Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000795

Physical Location & Seq

Genomic Coordinates Reverse (-)

32297789 .. 32301165

Gene Structure 3377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0185800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGAAGAGGCCGTCCCGCGATACAAGGATCGGAAGCCGTCTTGTACAGGGCGTCCGTTCGATTCTCTCCCTCATCCACCTCGGCTGTTGCAGGGCCGCCGAACTCGGGGTTGGAGAGTCTGTCACTCTGTCCAGCAACCCGTCTCCGCCTCTCTCGCTCTCCGATCTCCGAGTTCCGCCTCCAGGCTCGAGGTATCTCACTATCTCCCTCTCCCTCTCCGTCTCATACTCTTCTCCTCCTCCTGACCTCCTCGGCGAGTCGGCGACGGCTCCTCCCCTCCTCCAGTCCTCCTCTTCTTCTCTTCTGAAGTTCTGGCCTTCTGGGTTTCTGAATTCTAAAATTCTAATATGTTACACGTATTGCAAGTCTATTCAAGTTGCGCAAAACGTGAAGCTTCCCAGAGATGCCACTGGATGCAATTGCAAAGGAAGTTGTGTAGATTCCAAGACCTGCCAATGTGCCAAACTTAACGGGTCTGACTTTCCATATGTGCACCGTGATGGTGGCAGATTAATTGAAGCCAAGGATGTAGTGTTTGAATGTGGGCCAAAATGTGGTTGTGGACCTTCTGTGTCAACCGTACTTCTCAGACGGAGCTCAAGTACCGATTTGAGGTTGTGTTTCACTACAGCTATTTTGGATGTCTTGCAAATACTAATGTTAAGAGATGATGCAGTGACTTATATTAATGATGCTCTGAAACAAGGAACTGAAATTTCTTCATTCCGCAAAGATAAGATAGGAGCAGACGAAAAGAGGACTTCTTATTGGTATGATGGAAATACAATAATAGGTCATAGATTATACAAGGAAGTAACTGTCATTGAGTCGAAGACAAAAGTTAGGGGAAAAGGGTGTTTGAACCTACCAAATATCAGTTTCCAGTGGGAAACACTAGCAACCAATCTCGAGGAATTTCAGAAAGTTATGGATGAACTCTCATCAAGCAAAGTTGCAGGAGAACGTGATGCTGCTAAGACTATTGAAACTGATGCTATTCCTGCTCTTGAGAAACTTCAGAAGTTACAAGACGGCTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001676 GO:0002532 GO:0002538 GO:0002539 GO:0003008 GO:0003013 GO:0003674 GO:0003824 GO:0004301 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006954 GO:0007600 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016801 GO:0016803 GO:0019233 GO:0019752 GO:0030258 GO:0032501 GO:0032787 GO:0033559 GO:0042577 GO:0042578 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043651 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045777 GO:0046839 GO:0046872 GO:0050877 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

346

Amino Acids

37.71

Weight (kDa)

8.65

Isoelectric Point (pI)

