Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005142.1

Orthogroup ID

OG0000795

Physical Location & Seq

Genomic Coordinates Reverse (-)

173260 .. 173736

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005142.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atggagggagtagagcacagaacgatcaaagtcaacggcatcaacatgcacgtagccgagaaaggccaaggcccggtggtcctattcctccacggcttcccggagctctggtactcatggaggcaccaaatccagaccctggcctcgctcggataccgagccgtggcgccggacctccgcggcttcggtgacaccgacgcgccggcctactcgtcgagctacacttgcttccacgtggtgggagatctcgtggcgctattggacgccgtcgccggcgaccaggagaaggtattcgtggtcgggcacgactggggggcaatcatggcttggtatctctgcccgtttctgccggaccgagttaaggctctggtcaacttgagcgtgcaattctttcctagaaatcctcaggtgaagtttgttgaatccatgaaagctgcttatggggacgactattatatttgcagatttcaggtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001676 GO:0002532 GO:0002538 GO:0002539 GO:0003008 GO:0003013 GO:0003674 GO:0003824 GO:0004301 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006954 GO:0007600 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016801 GO:0016803 GO:0019233 GO:0019752 GO:0030258 GO:0032501 GO:0032787 GO:0033559 GO:0042577 GO:0042578 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043651 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045777 GO:0046839 GO:0046872 GO:0050877 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

158

Amino Acids

17.79

Weight (kDa)

6.03

Isoelectric Point (pI)

