Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8074082.1

Orthogroup ID

OG0000795

Physical Location & Seq

Genomic Coordinates Reverse (-)

99 .. 530

Gene Structure 432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8074082.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atgcacgtagccgagaaaggccaaggcccggtggtcctattcctccatggcttcccggagctctggtactcatggaggcaccaaatccagaccctggcctcgctcggctaccgagccgttgcgccggacctccgcggcttcggtgacaccgacgcgccggccgactcgtcgagctacacttgcttccacgtggtgggagatctcgtggcgctattggacgctgtcgccggcgaccaggagaaggtgttcgtggtcgggcacgactggggggcaatcatggcttggtatctctgcctgtttcggccggaccgagtcaaggctctggtcaacttgagcgtgcatttctttcctagaaatcctcagatgaagtttgttgaatcaatgaaagctgcttatggggacgactattatatttgcagatttcaggtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001676 GO:0002532 GO:0002538 GO:0002539 GO:0003008 GO:0003013 GO:0003674 GO:0003824 GO:0004301 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006954 GO:0007600 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016801 GO:0016803 GO:0019233 GO:0019752 GO:0030258 GO:0032501 GO:0032787 GO:0033559 GO:0042577 GO:0042578 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043651 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045777 GO:0046839 GO:0046872 GO:0050877 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

143

Amino Acids

16.16

Weight (kDa)

6.02

Isoelectric Point (pI)

