Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0000795

Physical Location & Seq

Genomic Coordinates Forward (+)

13706107 .. 13706735

Gene Structure 629 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1165300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGGCACTAGAAGAGTTATCAAGGAGTTTCTAAAATATAGGAATCCTGGTCCACTTTTCCTGCCTAAAGGCAATGGTTTTGGACATCCCACAGATACTCCTATTGTCTTGCCAAGTTGGTTGTCTGGGATGAAAAATTGGGAACTAACTGCACCATGGACGGGGGCTCAAGTGAAAGTTCCAGTGAAGTTTGTTGTGGGAGACCAGGACCTAGTTTACAAATCTTTAGGTGCCAAGGACTTCATACACAAAGGCGGGTTCAAGAAATTTGTGCCGCTTCTGGAAGAAGTAGTTGTGCTGGAAGAAGTTGCCCATTGTATTCAACTAGAAAAGCCTGATGAAATCAGCAAACACATTCACGATTTCATCAAGAAATTCCATTTGCCATATGTCCTTGTGTCGATGCTAGCTATTGCCTACTGGTGTTTCAGTTATGCATTTCTTGCCTCGGAGTTTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001676 GO:0002532 GO:0002538 GO:0002539 GO:0003008 GO:0003013 GO:0003674 GO:0003824 GO:0004301 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006954 GO:0007600 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016801 GO:0016803 GO:0019233 GO:0019752 GO:0030258 GO:0032501 GO:0032787 GO:0033559 GO:0042577 GO:0042578 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043651 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045777 GO:0046839 GO:0046872 GO:0050877 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

154

Amino Acids

17.45

Weight (kDa)

8.48

Isoelectric Point (pI)