22.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26740 AT2G26750 AT3G05600 AT3G05600 AT4G15955 AT4G15955
fragaria_vesca	FvH4_2g25390 FvH4_4g18591 FvH4_4g18600 FvH4_4g18600
malus_domestica	MD16G1164900.v1.1 MD16G1165000.v1.1 MD16G1165100.v1.1 MD16G1165300.v1.1 MD16G1165500.v1.1 MD17G1016400.v1.1 MD17G1016500.v1.1
prunus_persica	Prupe.1G124200_v2.0.a1 Prupe.1G124300_v2.0.a1 Prupe.1G124500_v2.0.a1
pyrus_communis	pycom13g14130 pycom16g13960 pycom16g13970 pycom16g13980
rosa_chinensis	RchiOBHm_Chr4g0423281 RchiOBHm_Chr4g0423291 RchiOBHm_Chr4g0423301 RchiOBHm_Chr6g0293571
rosa_laevigata	RLG00000007570 RLG00000007572 RLG00000011940 RLG00000036336
rosa_multiflora	Rmu_co7970336.1_g000001 Rmu_co8074082.1_g000001 Rmu_sc0001290.1_g000009 Rmu_sc0001290.1_g000011 Rmu_sc0002038.1_g000001 Rmu_sc0002038.1_g000010 Rmu_sc0005142.1_g000038 Rmu_sc0006269.1_g000005 Rmu_sc0012160.1_g000002
rosa_roxburghii	Rroxscaffold_5G00365420 Rroxscaffold_5G00365470 Rroxscaffold_5G00365490 Rroxscaffold_7G00174080
rosa_rugosa	Rorug04G0185700 Rorug04G0185800 Rorug04G0185900 Rorug04G0186100 Rorug04G0186200 Rorug06G0236700
rosa_samantha	Rh4AG245400 Rh4AG245500 Rh4AG245600 Rh4BG250700 Rh4BG250900 Rh4BG251000 Rh4CG259000 Rh4CG259200 Rh4CG259400 Rh4DG245400 Rh4DG245600 Rh4DG245700 Rh4DG245800 Rh6CG363400 Rh6DG350300
rosa_wichuraiana	Rw4G021080 Rw4G021090 Rw6G030390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	123, 166
AccB7I	CCANNNNNTGG	2 cut(s)	139, 238
AccII	CGCG	2 cut(s)	180, 200
AciI	CCGC	2 cut(s)	178, 180
AcvI	CACGTG	1 cut(s)	235
AcyI	GRCGYC	2 cut(s)	167, 264
AdeI	CACNNNGTG	1 cut(s)	238
AfaI	GTAC	1 cut(s)	113
AfiI	CCNNNNNNNGG	6 cut(s)	73, 139, 163, 238, 286, 361
AgsI	TTSAA	1 cut(s)	422
AjnI	CCWGG	2 cut(s)	138, 279
AluBI	AGCT	3 cut(s)	106, 219, 434
AluI	AGCT	3 cut(s)	106, 219, 434
Alw21I	GWGCWC	2 cut(s)	18, 108
AlwNI	CAGNNNCTG	1 cut(s)	139
AoxI	GGCC	4 cut(s)	64, 70, 141, 204
ApeKI	GCWGC	1 cut(s)	434
Asp700I	GAANNNNTTC	1 cut(s)	290
AspLEI	GCGC	3 cut(s)	169, 202, 256
AspS9I	GGNCC	4 cut(s)	71, 79, 172, 352
AsuC2I	CCSGG	2 cut(s)	74, 101
AsuHPI	GGTGA	2 cut(s)	200, 421
AvaII	GGWCC	3 cut(s)	79, 172, 352
AxyI	CCTNAGG	1 cut(s)	405
BaeGI	GKGCMC	1 cut(s)	306
BanI	GGYRCC	2 cut(s)	123, 166
BanII	GRGCYC	1 cut(s)	108
BauI	CACGAG	1 cut(s)	248
BbrPI	CACGTG	1 cut(s)	235
Bbv12I	GWGCWC	2 cut(s)	18, 108
BbvI	GCAGC	1 cut(s)	421
BceAI	ACGGC	4 cut(s)	52, 109, 146, 251
BciT130I	CCWGG	2 cut(s)	140, 281
BciVI	GTATCC	1 cut(s)	146
BcnI	CCSGG	2 cut(s)	74, 101
BfaI	CTAG	1 cut(s)	396
BfoI	RGCGCY	2 cut(s)	170, 257
BfuI	GTATCC	1 cut(s)	146
BglII	AGATCT	1 cut(s)	244
BisI	GCNGC	2 cut(s)	181, 435