27.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26740 AT2G26750 AT3G05600 AT3G05600 AT4G15955 AT4G15955
fragaria_vesca	FvH4_2g25390 FvH4_4g18591 FvH4_4g18600 FvH4_4g18600
malus_domestica	MD16G1164900.v1.1 MD16G1165000.v1.1 MD16G1165100.v1.1 MD16G1165300.v1.1 MD16G1165500.v1.1 MD17G1016400.v1.1 MD17G1016500.v1.1
prunus_persica	Prupe.1G124200_v2.0.a1 Prupe.1G124300_v2.0.a1 Prupe.1G124500_v2.0.a1
pyrus_communis	pycom13g14130 pycom16g13960 pycom16g13970 pycom16g13980
rosa_chinensis	RchiOBHm_Chr4g0423281 RchiOBHm_Chr4g0423291 RchiOBHm_Chr4g0423301 RchiOBHm_Chr6g0293571
rosa_laevigata	RLG00000007570 RLG00000007572 RLG00000011940 RLG00000036336
rosa_multiflora	Rmu_co7970336.1_g000001 Rmu_co8074082.1_g000001 Rmu_sc0001290.1_g000009 Rmu_sc0001290.1_g000011 Rmu_sc0002038.1_g000001 Rmu_sc0002038.1_g000010 Rmu_sc0005142.1_g000038 Rmu_sc0006269.1_g000005 Rmu_sc0012160.1_g000002
rosa_roxburghii	Rroxscaffold_5G00365420 Rroxscaffold_5G00365470 Rroxscaffold_5G00365490 Rroxscaffold_7G00174080
rosa_rugosa	Rorug04G0185700 Rorug04G0185800 Rorug04G0185900 Rorug04G0186100 Rorug04G0186200 Rorug06G0236700
rosa_samantha	Rh4AG245400 Rh4AG245500 Rh4AG245600 Rh4BG250700 Rh4BG250900 Rh4BG251000 Rh4CG259000 Rh4CG259200 Rh4CG259400 Rh4DG245400 Rh4DG245600 Rh4DG245700 Rh4DG245800 Rh6CG363400 Rh6DG350300
rosa_wichuraiana	Rw4G021080 Rw4G021090 Rw6G030390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	78
AccB7I	CCANNNNNTGG	2 cut(s)	94, 193
AccII	CGCG	2 cut(s)	135, 155
AciI	CCGC	2 cut(s)	133, 135
AcoI	YGGCCR	2 cut(s)	159, 302
AcvI	CACGTG	1 cut(s)	190
AdeI	CACNNNGTG	1 cut(s)	193
AfaI	GTAC	1 cut(s)	68
AfiI	CCNNNNNNNGG	5 cut(s)	28, 94, 193, 241, 316
AgsI	TTSAA	1 cut(s)	377
AjnI	CCWGG	2 cut(s)	93, 234
AloI	GAACNNNNNNTCC	2 cut(s)	230, 262
AluBI	AGCT	3 cut(s)	61, 174, 389
AluI	AGCT	3 cut(s)	61, 174, 389
Alw21I	GWGCWC	1 cut(s)	63
AlwNI	CAGNNNCTG	1 cut(s)	94
AoxI	GGCC	5 cut(s)	19, 25, 96, 159, 302
ApeKI	GCWGC	1 cut(s)	389
Asp700I	GAANNNNTTC	1 cut(s)	245
AspLEI	GCGC	3 cut(s)	124, 157, 211
AspS9I	GGNCC	4 cut(s)	26, 34, 127, 307
AsuC2I	CCSGG	2 cut(s)	29, 56
AsuHPI	GGTGA	1 cut(s)	155
AvaII	GGWCC	3 cut(s)	34, 127, 307
BaeGI	GKGCMC	1 cut(s)	261
BanI	GGYRCC	1 cut(s)	78
BanII	GRGCYC	1 cut(s)	63
BauI	CACGAG	1 cut(s)	203
BbrPI	CACGTG	1 cut(s)	190
Bbv12I	GWGCWC	1 cut(s)	63
BbvI	GCAGC	1 cut(s)	376
BceAI	ACGGC	1 cut(s)	101
BciT130I	CCWGG	2 cut(s)	95, 236
BcnI	CCSGG	2 cut(s)	29, 56
BfaI	CTAG	1 cut(s)	351
BfoI	RGCGCY	1 cut(s)	212
