(s)	69, 169, 182, 482
BspANI	GGCC	1 cut(s)	541
BspCNI	CTCAG	1 cut(s)	250
BspHI	TCATGA	1 cut(s)	147
BspLI	GGNNCC	2 cut(s)	313, 439
BspT107I	GGYRCC	2 cut(s)	311, 437
BspTNI	GGTCTC	1 cut(s)	402
BsrDI	GCAATG	1 cut(s)	239
BsrFI	RCCGGY	1 cut(s)	308
BssAI	RCCGGY	1 cut(s)	308
BssECI	CCNNGG	5 cut(s)	130, 362, 369, 432, 441
BssMI	GATC	2 cut(s)	234, 549
BssNI	GRCGYC	1 cut(s)	438
BssT1I	CCWWGG	3 cut(s)	130, 432, 441
Bst2UI	CCWGG	2 cut(s)	364, 419
Bst6I	CTCTTC	1 cut(s)	486
BstACI	GRCGYC	1 cut(s)	438
BstC8I	GCNNGC	3 cut(s)	123, 220, 283
BstDEI	CTNAG	1 cut(s)	258
BstDSI	CCRYGG	1 cut(s)	432
BstF5I	GGATG	1 cut(s)	268
BstH2I	RGCGCY	1 cut(s)	441
BstHHI	GCGC	1 cut(s)	440
BstKTI	GATC	2 cut(s)	237, 552
BstMAI	GTCTC	1 cut(s)	402
BstMBI	GATC	2 cut(s)	234, 549
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstNI	CCWGG	2 cut(s)	364, 419
BstNSI	RCATGY	1 cut(s)	85
BstSCI	CCNGG	4 cut(s)	175, 362, 368, 417
BstV1I	GCAGC	1 cut(s)	471
BstV2I	GAAGAC	1 cut(s)	120
BsuRI	GGCC	1 cut(s)	541
BtgI	CCRYGG	1 cut(s)	432
BtsCI	GGATG	1 cut(s)	268
Cac8I	GCNNGC	3 cut(s)	123, 220, 283
CciI	TCATGA	1 cut(s)	147
CfoI	GCGC	1 cut(s)	440
Cfr10I	RCCGGY	1 cut(s)	308
Cfr13I	GGNCC	3 cut(s)	179, 337, 366
CpoI	CGGWCCG	1 cut(s)	179
CsiI	ACCWGGT	1 cut(s)	417
CspAI	ACCGGT	1 cut(s)	308
CspI	CGGWCCG	1 cut(s)	179
CviAII	CATG	3 cut(s)	82, 148, 433
CviJI	RGCY	8 cut(s)	40, 50, 121, 222, 249, 303, 374, 541
CviKI_1	RGCY	8 cut(s)	40, 50, 121, 222, 249, 303, 374, 541
DdeI	CTNAG	1 cut(s)	258
DinI	GGCGCC	1 cut(s)	439
DpnI	GATC	2 cut(s)	236, 551
DpnII	GATC	2 cut(s)	234, 549
Eam1104I	CTCTTC	1 cut(s)	486
EarI	CTCTTC	1 cut(s)	486
Eco130I	CCWWGG	3 cut(s)	130, 432, 441
Eco24I	GRGCYC	1 cut(s)	376
Eco31I	GGTCTC	1 cut(s)	402
Eco32I	GATATC	1 cut(s)	268
Eco47I	GGWCC	3 cut(s)	179, 337, 366
EcoRI	GAATTC	1 cut(s)	155
EcoRII	CCWGG	2 cut(s)	362, 417
EcoRV	GATATC	1 cut(s)	268
EcoT14I	CCWWGG	3 cut(s)	130, 432, 441
EcoT38I	GRGCYC	1 cut(s)	376
EgeI	GGCGCC	1 cut(s)	439
EheI	GGCGCC	1 cut(s)	439
ErhI	CCWWGG	3 cut(s)	130, 432, 441
FaeI	CATG	3 cut(s)	85, 151, 436
FaiI	YATR	8 cut(s)	66, 83, 110, 149, 426, 434, 452, 477
FalI	AAGNNNNNCTT	2 cut(s)	105, 137
FatI	CATG	3 cut(s)	81, 147, 432
FbaI	TGATCA	1 cut(s)	234
Fnu4HI	GCNGC	2 cut(s)	482, 485
FokI	GGATG	1 cut(s)	275
FriOI	GRGCYC	1 cut(s)	376
Fsp4HI	GCNGC	2 cut(s)	482, 485
FspBI	CTAG	3 cut(s)	141, 383, 589
GlaI	GCGC	1 cut(s)	439
GluI	GCNGC	2 cut(s)	482, 485
HaeII	RGCGCY	1 cut(s)	441
HaeIII	GGCC	1 cut(s)	541
HapII	CCGG	6 cut(s)	177, 309, 340, 369, 389, 542
HhaI	GCGC	1 cut(s)	440
Hin1I	GRCGYC	1 cut(s)	438
Hin1II	CATG	3 cut(s)	85, 151, 436
Hin6I	GCGC	1 cut(s)	438
HinP1I	GCGC	1 cut(s)	438
HinfI	GANTC	1 cut(s)	379
HpaII	CCGG	6 cut(s)	177, 309, 340, 369, 389, 542
HphI	GGTGA	3 cut(s)	83, 116, 298
Hpy188I	TCNGA	4 cut(s)	234, 259, 329, 378
Hpy188III	TCNNGA	4 cut(s)	95, 148, 469, 577
HpyAV	CCTTC	5 cut(s)	22, 95, 145, 292, 503
HpyCH4V	TGCA	3 cut(s)	87, 359, 518