BlsI	GCNGC	2 cut(s)	182, 436
Bme1390I	CCNGG	4 cut(s)	74, 101, 140, 281
Bme18I	GGWCC	3 cut(s)	79, 172, 352
BmgT120I	GGNCC	4 cut(s)	71, 79, 172, 352
BmiI	GGNNCC	2 cut(s)	125, 168
BmrFI	CCNGG	4 cut(s)	74, 101, 140, 281
BmrI	ACTGGG	1 cut(s)	319
BmsI	GCATC	1 cut(s)	48
BmuI	ACTGGG	1 cut(s)	319
BpuEI	CTTGAG	1 cut(s)	397
BpuMI	CCSGG	2 cut(s)	74, 101
BsaAI	YACGTR	2 cut(s)	52, 235
BsaHI	GRCGYC	2 cut(s)	167, 264
BsaJI	CCNNGG	5 cut(s)	67, 91, 138, 162, 178
BsaXI	ACNNNNNCTCC	4 cut(s)	95, 125, 234, 264
Bsc4I	CCNNNNNNNGG	6 cut(s)	73, 139, 163, 238, 286, 361
Bse118I	RCCGGY	2 cut(s)	202, 272
Bse1I	ACTGG	1 cut(s)	314
Bse21I	CCTNAGG	1 cut(s)	405
BseBI	CCWGG	2 cut(s)	140, 281
BseDI	CCNNGG	5 cut(s)	67, 91, 138, 162, 178
BseLI	CCNNNNNNNGG	6 cut(s)	73, 139, 163, 238, 286, 361
BseMII	CTCAG	1 cut(s)	419
BseNI	ACTGG	1 cut(s)	314
BseSI	GKGCMC	1 cut(s)	306
BseXI	GCAGC	1 cut(s)	421
Bsh1236I	CGCG	2 cut(s)	180, 200
BshFI	GGCC	4 cut(s)	66, 72, 143, 206
BshNI	GGYRCC	2 cut(s)	123, 166
BsiHKAI	GWGCWC	2 cut(s)	18, 108
BsiSI	CCGG	6 cut(s)	74, 101, 170, 203, 273, 350
BslFI	GGGAC	1 cut(s)	458
BslI	CCNNNNNNNGG	6 cut(s)	73, 139, 163, 238, 286, 361
BsmFI	GGGAC	1 cut(s)	458
BsnI	GGCC	4 cut(s)	66, 72, 143, 206
Bsp1286I	GDGCHC	3 cut(s)	18, 108, 306
Bsp143I	GATC	2 cut(s)	24, 244
BspACI	CCGC	2 cut(s)	178, 180
BspANI	GGCC	4 cut(s)	66, 72, 143, 206
BspCNI	CTCAG	1 cut(s)	418
BspFNI	CGCG	2 cut(s)	180, 200
BspLI	GGNNCC	2 cut(s)	125, 168
BspT107I	GGYRCC	2 cut(s)	123, 166
BsrFI	RCCGGY	2 cut(s)	202, 272
BsrI	ACTGG	1 cut(s)	314
BssAI	RCCGGY	2 cut(s)	202, 272
BssECI	CCNNGG	5 cut(s)	67, 91, 138, 162, 178
BssMI	GATC	2 cut(s)	24, 244
BssNI	GRCGYC	2 cut(s)	167, 264
BssSI	CACGAG	1 cut(s)	248
BssT1I	CCWWGG	1 cut(s)	67
Bst2BI	CACGAG	1 cut(s)	248
Bst2UI	CCWGG	2 cut(s)	140, 281
BstACI	GRCGYC	2 cut(s)	167, 264
BstBAI	YACGTR	2 cut(s)	52, 235
BstC8I	GCNNGC	3 cut(s)	204, 274, 383
BstDEI	CTNAG	1 cut(s)	405
BstDSI	CCRYGG	3 cut(s)	91, 162, 178
BstFNI	CGCG	2 cut(s)	180, 200
BstH2I	RGCGCY	2 cut(s)	170, 257
BstHHI	GCGC	3 cut(s)	169, 202, 256
BstKTI	GATC	2 cut(s)	27, 247
BstMBI	GATC	2 cut(s)	24, 244
BstMWI	GCNNNNNNNGC	2 cut(s)	225, 323
BstNI	CCWGG	2 cut(s)	140, 281
BstNSI	RCATGY	1 cut(s)	49
BstSCI	CCNGG	4 cut(s)	72, 99, 138, 279
BstSLI	GKGCMC	1 cut(s)	306
BstUI	CGCG	2 cut(s)	180, 200
BstV1I	GCAGC	1 cut(s)	421
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
Bsu36I	CCTNAGG	1 cut(s)	405
BsuI	GTATCC	1 cut(s)	146
BsuRI	GGCC	4 cut(s)	66, 72, 143, 206
BtgI	CCRYGG	3 cut(s)	91, 162, 178
Cac8I	GCNNGC	3 cut(s)	204, 274, 383
CaiI	CAGNNNCTG	1 cut(s)	139
CfoI	GCGC	3 cut(s)	169, 202, 256
Cfr10I	RCCGGY	2 cut(s)	202, 272
Cfr13I	GGNCC	4 cut(s)	71, 79, 172, 352