23.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26740 AT2G26750 AT3G05600 AT3G05600 AT4G15955 AT4G15955
fragaria_vesca	FvH4_2g25390 FvH4_4g18591 FvH4_4g18600 FvH4_4g18600
malus_domestica	MD16G1164900.v1.1 MD16G1165000.v1.1 MD16G1165100.v1.1 MD16G1165300.v1.1 MD16G1165500.v1.1 MD17G1016400.v1.1 MD17G1016500.v1.1
prunus_persica	Prupe.1G124200_v2.0.a1 Prupe.1G124300_v2.0.a1 Prupe.1G124500_v2.0.a1
pyrus_communis	pycom13g14130 pycom16g13960 pycom16g13970 pycom16g13980
rosa_chinensis	RchiOBHm_Chr4g0423281 RchiOBHm_Chr4g0423291 RchiOBHm_Chr4g0423301 RchiOBHm_Chr6g0293571
rosa_laevigata	RLG00000007570 RLG00000007572 RLG00000011940 RLG00000036336
rosa_multiflora	Rmu_co7970336.1_g000001 Rmu_co8074082.1_g000001 Rmu_sc0001290.1_g000009 Rmu_sc0001290.1_g000011 Rmu_sc0002038.1_g000001 Rmu_sc0002038.1_g000010 Rmu_sc0005142.1_g000038 Rmu_sc0006269.1_g000005 Rmu_sc0012160.1_g000002
rosa_roxburghii	Rroxscaffold_5G00365420 Rroxscaffold_5G00365470 Rroxscaffold_5G00365490 Rroxscaffold_7G00174080
rosa_rugosa	Rorug04G0185700 Rorug04G0185800 Rorug04G0185900 Rorug04G0186100 Rorug04G0186200 Rorug06G0236700
rosa_samantha	Rh4AG245400 Rh4AG245500 Rh4AG245600 Rh4BG250700 Rh4BG250900 Rh4BG251000 Rh4CG259000 Rh4CG259200 Rh4CG259400 Rh4DG245400 Rh4DG245600 Rh4DG245700 Rh4DG245800 Rh6CG363400 Rh6DG350300
rosa_wichuraiana	Rw4G021080 Rw4G021090 Rw6G030390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	230
AciI	CCGC	2 cut(s)	255, 275
AcsI	RAATTY	2 cut(s)	266, 374
AfiI	CCNNNNNNNGG	1 cut(s)	161
AgsI	TTSAA	3 cut(s)	262, 323, 458
AjnI	CCWGG	2 cut(s)	46, 204
AluBI	AGCT	1 cut(s)	410
AluI	AGCT	1 cut(s)	410
Alw26I	GTCTC	1 cut(s)	195
ApoI	RAATTY	2 cut(s)	266, 374
AspS9I	GGNCC	2 cut(s)	50, 208
AsuNHI	GCTAGC	1 cut(s)	406
AvaII	GGWCC	2 cut(s)	50, 208
BaeGI	GKGCMC	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	169
BciT130I	CCWGG	2 cut(s)	48, 206
BcoDI	GTCTC	1 cut(s)	195
BfaI	CTAG	4 cut(s)	9, 212, 326, 407
BisI	GCNGC	1 cut(s)	275
BlsI	GCNGC	1 cut(s)	276
Bme1390I	CCNGG	2 cut(s)	48, 206
Bme18I	GGWCC	2 cut(s)	50, 208
BmgT120I	GGNCC	2 cut(s)	50, 208
BmiI	GGNNCC	1 cut(s)	232
BmrFI	CCNGG	2 cut(s)	48, 206
BmsI	GCATC	1 cut(s)	393
BmtI	GCTAGC	1 cut(s)	410
BpuEI	CTTGAG	1 cut(s)	153
BsaI	GGTCTC	1 cut(s)	195
BsaJI	CCNNGG	3 cut(s)	155, 234, 447
BsaXI	ACNNNNNCTCC	2 cut(s)	82, 112
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse1I	ACTGG	2 cut(s)	182, 425
Bse3DI	GCAATG	1 cut(s)	79
BseBI	CCWGG	2 cut(s)	48, 206
BseDI	CCNNGG	3 cut(s)	155, 234, 447
BseGI	GGATG	2 cut(s)	85, 135
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMI	GCAATG	1 cut(s)	79
BseNI	ACTGG	2 cut(s)	182, 425
BseSI	GKGCMC	1 cut(s)	8
BsgI	GTGCAG	1 cut(s)	135
BshNI	GGYRCC	1 cut(s)	230
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmAI	GTCTC	1 cut(s)	195
Bso31I	GGTCTC	1 cut(s)	195
Bsp1286I	GDGCHC	2 cut(s)	8, 169
Bsp19I	CCATGG	1 cut(s)	155
BspACI	CCGC	2 cut(s)	255, 275
BspLI	GGNNCC	1 cut(s)	232
BspOI	GCTAGC	1 cut(s)	410
BspT107I	GGYRCC	1 cut(s)	230
BspTNI	GGTCTC	1 cut(s)	195
BsrDI	GCAATG	1 cut(s)	79
BsrI	ACTGG	2 cut(s)	182, 425
