Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000795

Physical Location & Seq

Genomic Coordinates Reverse (-)

32277554 .. 32280583

Gene Structure 3030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0185700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGTTTCATTCACGTGCGATTCGAGTTAGGTGTCAGGGCCTCGCACCGTCTCTACTTTCAAAGAGAGGCATCCTCAGCGTCTCCGAGTTCGTCACCGCCAGTGATAACCTCGTCTCCAAGTGCCTTACCTGGGAATCAAGAAAACCAAGCAAGAGGAAGCCATATCTACCGTCTGAAAACCAGGCTGCATCTGTGGAAGAGGAGTACGAAGTTGGAGATAAAAGTAGTGAGGAGGAAAACTTTCCTTCTATTGAAAATTTAAAAATCAGCAAGGTGAAGTCGGCCCCCTCGCAAGTTAAGGGTGAAGATGAAGATGATATCCCTGACATGGCTGATTATGAAGAAGATGACAACACCTATGGAATACAAAAGAAAAAGAAGGGCTGGTGTTCGTTCATTCTCCATCTGATAGCTGATAGCTTTTCTGATCTCAGGACATTTAAAGCAACAACTGATAGCTTTTCTGATCTCAGCAACAATGTCACCAATTACCACTTGATTCGCGGCGCATCTGATCTCAGGGTCACTCATGCTGACCAGTCAACTTCGATGCAAATGTTGTTGGATTTGACCAAGACAAGGATGTTGCGGTTTTACATGTTGCATCCAAAGACATACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001676 GO:0002532 GO:0002538 GO:0002539 GO:0003008 GO:0003013 GO:0003674 GO:0003824 GO:0004301 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006954 GO:0007600 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016801 GO:0016803 GO:0019233 GO:0019752 GO:0030258 GO:0032501 GO:0032787 GO:0033559 GO:0042577 GO:0042578 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043651 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045777 GO:0046839 GO:0046872 GO:0050877 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

206

Amino Acids

23.44

Weight (kDa)

5.99

Isoelectric Point (pI)