Cfr42I	CCGCGG	1 cut(s)	181
CpoI	CGGWCCG	1 cut(s)	352
CseI	GACGC	2 cut(s)	206, 272
Csp6I	GTAC	1 cut(s)	112
CspI	CGGWCCG	1 cut(s)	352
CviAII	CATG	4 cut(s)	46, 117, 322, 427
CviQI	GTAC	1 cut(s)	112
DdeI	CTNAG	1 cut(s)	405
DinI	GGCGCC	1 cut(s)	168
DpnI	GATC	2 cut(s)	26, 246
DpnII	GATC	2 cut(s)	24, 244
DraIII	CACNNNGTG	1 cut(s)	238
Ecl136II	GAGCTC	1 cut(s)	106
Eco130I	CCWWGG	1 cut(s)	67
Eco24I	GRGCYC	1 cut(s)	108
Eco47I	GGWCC	3 cut(s)	79, 172, 352
Eco53kI	GAGCTC	1 cut(s)	106
Eco72I	CACGTG	1 cut(s)	235
Eco81I	CCTNAGG	1 cut(s)	405
EcoICRI	GAGCTC	1 cut(s)	106
EcoRII	CCWGG	2 cut(s)	138, 279
EcoT14I	CCWWGG	1 cut(s)	67
EcoT38I	GRGCYC	1 cut(s)	108
EgeI	GGCGCC	1 cut(s)	168
EheI	GGCGCC	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	67
FaeI	CATG	4 cut(s)	49, 120, 325, 430
FaiI	YATR	6 cut(s)	47, 118, 323, 428, 441, 456
FaqI	GGGAC	1 cut(s)	458
FatI	CATG	4 cut(s)	45, 116, 321, 426
Fnu4HI	GCNGC	2 cut(s)	181, 435
FriOI	GRGCYC	1 cut(s)	108
Fsp4HI	GCNGC	2 cut(s)	181, 435
FspBI	CTAG	1 cut(s)	396
GlaI	GCGC	3 cut(s)	168, 201, 255
GluI	GCNGC	2 cut(s)	181, 435
HaeII	RGCGCY	2 cut(s)	170, 257
HaeIII	GGCC	4 cut(s)	66, 72, 143, 206
HapII	CCGG	6 cut(s)	74, 101, 170, 203, 273, 350
HgaI	GACGC	2 cut(s)	206, 272
HhaI	GCGC	3 cut(s)	169, 202, 256
Hin1I	GRCGYC	2 cut(s)	167, 264
Hin1II	CATG	4 cut(s)	49, 120, 325, 430
Hin6I	GCGC	3 cut(s)	167, 200, 254
HinP1I	GCGC	3 cut(s)	167, 200, 254
HincII	GTYRAC	2 cut(s)	34, 373
HindII	GTYRAC	2 cut(s)	34, 373
HinfI	GANTC	1 cut(s)	422
HpaII	CCGG	6 cut(s)	74, 101, 170, 203, 273, 350
HphI	GGTGA	2 cut(s)	200, 421
Hpy166II	GTNNAC	2 cut(s)	34, 373
Hpy188I	TCNGA	1 cut(s)	152
Hpy188III	TCNNGA	1 cut(s)	133
Hpy8I	GTNNAC	2 cut(s)	34, 373
Hpy99I	CGWCG	3 cut(s)	200, 217, 272
HpyAV	CCTTC	1 cut(s)	280
HpyCH4IV	ACGT	2 cut(s)	51, 234
HpyCH4V	TGCA	3 cut(s)	49, 385, 462
HpyF10VI	GCNNNNNNNGC	2 cut(s)	225, 323
HpyF3I	CTNAG	1 cut(s)	405
HpySE526I	ACGT	2 cut(s)	51, 234
Hsp92I	GRCGYC	2 cut(s)	167, 264
Hsp92II	CATG	4 cut(s)	49, 120, 325, 430
HspAI	GCGC	3 cut(s)	167, 200, 254
KasI	GGCGCC	1 cut(s)	166
KroI	GCCGGC	2 cut(s)	202, 272
KroNI	GCCGGC	2 cut(s)	204, 274
KspI	CCGCGG	1 cut(s)	181
Kzo9I	GATC	2 cut(s)	24, 244
LmnI	GCTCC	1 cut(s)	103
Lsp1109I	GCAGC	1 cut(s)	421
LweI	GCATC	1 cut(s)	48
MaeI	CTAG	1 cut(s)	396
MaeII	ACGT	2 cut(s)	51, 234
MaeIII	GTNAC	1 cut(s)	188
MalI	GATC	2 cut(s)	26, 246
MboI	GATC	2 cut(s)	24, 244
MflI	RGATCY	1 cut(s)	244
MhlI	GDGCHC	3 cut(s)	18, 108, 306
MluCI	AATT	1 cut(s)	386
Mly113I	GGCGCC	1 cut(s)	167
MnlI	CCTC	5 cut(s)	98, 114, 154, 185, 414
MreI	CGCCGGCG	1 cut(s)	272
MroNI	GCCGGC	2 cut(s)	202, 272
MroXI	GAANNNNTTC	1 cut(s)	290