48.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pre-SET	PF05033	117 - 188	8.2e-11	Pre-SET motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26740 AT2G26750 AT3G05600 AT3G05600 AT4G15955 AT4G15955
fragaria_vesca	FvH4_2g25390 FvH4_4g18591 FvH4_4g18600 FvH4_4g18600
malus_domestica	MD16G1164900.v1.1 MD16G1165000.v1.1 MD16G1165100.v1.1 MD16G1165300.v1.1 MD16G1165500.v1.1 MD17G1016400.v1.1 MD17G1016500.v1.1
prunus_persica	Prupe.1G124200_v2.0.a1 Prupe.1G124300_v2.0.a1 Prupe.1G124500_v2.0.a1
pyrus_communis	pycom13g14130 pycom16g13960 pycom16g13970 pycom16g13980
rosa_chinensis	RchiOBHm_Chr4g0423281 RchiOBHm_Chr4g0423291 RchiOBHm_Chr4g0423301 RchiOBHm_Chr6g0293571
rosa_laevigata	RLG00000007570 RLG00000007572 RLG00000011940 RLG00000036336
rosa_multiflora	Rmu_co7970336.1_g000001 Rmu_co8074082.1_g000001 Rmu_sc0001290.1_g000009 Rmu_sc0001290.1_g000011 Rmu_sc0002038.1_g000001 Rmu_sc0002038.1_g000010 Rmu_sc0005142.1_g000038 Rmu_sc0006269.1_g000005 Rmu_sc0012160.1_g000002
rosa_roxburghii	Rroxscaffold_5G00365420 Rroxscaffold_5G00365470 Rroxscaffold_5G00365490 Rroxscaffold_7G00174080
rosa_rugosa	Rorug04G0185700 Rorug04G0185800 Rorug04G0185900 Rorug04G0186100 Rorug04G0186200 Rorug06G0236700
rosa_samantha	Rh4AG245400 Rh4AG245500 Rh4AG245600 Rh4BG250700 Rh4BG250900 Rh4BG251000 Rh4CG259000 Rh4CG259200 Rh4CG259400 Rh4DG245400 Rh4DG245600 Rh4DG245700 Rh4DG245800 Rh6CG363400 Rh6DG350300
rosa_wichuraiana	Rw4G021080 Rw4G021090 Rw6G030390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	381
Acc36I	ACCTGC	1 cut(s)	458
AccB7I	CCANNNNNTGG	1 cut(s)	554
AccII	CGCG	1 cut(s)	18
AciI	CCGC	5 cut(s)	16, 96, 146, 176, 727
AclWI	GGATC	1 cut(s)	35
AcsI	RAATTY	4 cut(s)	331, 339, 714, 914
AcuI	CTGAAG	2 cut(s)	326, 1001
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	3 cut(s)	45, 582, 604
AfiI	CCNNNNNNNGG	4 cut(s)	105, 182, 554, 612
AflIII	ACRYGT	1 cut(s)	354
AgsI	TTSAA	5 cut(s)	374, 518, 539, 862, 986
AjnI	CCWGG	1 cut(s)	181
AjuI	GAANNNNNNNTTGG	2 cut(s)	93, 125
AluBI	AGCT	3 cut(s)	394, 597, 632
AluI	AGCT	3 cut(s)	394, 597, 632
Alw21I	GWGCWC	2 cut(s)	495, 599
Alw26I	GTCTC	2 cut(s)	147, 226
Alw44I	GTGCAC	1 cut(s)	491
AlwI	GGATC	1 cut(s)	35
Ama87I	CYCGRG	3 cut(s)	104, 187, 908
AoxI	GGCC	4 cut(s)	8, 93, 314, 545
ApaLI	GTGCAC	1 cut(s)	491
ApeKI	GCWGC	2 cut(s)	971, 1035
ApoI	RAATTY	4 cut(s)	331, 339, 714, 914
AseI	ATTAAT	2 cut(s)	512, 687
AspLEI	GCGC	1 cut(s)	382
AspS9I	GGNCC	3 cut(s)	93, 545, 563
AvaI	CYCGRG	3 cut(s)	104, 187, 908
AvaII	GGWCC	1 cut(s)	563
BaeGI	GKGCMC	1 cut(s)	495
BanII	GRGCYC	1 cut(s)	599