BssECI	CCNNGG	3 cut(s)	155, 234, 447
BssT1I	CCWWGG	2 cut(s)	155, 234
Bst2UI	CCWGG	2 cut(s)	48, 206
Bst6I	CTCTTC	1 cut(s)	7
BstAPI	GCANNNNNTGC	1 cut(s)	443
BstC8I	GCNNGC	1 cut(s)	408
BstDSI	CCRYGG	1 cut(s)	155
BstF5I	GGATG	2 cut(s)	85, 135
BstMAI	GTCTC	1 cut(s)	195
BstMWI	GCNNNNNNNGC	1 cut(s)	443
BstNI	CCWGG	2 cut(s)	48, 206
BstSCI	CCNGG	2 cut(s)	46, 204
BstSLI	GKGCMC	1 cut(s)	8
BtgI	CCRYGG	1 cut(s)	155
BtsCI	GGATG	2 cut(s)	85, 135
BtsIMutI	CAGTG	1 cut(s)	189
Cac8I	GCNNGC	1 cut(s)	408
Cfr13I	GGNCC	2 cut(s)	50, 208
CviAII	CATG	1 cut(s)	156
CviJI	RGCY	3 cut(s)	167, 334, 410
CviKI_1	RGCY	3 cut(s)	167, 334, 410
Eam1104I	CTCTTC	1 cut(s)	7
EarI	CTCTTC	1 cut(s)	7
Eco130I	CCWWGG	2 cut(s)	155, 234
Eco24I	GRGCYC	1 cut(s)	169
Eco31I	GGTCTC	1 cut(s)	195
Eco47I	GGWCC	2 cut(s)	50, 208
EcoO109I	RGGNCCY	1 cut(s)	208
EcoRII	CCWGG	2 cut(s)	46, 204
EcoT14I	CCWWGG	2 cut(s)	155, 234
EcoT22I	ATGCAT	1 cut(s)	439
EcoT38I	GRGCYC	1 cut(s)	169
ErhI	CCWWGG	2 cut(s)	155, 234
FaeI	CATG	1 cut(s)	159
FaiI	YATR	6 cut(s)	39, 157, 245, 388, 390, 435
FatI	CATG	1 cut(s)	155
FauI	CCCGC	1 cut(s)	248
FauNDI	CATATG	1 cut(s)	388
Fnu4HI	GCNGC	1 cut(s)	275
FokI	GGATG	2 cut(s)	72, 142
FriOI	GRGCYC	1 cut(s)	169
Fsp4HI	GCNGC	1 cut(s)	275
FspBI	CTAG	4 cut(s)	9, 212, 326, 407
GluI	GCNGC	1 cut(s)	275
Hin1II	CATG	1 cut(s)	159
HinfI	GANTC	1 cut(s)	43
Hpy166II	GTNNAC	2 cut(s)	53, 217
Hpy188I	TCNGA	1 cut(s)	451
Hpy188III	TCNNGA	4 cut(s)	262, 281, 359, 370
Hpy8I	GTNNAC	2 cut(s)	53, 217
HpyCH4V	TGCA	2 cut(s)	152, 437
HpyF10VI	GCNNNNNNNGC	1 cut(s)	443
Hsp92II	CATG	1 cut(s)	159
LweI	GCATC	1 cut(s)	393
MaeI	CTAG	4 cut(s)	9, 212, 326, 407
MboII	GAAGA	3 cut(s)	24, 296, 314
MhlI	GDGCHC	2 cut(s)	8, 169
MluCI	AATT	3 cut(s)	136, 266, 374
MnlI	CCTC	1 cut(s)	457
Mph1103I	ATGCAT	1 cut(s)	439
MspR9I	CCNGG	2 cut(s)	48, 206
MvaI	CCWGG	2 cut(s)	48, 206
MwoI	GCNNNNNNNGC	1 cut(s)	443
NcoI	CCATGG	1 cut(s)	155
NdeI	CATATG	1 cut(s)	388
NheI	GCTAGC	1 cut(s)	406
NlaIII	CATG	1 cut(s)	159
NlaIV	GGNNCC	1 cut(s)	232
NsiI	ATGCAT	1 cut(s)	439
PfeI	GAWTC	1 cut(s)	43
PkrI	GCNGC	1 cut(s)	276
PpuMI	RGGWCCY	1 cut(s)	208
Psp5II	RGGWCCY	1 cut(s)	208
Psp6I	CCWGG	2 cut(s)	46, 204
PspGI	CCWGG	2 cut(s)	46, 204
PspN4I	GGNNCC	1 cut(s)	232
PspPI	GGNCC	2 cut(s)	50, 208
PspPPI	RGGWCCY	1 cut(s)	208
SatI	GCNGC	1 cut(s)	275
Sau96I	GGNCC	2 cut(s)	50, 208
ScrFI	CCNGG	2 cut(s)	48, 206
SduI	GDGCHC	2 cut(s)	8, 169
SetI	ASST	3 cut(s)	213, 232, 412
SfaNI	GCATC	1 cut(s)	393
SinI	GGWCC	2 cut(s)	50, 208
SmlI	CTYRAG	1 cut(s)	168
SmoI	CTYRAG	1 cut(s)	168
Sse9I	AATT	3 cut(s)	136, 266, 374
SsiI	CCGC	2 cut(s)	255, 275
SspMI	CTAG	4 cut(s)	9, 212, 326, 407
StyD4I	CCNGG	2 cut(s)	46, 204
StyI	CCWWGG	2 cut(s)	155, 234
TaqI	TCGA	1 cut(s)	401
TasI	AATT	3 cut(s)	136, 266, 374
TauI	GCSGC	1 cut(s)	277
TfiI	GAWTC	1 cut(s)	43
TscAI	CASTG	1 cut(s)	189
TspDTI	ATGAA	4 cut(s)	146, 232, 354, 355
TspRI	CASTG	1 cut(s)	189
VpaK11BI	GGWCC	2 cut(s)	50, 208
XapI	RAATTY	2 cut(s)	266, 374
XspI	CTAG	4 cut(s)	9, 212, 326, 407
Zsp2I	ATGCAT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.