MseI	TTAA	1 cut(s)	360
MslI	CAYNNNNRTG	1 cut(s)	44
MspA1I	CMGCKG	1 cut(s)	180
MspI	CCGG	6 cut(s)	74, 101, 170, 203, 273, 350
MspR9I	CCNGG	4 cut(s)	74, 101, 140, 281
MvaI	CCWGG	2 cut(s)	140, 281
MvnI	CGCG	2 cut(s)	180, 200
MwoI	GCNNNNNNNGC	2 cut(s)	225, 323
NaeI	GCCGGC	2 cut(s)	204, 274
NarI	GGCGCC	1 cut(s)	167
NciI	CCSGG	2 cut(s)	74, 101
NdeII	GATC	2 cut(s)	24, 244
NgoMIV	GCCGGC	2 cut(s)	202, 272
NlaIII	CATG	4 cut(s)	49, 120, 325, 430
NlaIV	GGNNCC	2 cut(s)	125, 168
NmeAIII	GCCGAG	1 cut(s)	82
NmuCI	GTSAC	1 cut(s)	188
NspI	RCATGY	1 cut(s)	49
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PdiI	GCCGGC	2 cut(s)	204, 274
PdmI	GAANNNNTTC	1 cut(s)	290
PfeI	GAWTC	1 cut(s)	422
PflFI	GACNNNGTC	1 cut(s)	266
PflMI	CCANNNNNTGG	2 cut(s)	139, 238
PfoI	TCCNGGA	1 cut(s)	99
PkrI	GCNGC	2 cut(s)	182, 436
PluTI	GGCGCC	1 cut(s)	170
PmaCI	CACGTG	1 cut(s)	235
PmlI	CACGTG	1 cut(s)	235
Ppu21I	YACGTR	2 cut(s)	52, 235
Psp124BI	GAGCTC	1 cut(s)	108
Psp6I	CCWGG	2 cut(s)	138, 279
PspCI	CACGTG	1 cut(s)	235
PspGI	CCWGG	2 cut(s)	138, 279
PspN4I	GGNNCC	2 cut(s)	125, 168
PspPI	GGNCC	4 cut(s)	71, 79, 172, 352
PstNI	CAGNNNCTG	1 cut(s)	139
PsuI	RGATCY	1 cut(s)	244
PsyI	GACNNNGTC	1 cut(s)	266
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
RseI	CAYNNNNRTG	1 cut(s)	44
Rsr2I	CGGWCCG	1 cut(s)	352
RsrII	CGGWCCG	1 cut(s)	352
SacI	GAGCTC	1 cut(s)	108
SacII	CCGCGG	1 cut(s)	181
SaqAI	TTAA	1 cut(s)	360
SatI	GCNGC	2 cut(s)	181, 435
Sau3AI	GATC	2 cut(s)	24, 244
Sau96I	GGNCC	4 cut(s)	71, 79, 172, 352
ScrFI	CCNGG	4 cut(s)	74, 101, 140, 281
SduI	GDGCHC	3 cut(s)	18, 108, 306
SetI	ASST	9 cut(s)	54, 108, 177, 221, 237, 291, 411, 436, 474
SfaNI	GCATC	1 cut(s)	48
SfoI	GGCGCC	1 cut(s)	168
Sfr303I	CCGCGG	1 cut(s)	181
SgrAI	CRCCGGYG	1 cut(s)	272
SgrBI	CCGCGG	1 cut(s)	181
SinI	GGWCC	3 cut(s)	79, 172, 352
SmiMI	CAYNNNNRTG	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	376
SmoI	CTYRAG	1 cut(s)	376
Sse9I	AATT	1 cut(s)	386
SsiI	CCGC	2 cut(s)	178, 180
SspDI	GGCGCC	1 cut(s)	166
SspMI	CTAG	1 cut(s)	396
SstI	GAGCTC	1 cut(s)	108
StyD4I	CCNGG	4 cut(s)	72, 99, 138, 279
StyI	CCWWGG	1 cut(s)	67
TaiI	ACGT	2 cut(s)	54, 237
TaqI	TCGA	1 cut(s)	215
TaqII	GACCGA	1 cut(s)	369
TasI	AATT	1 cut(s)	386
TauI	GCSGC	1 cut(s)	183
TfiI	GAWTC	1 cut(s)	422
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TseFI	GTSAC	1 cut(s)	188
TseI	GCWGC	1 cut(s)	434
Tsp45I	GTSAC	1 cut(s)	188
TspDTI	ATGAA	1 cut(s)	443
Tth111I	GACNNNGTC	1 cut(s)	266
Van91I	CCANNNNNTGG	2 cut(s)	139, 238
VpaK11BI	GGWCC	3 cut(s)	79, 172, 352
XceI	RCATGY	1 cut(s)	49
XmnI	GAANNNNTTC	1 cut(s)	290
XspI	CTAG	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.