BbsI	GAAGAC	1 cut(s)	839
Bbv12I	GWGCWC	2 cut(s)	495, 599
BbvI	GCAGC	2 cut(s)	958, 1022
BccI	CCATC	2 cut(s)	494, 770
BceAI	ACGGC	2 cut(s)	21, 282
BciT130I	CCWGG	1 cut(s)	183
BcoDI	GTCTC	2 cut(s)	147, 226
BfaI	CTAG	2 cut(s)	896, 1039
BfmI	CTRYAG	1 cut(s)	627
BfuAI	ACCTGC	1 cut(s)	458
BisI	GCNGC	3 cut(s)	96, 972, 1036
BlsI	GCNGC	3 cut(s)	97, 973, 1037
Bme1390I	CCNGG	1 cut(s)	183
Bme18I	GGWCC	1 cut(s)	563
BmeT110I	CYCGRG	3 cut(s)	104, 187, 908
BmgT120I	GGNCC	3 cut(s)	93, 545, 563
BmiI	GGNNCC	1 cut(s)	270
BmrFI	CCNGG	1 cut(s)	183
BmsI	GCATC	6 cut(s)	394, 404, 661, 682, 958, 982
BpiI	GAAGAC	1 cut(s)	839
BpmI	CTGGAG	2 cut(s)	165, 266
BpuEI	CTTGAG	2 cut(s)	583, 1028
BsaAI	YACGTR	1 cut(s)	357
BsaHI	GRCGYC	1 cut(s)	51
BsaJI	CCNNGG	3 cut(s)	79, 250, 522
BsaXI	ACNNNNNCTCC	6 cut(s)	105, 135, 256, 286, 586, 616
Bsc4I	CCNNNNNNNGG	4 cut(s)	105, 182, 554, 612
Bse1I	ACTGG	3 cut(s)	283, 415, 883
BseBI	CCWGG	1 cut(s)	183
BseDI	CCNNGG	3 cut(s)	79, 250, 522
BseGI	GGATG	5 cut(s)	72, 419, 532, 646, 937
BseLI	CCNNNNNNNGG	4 cut(s)	105, 182, 554, 612
BseMII	CTCAG	1 cut(s)	601
BseNI	ACTGG	3 cut(s)	283, 415, 883
BseRI	GAGGAG	6 cut(s)	225, 228, 239, 261, 269, 280
BseSI	GKGCMC	1 cut(s)	495
BseXI	GCAGC	2 cut(s)	958, 1022
Bsh1236I	CGCG	1 cut(s)	18
BshFI	GGCC	4 cut(s)	10, 95, 316, 547
BsiHKAI	GWGCWC	2 cut(s)	495, 599
BsiHKCI	CYCGRG	3 cut(s)	104, 187, 908
BslI	CCNNNNNNNGG	4 cut(s)	105, 182, 554, 612
BsmAI	GTCTC	2 cut(s)	147, 226
BsmBI	CGTCTC	2 cut(s)	147, 226
BsnI	GGCC	4 cut(s)	10, 95, 316, 547
BsoBI	CYCGRG	3 cut(s)	104, 187, 908
Bsp1286I	GDGCHC	2 cut(s)	495, 599
Bsp1407I	TGTACA	1 cut(s)	43
Bsp143I	GATC	2 cut(s)	27, 163
BspACI	CCGC	5 cut(s)	16, 96, 146, 176, 727
BspANI	GGCC	4 cut(s)	10, 95, 316, 547
BspCNI	CTCAG	1 cut(s)	600
BspFNI	CGCG	1 cut(s)	18
BspLI	GGNNCC	1 cut(s)	270
BspMI	ACCTGC	1 cut(s)	458
BspPI	GGATC	1 cut(s)	35
BsrGI	TGTACA	1 cut(s)	43
BsrI	ACTGG	3 cut(s)	283, 415, 883
BssECI	CCNNGG	3 cut(s)	79, 250, 522
BssMI	GATC	2 cut(s)	27, 163
BssNI	GRCGYC	1 cut(s)	51
BssT1I	CCWWGG	1 cut(s)	522
Bst2UI	CCWGG	1 cut(s)	183
Bst4CI	ACNGT	3 cut(s)	497, 580, 820
Bst6I	CTCTTC	3 cut(s)	235, 298, 306
BstACI	GRCGYC	1 cut(s)	51
BstAUI	TGTACA	1 cut(s)	43
BstBAI	YACGTR	1 cut(s)	357
BstDEI	CTNAG	2 cut(s)	587, 975
BstF5I	GGATG	5 cut(s)	72, 419, 532, 646, 937
BstFNI	CGCG	1 cut(s)	18
BstHHI	GCGC	1 cut(s)	382
BstKTI	GATC	2 cut(s)	30, 166
BstMAI	GTCTC	2 cut(s)	147, 226
BstMBI	GATC	2 cut(s)	27, 163
BstMWI	GCNNNNNNNGC	2 cut(s)	154, 1001
BstNI	CCWGG	1 cut(s)	183
BstSCI	CCNGG	1 cut(s)	181
BstSFI	CTRYAG	1 cut(s)	627
BstSLI	GKGCMC	1 cut(s)	495
BstUI	CGCG	1 cut(s)	18
