Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0000795

Physical Location & Seq

Genomic Coordinates Forward (+)

13709659 .. 13709835

Gene Structure 177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1165500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

ATGTTTCGGCCCGACCGGGTCAAAGCCTTGGTCAGCTTGAGTGTGCAGTTCCGGCCGCGAAATCCTCAGAGGAAGTTCATCGAAATGGTTCAAGCTGCTTATGGCGATGACTATTACTTGTGCAGATTTCAGGTTTGGTACTTTTTATGTATTTATTTATTTTTTGGAATTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001676 GO:0002532 GO:0002538 GO:0002539 GO:0003008 GO:0003013 GO:0003674 GO:0003824 GO:0004301 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006954 GO:0007600 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016801 GO:0016803 GO:0019233 GO:0019752 GO:0030258 GO:0032501 GO:0032787 GO:0033559 GO:0042577 GO:0042578 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043651 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045777 GO:0046839 GO:0046872 GO:0050877 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

59

Amino Acids

7.15

Weight (kDa)

9.44

Isoelectric Point (pI)

21.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26740 AT2G26750 AT3G05600 AT3G05600 AT4G15955 AT4G15955
fragaria_vesca	FvH4_2g25390 FvH4_4g18591 FvH4_4g18600 FvH4_4g18600
malus_domestica	MD16G1164900.v1.1 MD16G1165000.v1.1 MD16G1165100.v1.1 MD16G1165300.v1.1 MD16G1165500.v1.1 MD17G1016400.v1.1 MD17G1016500.v1.1
prunus_persica	Prupe.1G124200_v2.0.a1 Prupe.1G124300_v2.0.a1 Prupe.1G124500_v2.0.a1
pyrus_communis	pycom13g14130 pycom16g13960 pycom16g13970 pycom16g13980
rosa_chinensis	RchiOBHm_Chr4g0423281 RchiOBHm_Chr4g0423291 RchiOBHm_Chr4g0423301 RchiOBHm_Chr6g0293571
rosa_laevigata	RLG00000007570 RLG00000007572 RLG00000011940 RLG00000036336
rosa_multiflora	Rmu_co7970336.1_g000001 Rmu_co8074082.1_g000001 Rmu_sc0001290.1_g000009 Rmu_sc0001290.1_g000011 Rmu_sc0002038.1_g000001 Rmu_sc0002038.1_g000010 Rmu_sc0005142.1_g000038 Rmu_sc0006269.1_g000005 Rmu_sc0012160.1_g000002
rosa_roxburghii	Rroxscaffold_5G00365420 Rroxscaffold_5G00365470 Rroxscaffold_5G00365490 Rroxscaffold_7G00174080
rosa_rugosa	Rorug04G0185700 Rorug04G0185800 Rorug04G0185900 Rorug04G0186100 Rorug04G0186200 Rorug06G0236700
rosa_samantha	Rh4AG245400 Rh4AG245500 Rh4AG245600 Rh4BG250700 Rh4BG250900 Rh4BG251000 Rh4CG259000 Rh4CG259200 Rh4CG259400 Rh4DG245400 Rh4DG245600 Rh4DG245700 Rh4DG245800 Rh6CG363400 Rh6DG350300
rosa_wichuraiana	Rw4G021080 Rw4G021090 Rw6G030390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	58
AciI	CCGC	1 cut(s)	56
AcoI	YGGCCR	1 cut(s)	53
AcsI	RAATTY	1 cut(s)	168
AfaI	GTAC	1 cut(s)	140
AgsI	TTSAA	1 cut(s)	92
AluBI	AGCT	2 cut(s)	36, 95
AluI	AGCT	2 cut(s)	36, 95
AoxI	GGCC	2 cut(s)	8, 53
ApeKI	GCWGC	1 cut(s)	95
ApoI	RAATTY	1 cut(s)	168
ArsI	GACNNNNNNTTYG	2 cut(s)	15, 47