42.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26740 AT2G26750 AT3G05600 AT3G05600 AT4G15955 AT4G15955
fragaria_vesca	FvH4_2g25390 FvH4_4g18591 FvH4_4g18600 FvH4_4g18600
malus_domestica	MD16G1164900.v1.1 MD16G1165000.v1.1 MD16G1165100.v1.1 MD16G1165300.v1.1 MD16G1165500.v1.1 MD17G1016400.v1.1 MD17G1016500.v1.1
prunus_persica	Prupe.1G124200_v2.0.a1 Prupe.1G124300_v2.0.a1 Prupe.1G124500_v2.0.a1
pyrus_communis	pycom13g14130 pycom16g13960 pycom16g13970 pycom16g13980
rosa_chinensis	RchiOBHm_Chr4g0423281 RchiOBHm_Chr4g0423291 RchiOBHm_Chr4g0423301 RchiOBHm_Chr6g0293571
rosa_laevigata	RLG00000007570 RLG00000007572 RLG00000011940 RLG00000036336
rosa_multiflora	Rmu_co7970336.1_g000001 Rmu_co8074082.1_g000001 Rmu_sc0001290.1_g000009 Rmu_sc0001290.1_g000011 Rmu_sc0002038.1_g000001 Rmu_sc0002038.1_g000010 Rmu_sc0005142.1_g000038 Rmu_sc0006269.1_g000005 Rmu_sc0012160.1_g000002
rosa_roxburghii	Rroxscaffold_5G00365420 Rroxscaffold_5G00365470 Rroxscaffold_5G00365490 Rroxscaffold_7G00174080
rosa_rugosa	Rorug04G0185700 Rorug04G0185800 Rorug04G0185900 Rorug04G0186100 Rorug04G0186200 Rorug06G0236700
rosa_samantha	Rh4AG245400 Rh4AG245500 Rh4AG245600 Rh4BG250700 Rh4BG250900 Rh4BG251000 Rh4CG259000 Rh4CG259200 Rh4CG259400 Rh4DG245400 Rh4DG245600 Rh4DG245700 Rh4DG245800 Rh6CG363400 Rh6DG350300
rosa_wichuraiana	Rw4G021080 Rw4G021090 Rw6G030390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	504
AciI	CCGC	3 cut(s)	96, 504, 589
AcsI	RAATTY	1 cut(s)	256
AcvI	CACGTG	1 cut(s)	14
AfaI	GTAC	1 cut(s)	206
AfiI	CCNNNNNNNGG	3 cut(s)	130, 328, 579
AflIII	ACRYGT	1 cut(s)	597
AgsI	TTSAA	2 cut(s)	60, 254
AjnI	CCWGG	2 cut(s)	128, 180
AluBI	AGCT	3 cut(s)	413, 420, 459
AluI	AGCT	3 cut(s)	413, 420, 459
Alw26I	GTCTC	3 cut(s)	54, 85, 118
AoxI	GGCC	2 cut(s)	37, 282
ApeKI	GCWGC	1 cut(s)	185
ApoI	RAATTY	1 cut(s)	256
Asp700I	GAANNNNTTC	1 cut(s)	240
AspLEI	GCGC	1 cut(s)	509
AspS9I	GGNCC	2 cut(s)	37, 283
AsuHPI	GGTGA	4 cut(s)	85, 286, 314, 475
BbrPI	CACGTG	1 cut(s)	14
BbvCI	CCTCAGC	1 cut(s)	74
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	1 cut(s)	411
BciT130I	CCWGG	2 cut(s)	130, 182
BcoDI	GTCTC	3 cut(s)	54, 85, 118
BisI	GCNGC	2 cut(s)	186, 505
BlsI	GCNGC	2 cut(s)	187, 506
Bme1390I	CCNGG	2 cut(s)	130, 182
BmgT120I	GGNCC	2 cut(s)	37, 283
BmiI	GGNNCC	1 cut(s)	285
BmrFI	CCNGG	2 cut(s)	130, 182
BmsI	GCATC	5 cut(s)	78, 197, 518, 540, 613
BplI	GAGNNNNNCTC	2 cut(s)	57, 89
Bpu10I	CCTNAGC	1 cut(s)	74
BsaAI	YACGTR	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	129
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	3 cut(s)	130, 328, 579