BstV1I	GCAGC	2 cut(s)	958, 1022
BstV2I	GAAGAC	1 cut(s)	839
BsuRI	GGCC	4 cut(s)	10, 95, 316, 547
BtsCI	GGATG	5 cut(s)	72, 419, 532, 646, 937
BtsI	GCAGTG	1 cut(s)	681
BtsIMutI	CAGTG	3 cut(s)	408, 681, 890
BveI	ACCTGC	1 cut(s)	458
CfoI	GCGC	1 cut(s)	382
Cfr13I	GGNCC	3 cut(s)	93, 545, 563
CseI	GACGC	1 cut(s)	40
Csp6I	GTAC	3 cut(s)	44, 581, 603
CviQI	GTAC	3 cut(s)	44, 581, 603
DdeI	CTNAG	2 cut(s)	587, 975
DpnI	GATC	2 cut(s)	29, 165
DpnII	GATC	2 cut(s)	27, 163
Eam1104I	CTCTTC	3 cut(s)	235, 298, 306
EarI	CTCTTC	3 cut(s)	235, 298, 306
EciI	GGCGGA	2 cut(s)	135, 165
Ecl136II	GAGCTC	1 cut(s)	597
Eco130I	CCWWGG	1 cut(s)	522
Eco24I	GRGCYC	1 cut(s)	599
Eco47I	GGWCC	1 cut(s)	563
Eco53kI	GAGCTC	1 cut(s)	597
Eco57I	CTGAAG	2 cut(s)	326, 1001
Eco88I	CYCGRG	3 cut(s)	104, 187, 908
EcoICRI	GAGCTC	1 cut(s)	597
EcoRI	GAATTC	1 cut(s)	331
EcoRII	CCWGG	1 cut(s)	181
EcoT14I	CCWWGG	1 cut(s)	522
EcoT38I	GRGCYC	1 cut(s)	599
ErhI	CCWWGG	1 cut(s)	522
Esp3I	CGTCTC	2 cut(s)	147, 226
FaiI	YATR	9 cut(s)	226, 349, 487, 489, 684, 774, 798, 805, 929
FauI	CCCGC	1 cut(s)	23
FauNDI	CATATG	1 cut(s)	487
Fnu4HI	GCNGC	3 cut(s)	96, 972, 1036
FokI	GGATG	5 cut(s)	59, 426, 539, 653, 944
FriOI	GRGCYC	1 cut(s)	599
Fsp4HI	GCNGC	3 cut(s)	96, 972, 1036
FspBI	CTAG	2 cut(s)	896, 1039
FspI	TGCGCA	1 cut(s)	381
GlaI	GCGC	1 cut(s)	381
GluI	GCNGC	3 cut(s)	96, 972, 1036
GsuI	CTGGAG	2 cut(s)	165, 266
HaeIII	GGCC	4 cut(s)	10, 95, 316, 547
HgaI	GACGC	1 cut(s)	40
HhaI	GCGC	1 cut(s)	382
Hin1I	GRCGYC	1 cut(s)	51
Hin6I	GCGC	1 cut(s)	380
HinP1I	GCGC	1 cut(s)	380
HincII	GTYRAC	1 cut(s)	576
HindII	GTYRAC	1 cut(s)	576
HindIII	AAGCTT	1 cut(s)	392
HinfI	GANTC	5 cut(s)	61, 116, 257, 440, 827
Hpy166II	GTNNAC	3 cut(s)	493, 563, 576
Hpy188III	TCNNGA	3 cut(s)	242, 908, 1007
Hpy8I	GTNNAC	3 cut(s)	493, 563, 576
Hpy99I	CGWCG	1 cut(s)	268
HpyAV	CCTTC	2 cut(s)	327, 576
HpyCH4III	ACNGT	3 cut(s)	497, 580, 820
HpyCH4IV	ACGT	3 cut(s)	356, 387, 964
HpyCH4V	TGCA	8 cut(s)	90, 363, 417, 423, 493, 649, 674, 956
HpyF10VI	GCNNNNNNNGC	2 cut(s)	154, 1001
HpyF3I	CTNAG	2 cut(s)	587, 975
HpySE526I	ACGT	3 cut(s)	356, 387, 964
Hsp92I	GRCGYC	1 cut(s)	51
HspAI	GCGC	1 cut(s)	380
Kzo9I	GATC	2 cut(s)	27, 163
LmnI	GCTCC	3 cut(s)	274, 594, 743
Lsp1109I	GCAGC	2 cut(s)	958, 1022
LweI	GCATC	6 cut(s)	394, 404, 661, 682, 958, 982
MaeI	CTAG	2 cut(s)	896, 1039
MaeII	ACGT	3 cut(s)	356, 387, 964
MaeIII	GTNAC	5 cut(s)	121, 350, 676, 814, 1023
MalI	GATC	2 cut(s)	29, 165
MboI	GATC	2 cut(s)	27, 163
MboII	GAAGA	7 cut(s)	16, 222, 285, 288, 293, 711, 844
MfeI	CAATTG	1 cut(s)	418
MhlI	GDGCHC	2 cut(s)	495, 599