Asp700I	GAANNNNTTC	1 cut(s)	87
AspS9I	GGNCC	1 cut(s)	9
AsuC2I	CCSGG	1 cut(s)	17
BbvI	GCAGC	1 cut(s)	82
BcnI	CCSGG	1 cut(s)	17
BisI	GCNGC	2 cut(s)	56, 96
BlsI	GCNGC	2 cut(s)	57, 97
Bme1390I	CCNGG	1 cut(s)	17
BmgT120I	GGNCC	1 cut(s)	9
BmrFI	CCNGG	1 cut(s)	17
BpuEI	CTTGAG	1 cut(s)	58
BpuMI	CCSGG	1 cut(s)	17
BsaJI	CCNNGG	1 cut(s)	27
BseDI	CCNNGG	1 cut(s)	27
BseMII	CTCAG	1 cut(s)	80
BseX3I	CGGCCG	1 cut(s)	53
BseXI	GCAGC	1 cut(s)	82
BsgI	GTGCAG	2 cut(s)	65, 142
Bsh1236I	CGCG	1 cut(s)	58
Bsh1285I	CGRYCG	2 cut(s)	16, 56
BshFI	GGCC	2 cut(s)	10, 55
BsiEI	CGRYCG	2 cut(s)	16, 56
BsiSI	CCGG	2 cut(s)	16, 52
BsnI	GGCC	2 cut(s)	10, 55
BspACI	CCGC	1 cut(s)	56
BspANI	GGCC	2 cut(s)	10, 55
BspCNI	CTCAG	1 cut(s)	79
BspFNI	CGCG	1 cut(s)	58
BssECI	CCNNGG	1 cut(s)	27
BssT1I	CCWWGG	1 cut(s)	27
BstDEI	CTNAG	1 cut(s)	66
BstFNI	CGCG	1 cut(s)	58
BstMCI	CGRYCG	2 cut(s)	16, 56
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BstSCI	CCNGG	1 cut(s)	15
BstUI	CGCG	1 cut(s)	58
BstV1I	GCAGC	1 cut(s)	82
BstZI	CGGCCG	1 cut(s)	53
BsuRI	GGCC	2 cut(s)	10, 55
BtgZI	GCGATG	1 cut(s)	120
Cfr13I	GGNCC	1 cut(s)	9
Csp6I	GTAC	1 cut(s)	139
CviJI	RGCY	5 cut(s)	10, 26, 36, 55, 95
CviKI_1	RGCY	5 cut(s)	10, 26, 36, 55, 95
CviQI	GTAC	1 cut(s)	139
DdeI	CTNAG	1 cut(s)	66
EaeI	YGGCCR	1 cut(s)	53
EagI	CGGCCG	1 cut(s)	53
EclXI	CGGCCG	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	27
Eco52I	CGGCCG	1 cut(s)	53
EcoT14I	CCWWGG	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	27
FaiI	YATR	2 cut(s)	102, 148
Fnu4HI	GCNGC	2 cut(s)	56, 96
Fsp4HI	GCNGC	2 cut(s)	56, 96
GluI	GCNGC	2 cut(s)	56, 96
HaeIII	GGCC	2 cut(s)	10, 55
HapII	CCGG	2 cut(s)	16, 52
HpaII	CCGG	2 cut(s)	16, 52
Hpy188I	TCNGA	1 cut(s)	69
HpyCH4V	TGCA	2 cut(s)	46, 123
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
HpyF3I	CTNAG	1 cut(s)	66
LpnPI	CCDG	3 cut(s)	29, 65, 116
Lsp1109I	GCAGC	1 cut(s)	82
MluCI	AATT	1 cut(s)	168
MnlI	CCTC	2 cut(s)	63, 75
MroXI	GAANNNNTTC	1 cut(s)	87
MslI	CAYNNNNRTG	1 cut(s)	83
MspI	CCGG	2 cut(s)	16, 52
MspR9I	CCNGG	1 cut(s)	17
MvnI	CGCG	1 cut(s)	58
MwoI	GCNNNNNNNGC	1 cut(s)	52
NciI	CCSGG	1 cut(s)	17
PdmI	GAANNNNTTC	1 cut(s)	87
PflFI	GACNNNGTC	1 cut(s)	17
PkrI	GCNGC	2 cut(s)	57, 97
PspPI	GGNCC	1 cut(s)	9
PsyI	GACNNNGTC	1 cut(s)	17
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
RseI	CAYNNNNRTG	1 cut(s)	83
SatI	GCNGC	2 cut(s)	56, 96
Sau96I	GGNCC	1 cut(s)	9
ScrFI	CCNGG	1 cut(s)	17
SetI	ASST	3 cut(s)	38, 97, 135
SmiMI	CAYNNNNRTG	1 cut(s)	83
SmlI	CTYRAG	1 cut(s)	37
SmoI	CTYRAG	1 cut(s)	37
Sse9I	AATT	1 cut(s)	168
SsiI	CCGC	1 cut(s)	56
StyD4I	CCNGG	1 cut(s)	15
StyI	CCWWGG	1 cut(s)	27
TaqI	TCGA	1 cut(s)	81
TasI	AATT	1 cut(s)	168
TauI	GCSGC	1 cut(s)	58
TseI	GCWGC	1 cut(s)	95
TspDTI	ATGAA	1 cut(s)	67
Tth111I	GACNNNGTC	1 cut(s)	17
XapI	RAATTY	1 cut(s)	168
XmnI	GAANNNNTTC	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.