Bse1I	ACTGG	2 cut(s)	99, 538
BseBI	CCWGG	2 cut(s)	130, 182
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	3 cut(s)	69, 588, 604
BseLI	CCNNNNNNNGG	3 cut(s)	130, 328, 579
BseMII	CTCAG	4 cut(s)	88, 445, 484, 532
BseNI	ACTGG	2 cut(s)	99, 538
BseRI	GAGGAG	2 cut(s)	215, 245
BseXI	GCAGC	1 cut(s)	172
Bsh1236I	CGCG	1 cut(s)	504
BshFI	GGCC	2 cut(s)	39, 284
BslI	CCNNNNNNNGG	3 cut(s)	130, 328, 579
BsmAI	GTCTC	3 cut(s)	54, 85, 118
BsmBI	CGTCTC	3 cut(s)	54, 85, 118
BsnI	GGCC	2 cut(s)	39, 284
Bsp143I	GATC	3 cut(s)	427, 466, 514
BspACI	CCGC	3 cut(s)	96, 504, 589
BspANI	GGCC	2 cut(s)	39, 284
BspCNI	CTCAG	4 cut(s)	87, 444, 483, 531
BspFNI	CGCG	1 cut(s)	504
BspLI	GGNNCC	1 cut(s)	285
BsrI	ACTGG	2 cut(s)	99, 538
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	3 cut(s)	427, 466, 514
Bst2UI	CCWGG	2 cut(s)	130, 182
Bst4CI	ACNGT	2 cut(s)	48, 171
Bst6I	CTCTTC	1 cut(s)	192
BstBAI	YACGTR	1 cut(s)	14
BstDEI	CTNAG	4 cut(s)	74, 431, 470, 518
BstF5I	GGATG	3 cut(s)	69, 588, 604
BstFNI	CGCG	1 cut(s)	504
BstHHI	GCGC	1 cut(s)	509
BstKTI	GATC	3 cut(s)	430, 469, 517
BstMAI	GTCTC	3 cut(s)	54, 85, 118
BstMBI	GATC	3 cut(s)	427, 466, 514
BstMWI	GCNNNNNNNGC	1 cut(s)	75
BstNI	CCWGG	2 cut(s)	130, 182
BstNSI	RCATGY	1 cut(s)	601
BstSCI	CCNGG	2 cut(s)	128, 180
BstUI	CGCG	1 cut(s)	504
BstV1I	GCAGC	1 cut(s)	172
BsuRI	GGCC	2 cut(s)	39, 284
BtsCI	GGATG	3 cut(s)	69, 588, 604
BtsIMutI	CAGTG	1 cut(s)	106
CfoI	GCGC	1 cut(s)	509
Cfr13I	GGNCC	2 cut(s)	37, 283
CseI	GACGC	1 cut(s)	67
Csp6I	GTAC	1 cut(s)	205
CviAII	CATG	3 cut(s)	328, 530, 598
CviJI	RGCY	9 cut(s)	39, 160, 185, 284, 332, 384, 413, 420, 459
CviKI_1	RGCY	9 cut(s)	39, 160, 185, 284, 332, 384, 413, 420, 459
CviQI	GTAC	1 cut(s)	205
DdeI	CTNAG	4 cut(s)	74, 431, 470, 518
DpnI	GATC	3 cut(s)	429, 468, 516
DpnII	GATC	3 cut(s)	427, 466, 514
DraI	TTTAAA	2 cut(s)	261, 442
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
Eco32I	GATATC	1 cut(s)	319
Eco72I	CACGTG	1 cut(s)	14
EcoO109I	RGGNCCY	1 cut(s)	37
EcoRII	CCWGG	2 cut(s)	128, 180
EcoRV	GATATC	1 cut(s)	319
Esp3I	CGTCTC	3 cut(s)	54, 85, 118
FaeI	CATG	3 cut(s)	331, 533, 601
FaiI	YATR	7 cut(s)	163, 329, 339, 360, 531, 599, 616
FatI	CATG	3 cut(s)	327, 529, 597
Fnu4HI	GCNGC	2 cut(s)	186, 505
FokI	GGATG	3 cut(s)	56, 591, 595
Fsp4HI	GCNGC	2 cut(s)	186, 505
GlaI	GCGC	1 cut(s)	508
GluI	GCNGC	2 cut(s)	186, 505
HaeIII	GGCC	2 cut(s)	39, 284
HgaI	GACGC	1 cut(s)	67
HhaI	GCGC	1 cut(s)	509
Hin1II	CATG	3 cut(s)	331, 533, 601
Hin6I	GCGC	1 cut(s)	507
HinP1I	GCGC	1 cut(s)	507
HincII	GTYRAC	1 cut(s)	543
HindII	GTYRAC	1 cut(s)	543
HinfI	GANTC	3 cut(s)	19, 134, 499
HphI	GGTGA	4 cut(s)	85, 286, 314, 475