BglII	AGATCT	1 cut(s)	199
BisI	GCNGC	2 cut(s)	136, 390
BlsI	GCNGC	2 cut(s)	137, 391
Bme1390I	CCNGG	4 cut(s)	29, 56, 95, 236
Bme18I	GGWCC	3 cut(s)	34, 127, 307
BmgT120I	GGNCC	4 cut(s)	26, 34, 127, 307
BmiI	GGNNCC	1 cut(s)	80
BmrFI	CCNGG	4 cut(s)	29, 56, 95, 236
BmrI	ACTGGG	1 cut(s)	274
BmuI	ACTGGG	1 cut(s)	274
BpuEI	CTTGAG	1 cut(s)	352
BpuMI	CCSGG	2 cut(s)	29, 56
BsaAI	YACGTR	2 cut(s)	7, 190
BsaJI	CCNNGG	4 cut(s)	22, 46, 93, 133
BsaXI	ACNNNNNCTCC	6 cut(s)	50, 80, 189, 219, 230, 260
Bsc4I	CCNNNNNNNGG	5 cut(s)	28, 94, 193, 241, 316
Bse118I	RCCGGY	2 cut(s)	157, 227
Bse1I	ACTGG	1 cut(s)	269
BseBI	CCWGG	2 cut(s)	95, 236
BseDI	CCNNGG	4 cut(s)	22, 46, 93, 133
BseLI	CCNNNNNNNGG	5 cut(s)	28, 94, 193, 241, 316
BseMII	CTCAG	1 cut(s)	374
BseNI	ACTGG	1 cut(s)	269
BseSI	GKGCMC	1 cut(s)	261
BseX3I	CGGCCG	2 cut(s)	159, 302
BseXI	GCAGC	1 cut(s)	376
Bsh1236I	CGCG	2 cut(s)	135, 155
Bsh1285I	CGRYCG	2 cut(s)	162, 305
BshFI	GGCC	5 cut(s)	21, 27, 98, 161, 304
BshNI	GGYRCC	1 cut(s)	78
BsiEI	CGRYCG	2 cut(s)	162, 305
BsiHKAI	GWGCWC	1 cut(s)	63
BsiSI	CCGG	6 cut(s)	29, 56, 125, 158, 228, 305
BslFI	GGGAC	1 cut(s)	413
BslI	CCNNNNNNNGG	5 cut(s)	28, 94, 193, 241, 316
BsmFI	GGGAC	1 cut(s)	413
BsnI	GGCC	5 cut(s)	21, 27, 98, 161, 304
Bsp1286I	GDGCHC	2 cut(s)	63, 261
Bsp143I	GATC	1 cut(s)	199
Bsp19I	CCATGG	1 cut(s)	46
BspACI	CCGC	2 cut(s)	133, 135
BspANI	GGCC	5 cut(s)	21, 27, 98, 161, 304
BspCNI	CTCAG	1 cut(s)	373
BspFNI	CGCG	2 cut(s)	135, 155
BspLI	GGNNCC	1 cut(s)	80
BspT107I	GGYRCC	1 cut(s)	78
BsrFI	RCCGGY	2 cut(s)	157, 227
BsrI	ACTGG	1 cut(s)	269
BssAI	RCCGGY	2 cut(s)	157, 227
BssECI	CCNNGG	4 cut(s)	22, 46, 93, 133
BssMI	GATC	1 cut(s)	199
BssSI	CACGAG	1 cut(s)	203
BssT1I	CCWWGG	2 cut(s)	22, 46
Bst2BI	CACGAG	1 cut(s)	203
Bst2UI	CCWGG	2 cut(s)	95, 236
BstBAI	YACGTR	2 cut(s)	7, 190
BstC8I	GCNNGC	3 cut(s)	159, 229, 338
BstDEI	CTNAG	1 cut(s)	360
BstDSI	CCRYGG	2 cut(s)	46, 133
BstFNI	CGCG	2 cut(s)	135, 155
BstH2I	RGCGCY	1 cut(s)	212
BstHHI	GCGC	3 cut(s)	124, 157, 211
BstKTI	GATC	1 cut(s)	202
BstMBI	GATC	1 cut(s)	199
BstMCI	CGRYCG	2 cut(s)	162, 305
BstMWI	GCNNNNNNNGC	2 cut(s)	180, 278
BstNI	CCWGG	2 cut(s)	95, 236
BstSCI	CCNGG	4 cut(s)	27, 54, 93, 234
BstSLI	GKGCMC	1 cut(s)	261
BstUI	CGCG	2 cut(s)	135, 155
BstV1I	GCAGC	1 cut(s)	376
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
BstZI	CGGCCG	2 cut(s)	159, 302
BsuRI	GGCC	5 cut(s)	21, 27, 98, 161, 304
BtgI	CCRYGG	2 cut(s)	46, 133
Cac8I	GCNNGC	3 cut(s)	159, 229, 338