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	1 cut(s)	258
Hsp92I	GRCGYC	1 cut(s)	438
Hsp92II	CATG	3 cut(s)	85, 151, 436
HspAI	GCGC	1 cut(s)	438
KasI	GGCGCC	1 cut(s)	437
Ksp22I	TGATCA	1 cut(s)	234
Kzo9I	GATC	2 cut(s)	234, 549
Lsp1109I	GCAGC	1 cut(s)	471
LweI	GCATC	1 cut(s)	217
MabI	ACCWGGT	1 cut(s)	417
MaeI	CTAG	3 cut(s)	141, 383, 589
MaeIII	GTNAC	2 cut(s)	71, 104
MalI	GATC	2 cut(s)	236, 551
MboI	GATC	2 cut(s)	234, 549
MboII	GAAGA	5 cut(s)	110, 125, 503, 545, 565
MhlI	GDGCHC	1 cut(s)	376
MluCI	AATT	5 cut(s)	155, 286, 343, 427, 581
Mly113I	GGCGCC	1 cut(s)	438
MnlI	CCTC	5 cut(s)	39, 253, 286, 487, 538
MroXI	GAANNNNTTC	3 cut(s)	155, 302, 323
MseI	TTAA	1 cut(s)	393
MslI	CAYNNNNRTG	1 cut(s)	459
MspA1I	CMGCKG	1 cut(s)	484
MspI	CCGG	6 cut(s)	177, 309, 340, 369, 389, 542
MspR9I	CCNGG	4 cut(s)	177, 364, 370, 419
MvaI	CCWGG	2 cut(s)	364, 419
MwoI	GCNNNNNNNGC	1 cut(s)	56
NarI	GGCGCC	1 cut(s)	438
NciI	CCSGG	2 cut(s)	177, 370
NcoI	CCATGG	1 cut(s)	432
NdeII	GATC	2 cut(s)	234, 549
NlaIII	CATG	3 cut(s)	85, 151, 436
NlaIV	GGNNCC	2 cut(s)	313, 439
NmeAIII	GCCGAG	1 cut(s)	270
NmuCI	GTSAC	2 cut(s)	71, 104
NspI	RCATGY	1 cut(s)	85
OliI	CACNNNNGTG	1 cut(s)	459
PagI	TCATGA	1 cut(s)	147
PciI	ACATGT	1 cut(s)	81
PdmI	GAANNNNTTC	3 cut(s)	155, 302, 323
PfeI	GAWTC	1 cut(s)	379
PflMI	CCANNNNNTGG	1 cut(s)	418
PinAI	ACCGGT	1 cut(s)	308
PkrI	GCNGC	2 cut(s)	483, 486
PluTI	GGCGCC	1 cut(s)	441
PscI	ACATGT	1 cut(s)	81
PsiI	TTATAA	1 cut(s)	426
Psp6I	CCWGG	2 cut(s)	362, 417
PspGI	CCWGG	2 cut(s)	362, 417
PspN4I	GGNNCC	2 cut(s)	313, 439
PspPI	GGNCC	3 cut(s)	179, 337, 366
RseI	CAYNNNNRTG	1 cut(s)	459
Rsr2I	CGGWCCG	1 cut(s)	179
RsrII	CGGWCCG	1 cut(s)	179
SaqAI	TTAA	1 cut(s)	393
SatI	GCNGC	2 cut(s)	482, 485
Sau3AI	GATC	2 cut(s)	234, 549
Sau96I	GGNCC	3 cut(s)	179, 337, 366
ScrFI	CCNGG	4 cut(s)	177, 364, 370, 419
SduI	GDGCHC	1 cut(s)	376
SetI	ASST	8 cut(s)	106, 123, 132, 202, 251, 420, 463, 498
SexAI	ACCWGGT	1 cut(s)	417
SfaNI	GCATC	1 cut(s)	217
SfoI	GGCGCC	1 cut(s)	439
SgrAI	CRCCGGYG	1 cut(s)	308
SinI	GGWCC	3 cut(s)	179, 337, 366
SmiMI	CAYNNNNRTG	1 cut(s)	459
Sse9I	AATT	5 cut(s)	155, 286, 343, 427, 581
SsiI	CCGC	4 cut(s)	69, 169, 182, 482
SspDI	GGCGCC	1 cut(s)	437
SspMI	CTAG	3 cut(s)	141, 383, 589
StyD4I	CCNGG	4 cut(s)	175, 362, 368, 417
StyI	CCWWGG	3 cut(s)	130, 432, 441
TaqI	TCGA	1 cut(s)	291
TasI	AATT	5 cut(s)	155, 286, 343, 427, 581
TauI	GCSGC	1 cut(s)	484
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	1 cut(s)	393
Tru9I	TTAA	1 cut(s)	393
TseFI	GTSAC	2 cut(s)	71, 104
TseI	GCWGC	1 cut(s)	484
Tsp45I	GTSAC	2 cut(s)	71, 104
TspDTI	ATGAA	4 cut(s)	164, 388, 514, 546
Van91I	CCANNNNNTGG	1 cut(s)	418
VpaK11BI	GGWCC	3 cut(s)	179, 337, 366
XapI	RAATTY	2 cut(s)	155, 581
XceI	RCATGY	1 cut(s)	85
XmnI	GAANNNNTTC	3 cut(s)	155, 302, 323
XspI	CTAG	3 cut(s)	141, 383, 589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.