Hpy166II	GTNNAC	1 cut(s)	543
Hpy188I	TCNGA	6 cut(s)	85, 175, 408, 427, 466, 514
Hpy188III	TCNNGA	2 cut(s)	138, 433
Hpy8I	GTNNAC	1 cut(s)	543
HpyAV	CCTTC	2 cut(s)	255, 373
HpyCH4III	ACNGT	2 cut(s)	48, 171
HpyCH4IV	ACGT	1 cut(s)	13
HpyCH4V	TGCA	3 cut(s)	188, 553, 604
HpyF10VI	GCNNNNNNNGC	1 cut(s)	75
HpyF3I	CTNAG	4 cut(s)	74, 431, 470, 518
HpySE526I	ACGT	1 cut(s)	13
Hsp92II	CATG	3 cut(s)	331, 533, 601
HspAI	GCGC	1 cut(s)	507
Kzo9I	GATC	3 cut(s)	427, 466, 514
Lsp1109I	GCAGC	1 cut(s)	172
LweI	GCATC	5 cut(s)	78, 197, 518, 540, 613
MaeII	ACGT	1 cut(s)	13
MaeIII	GTNAC	3 cut(s)	91, 481, 523
MalI	GATC	3 cut(s)	429, 468, 516
MboI	GATC	3 cut(s)	427, 466, 514
MboII	GAAGA	5 cut(s)	209, 317, 323, 353, 356
MluCI	AATT	2 cut(s)	256, 487
MmeI	TCCRAC	2 cut(s)	193, 543
MnlI	CCTC	9 cut(s)	50, 59, 83, 119, 147, 193, 223, 226, 298
MroXI	GAANNNNTTC	1 cut(s)	240
MseI	TTAA	3 cut(s)	260, 297, 441
MslI	CAYNNNNRTG	1 cut(s)	12
MspR9I	CCNGG	2 cut(s)	130, 182
MvaI	CCWGG	2 cut(s)	130, 182
MvnI	CGCG	1 cut(s)	504
MwoI	GCNNNNNNNGC	1 cut(s)	75
NdeII	GATC	3 cut(s)	427, 466, 514
NlaIII	CATG	3 cut(s)	331, 533, 601
NlaIV	GGNNCC	1 cut(s)	285
NmuCI	GTSAC	3 cut(s)	91, 481, 523
NspI	RCATGY	1 cut(s)	601
PciI	ACATGT	1 cut(s)	597
PcsI	WCGNNNNNNNCGW	1 cut(s)	19
PdmI	GAANNNNTTC	1 cut(s)	240
PfeI	GAWTC	3 cut(s)	19, 134, 499
PkrI	GCNGC	2 cut(s)	187, 506
PmaCI	CACGTG	1 cut(s)	14
PmlI	CACGTG	1 cut(s)	14
Ppu21I	YACGTR	1 cut(s)	14
PscI	ACATGT	1 cut(s)	597
Psp6I	CCWGG	2 cut(s)	128, 180
PspCI	CACGTG	1 cut(s)	14
PspGI	CCWGG	2 cut(s)	128, 180
PspN4I	GGNNCC	1 cut(s)	285
PspPI	GGNCC	2 cut(s)	37, 283
RsaI	GTAC	1 cut(s)	206
RsaNI	GTAC	1 cut(s)	205
RseI	CAYNNNNRTG	1 cut(s)	12
SaqAI	TTAA	3 cut(s)	260, 297, 441
SatI	GCNGC	2 cut(s)	186, 505
Sau3AI	GATC	3 cut(s)	427, 466, 514
Sau96I	GGNCC	2 cut(s)	37, 283
ScrFI	CCNGG	2 cut(s)	130, 182
SetI	ASST	9 cut(s)	16, 32, 111, 131, 276, 359, 415, 422, 461
SfaNI	GCATC	5 cut(s)	78, 197, 518, 540, 613
SmiMI	CAYNNNNRTG	1 cut(s)	12
Sse9I	AATT	2 cut(s)	256, 487
SsiI	CCGC	3 cut(s)	96, 504, 589
StyD4I	CCNGG	2 cut(s)	128, 180
TaaI	ACNGT	2 cut(s)	48, 171
TaiI	ACGT	1 cut(s)	16
TaqI	TCGA	2 cut(s)	22, 548
TasI	AATT	2 cut(s)	256, 487
TauI	GCSGC	1 cut(s)	507
TfiI	GAWTC	3 cut(s)	19, 134, 499
Tru1I	TTAA	3 cut(s)	260, 297, 441
Tru9I	TTAA	3 cut(s)	260, 297, 441
TscAI	CASTG	1 cut(s)	106
TseFI	GTSAC	3 cut(s)	91, 481, 523
TseI	GCWGC	1 cut(s)	185
Tsp45I	GTSAC	3 cut(s)	91, 481, 523
TspDTI	ATGAA	3 cut(s)	324, 354, 385
TspRI	CASTG	1 cut(s)	106
XapI	RAATTY	1 cut(s)	256
XceI	RCATGY	1 cut(s)	601
XmnI	GAANNNNTTC	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.