CaiI	CAGNNNCTG	1 cut(s)	94
CfoI	GCGC	3 cut(s)	124, 157, 211
Cfr10I	RCCGGY	2 cut(s)	157, 227
Cfr13I	GGNCC	4 cut(s)	26, 34, 127, 307
Cfr42I	CCGCGG	1 cut(s)	136
CpoI	CGGWCCG	1 cut(s)	307
CseI	GACGC	2 cut(s)	161, 227
Csp6I	GTAC	1 cut(s)	67
CspI	CGGWCCG	1 cut(s)	307
CviAII	CATG	3 cut(s)	47, 72, 277
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	1 cut(s)	360
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
DraIII	CACNNNGTG	1 cut(s)	193
EaeI	YGGCCR	2 cut(s)	159, 302
EagI	CGGCCG	2 cut(s)	159, 302
Ecl136II	GAGCTC	1 cut(s)	61
EclXI	CGGCCG	2 cut(s)	159, 302
Eco130I	CCWWGG	2 cut(s)	22, 46
Eco24I	GRGCYC	1 cut(s)	63
Eco47I	GGWCC	3 cut(s)	34, 127, 307
Eco52I	CGGCCG	2 cut(s)	159, 302
Eco53kI	GAGCTC	1 cut(s)	61
Eco72I	CACGTG	1 cut(s)	190
EcoICRI	GAGCTC	1 cut(s)	61
EcoRII	CCWGG	2 cut(s)	93, 234
EcoT14I	CCWWGG	2 cut(s)	22, 46
EcoT38I	GRGCYC	1 cut(s)	63
ErhI	CCWWGG	2 cut(s)	22, 46
FaeI	CATG	3 cut(s)	50, 75, 280
FaiI	YATR	5 cut(s)	48, 73, 278, 396, 411
FaqI	GGGAC	1 cut(s)	413
FatI	CATG	3 cut(s)	46, 71, 276
Fnu4HI	GCNGC	2 cut(s)	136, 390
FriOI	GRGCYC	1 cut(s)	63
Fsp4HI	GCNGC	2 cut(s)	136, 390
FspBI	CTAG	1 cut(s)	351
GlaI	GCGC	3 cut(s)	123, 156, 210
GluI	GCNGC	2 cut(s)	136, 390
HaeII	RGCGCY	1 cut(s)	212
HaeIII	GGCC	5 cut(s)	21, 27, 98, 161, 304
HapII	CCGG	6 cut(s)	29, 56, 125, 158, 228, 305
HgaI	GACGC	2 cut(s)	161, 227
HhaI	GCGC	3 cut(s)	124, 157, 211
Hin1II	CATG	3 cut(s)	50, 75, 280
Hin6I	GCGC	3 cut(s)	122, 155, 209
HinP1I	GCGC	3 cut(s)	122, 155, 209
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HinfI	GANTC	3 cut(s)	164, 312, 377
HpaII	CCGG	6 cut(s)	29, 56, 125, 158, 228, 305
HphI	GGTGA	1 cut(s)	155
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188I	TCNGA	1 cut(s)	363
Hpy188III	TCNNGA	1 cut(s)	88
Hpy8I	GTNNAC	1 cut(s)	328
Hpy99I	CGWCG	2 cut(s)	155, 172
HpyAV	CCTTC	1 cut(s)	235
HpyCH4IV	ACGT	2 cut(s)	6, 189
HpyCH4V	TGCA	3 cut(s)	4, 340, 417
HpyF10VI	GCNNNNNNNGC	2 cut(s)	180, 278
HpyF3I	CTNAG	1 cut(s)	360
HpySE526I	ACGT	2 cut(s)	6, 189
Hsp92II	CATG	3 cut(s)	50, 75, 280
HspAI	GCGC	3 cut(s)	122, 155, 209
KroI	GCCGGC	2 cut(s)	157, 227
KroNI	GCCGGC	2 cut(s)	159, 229
KspI	CCGCGG	1 cut(s)	136
Kzo9I	GATC	1 cut(s)	199
LmnI	GCTCC	1 cut(s)	58
Lsp1109I	GCAGC	1 cut(s)	376
MaeI	CTAG	1 cut(s)	351
MaeII	ACGT	2 cut(s)	6, 189
MaeIII	GTNAC	1 cut(s)	143
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MflI	RGATCY	1 cut(s)	199
MhlI	GDGCHC	2 cut(s)	63, 261
MlyI	GAGTC	2 cut(s)	158, 321