MluCI	AATT	6 cut(s)	331, 339, 418, 513, 714, 914
MlyI	GAGTC	3 cut(s)	125, 266, 836
MmeI	TCCRAC	1 cut(s)	91
MseI	TTAA	4 cut(s)	468, 512, 662, 687
MslI	CAYNNNNRTG	1 cut(s)	498
MspR9I	CCNGG	1 cut(s)	183
MunI	CAATTG	1 cut(s)	418
MvaI	CCWGG	1 cut(s)	183
MvnI	CGCG	1 cut(s)	18
MwoI	GCNNNNNNNGC	2 cut(s)	154, 1001
NdeI	CATATG	1 cut(s)	487
NdeII	GATC	2 cut(s)	27, 163
NlaIV	GGNNCC	1 cut(s)	270
NmeAIII	GCCGAG	2 cut(s)	60, 231
NmuCI	GTSAC	2 cut(s)	121, 676
NsbI	TGCGCA	1 cut(s)	381
PaeR7I	CTCGAG	2 cut(s)	187, 908
PfeI	GAWTC	2 cut(s)	61, 440
PflMI	CCANNNNNTGG	1 cut(s)	554
PkrI	GCNGC	3 cut(s)	97, 973, 1037
PleI	GAGTC	3 cut(s)	124, 265, 835
PpsI	GAGTC	3 cut(s)	124, 265, 835
Ppu21I	YACGTR	1 cut(s)	357
PshBI	ATTAAT	2 cut(s)	512, 687
Psp124BI	GAGCTC	1 cut(s)	599
Psp6I	CCWGG	1 cut(s)	181
PspGI	CCWGG	1 cut(s)	181
PspN4I	GGNNCC	1 cut(s)	270
PspPI	GGNCC	3 cut(s)	93, 545, 563
PspXI	VCTCGAGB	1 cut(s)	187
RsaI	GTAC	3 cut(s)	45, 582, 604
RsaNI	GTAC	3 cut(s)	44, 581, 603
RseI	CAYNNNNRTG	1 cut(s)	498
SacI	GAGCTC	1 cut(s)	599
SaqAI	TTAA	4 cut(s)	468, 512, 662, 687
SatI	GCNGC	3 cut(s)	96, 972, 1036
Sau3AI	GATC	2 cut(s)	27, 163
Sau96I	GGNCC	3 cut(s)	93, 545, 563
SchI	GAGTC	3 cut(s)	125, 266, 836
ScrFI	CCNGG	1 cut(s)	183
SduI	GDGCHC	2 cut(s)	495, 599
SfaNI	GCATC	6 cut(s)	394, 404, 661, 682, 958, 982
SfcI	CTRYAG	1 cut(s)	627
Sfr274I	CTCGAG	2 cut(s)	187, 908
SinI	GGWCC	1 cut(s)	563
SlaI	CTCGAG	2 cut(s)	187, 908
SmiMI	CAYNNNNRTG	1 cut(s)	498
SmlI	CTYRAG	4 cut(s)	187, 598, 908, 1007
SmoI	CTYRAG	4 cut(s)	187, 598, 908, 1007
Sse9I	AATT	6 cut(s)	331, 339, 418, 513, 714, 914
SsiI	CCGC	5 cut(s)	16, 96, 146, 176, 727
SspMI	CTAG	2 cut(s)	896, 1039
SstI	GAGCTC	1 cut(s)	599
StyD4I	CCNGG	1 cut(s)	181
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	3 cut(s)	497, 580, 820
TaiI	ACGT	3 cut(s)	359, 390, 967
TaqI	TCGA	4 cut(s)	59, 188, 830, 909
TasI	AATT	6 cut(s)	331, 339, 418, 513, 714, 914
TatI	WGTACW	1 cut(s)	43
TauI	GCSGC	1 cut(s)	98
TfiI	GAWTC	2 cut(s)	61, 440
Tru1I	TTAA	4 cut(s)	468, 512, 662, 687
Tru9I	TTAA	4 cut(s)	468, 512, 662, 687
TscAI	CASTG	3 cut(s)	415, 681, 890
TseFI	GTSAC	2 cut(s)	121, 676
TseI	GCWGC	2 cut(s)	971, 1035
Tsp45I	GTSAC	2 cut(s)	121, 676
TspDTI	ATGAA	3 cut(s)	17, 711, 948
TspGWI	ACGGA	3 cut(s)	44, 208, 607
TspRI	CASTG	3 cut(s)	415, 681, 890
Van91I	CCANNNNNTGG	1 cut(s)	554
VneI	GTGCAC	1 cut(s)	491
VpaK11BI	GGWCC	1 cut(s)	563
VspI	ATTAAT	2 cut(s)	512, 687
XapI	RAATTY	4 cut(s)	331, 339, 714, 914
XhoI	CTCGAG	2 cut(s)	187, 908
XspI	CTAG	2 cut(s)	896, 1039

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.