MnlI	CCTC	5 cut(s)	53, 69, 109, 140, 369
MreI	CGCCGGCG	1 cut(s)	227
MroNI	GCCGGC	2 cut(s)	157, 227
MroXI	GAANNNNTTC	1 cut(s)	245
MspA1I	CMGCKG	1 cut(s)	135
MspI	CCGG	6 cut(s)	29, 56, 125, 158, 228, 305
MspR9I	CCNGG	4 cut(s)	29, 56, 95, 236
MvaI	CCWGG	2 cut(s)	95, 236
MvnI	CGCG	2 cut(s)	135, 155
MwoI	GCNNNNNNNGC	2 cut(s)	180, 278
NaeI	GCCGGC	2 cut(s)	159, 229
NciI	CCSGG	2 cut(s)	29, 56
NcoI	CCATGG	1 cut(s)	46
NdeII	GATC	1 cut(s)	199
NgoMIV	GCCGGC	2 cut(s)	157, 227
NlaIII	CATG	3 cut(s)	50, 75, 280
NlaIV	GGNNCC	1 cut(s)	80
NmeAIII	GCCGAG	2 cut(s)	37, 84
NmuCI	GTSAC	1 cut(s)	143
PcsI	WCGNNNNNNNCGW	3 cut(s)	147, 159, 307
PdiI	GCCGGC	2 cut(s)	159, 229
PdmI	GAANNNNTTC	1 cut(s)	245
PfeI	GAWTC	1 cut(s)	377
PflFI	GACNNNGTC	2 cut(s)	221, 311
PflMI	CCANNNNNTGG	2 cut(s)	94, 193
PfoI	TCCNGGA	1 cut(s)	54
PkrI	GCNGC	2 cut(s)	137, 391
PleI	GAGTC	2 cut(s)	158, 320
PmaCI	CACGTG	1 cut(s)	190
PmlI	CACGTG	1 cut(s)	190
PpsI	GAGTC	2 cut(s)	158, 320
Ppu21I	YACGTR	2 cut(s)	7, 190
Psp124BI	GAGCTC	1 cut(s)	63
Psp6I	CCWGG	2 cut(s)	93, 234
PspCI	CACGTG	1 cut(s)	190
PspGI	CCWGG	2 cut(s)	93, 234
PspN4I	GGNNCC	1 cut(s)	80
PspPI	GGNCC	4 cut(s)	26, 34, 127, 307
PstNI	CAGNNNCTG	1 cut(s)	94
PsuI	RGATCY	1 cut(s)	199
PsyI	GACNNNGTC	2 cut(s)	221, 311
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
Rsr2I	CGGWCCG	1 cut(s)	307
RsrII	CGGWCCG	1 cut(s)	307
SacI	GAGCTC	1 cut(s)	63
SacII	CCGCGG	1 cut(s)	136
SatI	GCNGC	2 cut(s)	136, 390
Sau3AI	GATC	1 cut(s)	199
Sau96I	GGNCC	4 cut(s)	26, 34, 127, 307
SchI	GAGTC	2 cut(s)	158, 321
ScrFI	CCNGG	4 cut(s)	29, 56, 95, 236
SduI	GDGCHC	2 cut(s)	63, 261
SetI	ASST	8 cut(s)	9, 63, 132, 176, 192, 246, 391, 429
Sfr303I	CCGCGG	1 cut(s)	136
SgrAI	CRCCGGYG	1 cut(s)	227
SgrBI	CCGCGG	1 cut(s)	136
SinI	GGWCC	3 cut(s)	34, 127, 307
SmlI	CTYRAG	1 cut(s)	331
SmoI	CTYRAG	1 cut(s)	331
SsiI	CCGC	2 cut(s)	133, 135
SspMI	CTAG	1 cut(s)	351
SstI	GAGCTC	1 cut(s)	63
StyD4I	CCNGG	4 cut(s)	27, 54, 93, 234
StyI	CCWWGG	2 cut(s)	22, 46
TaiI	ACGT	2 cut(s)	9, 192
TaqI	TCGA	1 cut(s)	170
TaqII	GACCGA	1 cut(s)	324
TauI	GCSGC	1 cut(s)	138
TfiI	GAWTC	1 cut(s)	377
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	1 cut(s)	389
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	2 cut(s)	380, 398
Tth111I	GACNNNGTC	2 cut(s)	221, 311
Van91I	CCANNNNNTGG	2 cut(s)	94, 193
VpaK11BI	GGWCC	3 cut(s)	34, 127, 307
XmnI	GAANNNNTTC	1 cut(s)	245
XspI	CTAG	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.