Rw4G021080

Bifunctional epoxide hydrolase 2-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
45531113 .. 45533875
2763 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G021080.1

Sequence Viewer

Length: 960 bp
ATGGAGGGAATAGAGCACAGGATGGTCAAAGTCAACGGGATCAACATGCACGTAGCTGAGAAAGGTCAAGGCCCGGTGATCCTCTTCATCCACGGCTTCCCGGAGCTGTGGTACACCTGGAGACACCAAATCCAGGCCTTCGCCTCGCTCGGCTACCGAGCCGTGGCGCCGGACCTCCGCGGCTACGGCGACACAGACGCGCCCGCCGACCCGTCTAGCTACACGTACTTCCACGTGGTGGGCGATCTGGTGGCGCTGTTGGACGCCGTAGCCGCGGATCAGGAGAAGGTGTTCGTGGTCGGGCACAACTGGGGTGCGCTCATCGCTTGGTATTTTTGCCTGTTTCGGCCAGACCGGGTTAAGGCTCTGGTCAACATGAGCGTGGCGTTCACTCCTAGAAATCCTCAGAGGAAGACTGTTGAAACCTTGAGAGCTGTTTATGGGGATGACTATTACATGTGCAGATTTCAGGAACCAGGAGAGATTGAAGCCGAGTTTGCCCAGATTGGTGCTACAAGAGTTATGAAGGAACTCCTAACATATCGCCATCCTGGTCCAGTTTTCCTGCCTAAAGGTAAAGGTTTTGGACATTCCCCAGATGCTCCAATTCCCTTGCCAAGTTGGTTGTCTGAGGATGATTTTAACTACTATGCCAGCTTCTTCGAGAAGAAGGGCTTCACTGGTGGCATAAACTACTATCGAAACTTGGACCGAAACTGGGAACTGACTGCACCCTGGACTGGGGCTCAAATAAAAGTTCCAGTTAAGTTCATTGTGGGAGACCAAGACCTAGTTTATAATTCAGTAGGCGGCAAGGATTTCATACACAAAGGTGGTTTGAAGAAGTATGTGCCGTTTCTGCAAGAGGTAGTCGTAATGGAAGGAGTTGCCCATTTTATCAACGAAGAAAGGCCCACTGAAATTAGTGAACACATCCATGACTTTATCAAGAAATTCTAG

Protein Analysis

319

Amino Acids

36.28

Weight (kDa)

6.18

Isoelectric Point (pI)

34.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chlorophyllase PF07224 19 - 114 1.2e-06 Chlorophyllase
Abhydrolase_1 PF00561 25 - 135 5.7e-24 alpha/beta hydrolase fold
Hydrolase_4 PF12146 26 - 144 4.6e-14 Serine aminopeptidase, S33
Abhydrolase_6 PF12697 27 - 308 6.3e-18 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 798
AccB1I GGYRCC 1 cut(s) 166
AccB7I CCANNNNNTGG 1 cut(s) 238
AccII CGCG 3 cut(s) 180, 200, 275
AciI CCGC 6 cut(s) 178, 180, 204, 273, 275, 810
AclWI GGATC 3 cut(s) 47, 73, 285
AcoI YGGCCR 1 cut(s) 347
AcsI RAATTY 1 cut(s) 953
AcvI CACGTG 1 cut(s) 235
AcyI GRCGYC 2 cut(s) 167, 264
AdeI CACNNNGTG 1 cut(s) 238
AfaI GTAC 2 cut(s) 113, 227
AfiI CCNNNNNNNGG 7 cut(s) 133, 163, 238, 361, 718, 740, 741
AflIII ACRYGT 2 cut(s) 222, 456
AgsI TTSAA 3 cut(s) 422, 488, 841
AjnI CCWGG 5 cut(s) 116, 132, 475, 550, 734
AleI CACNNNNGTG 1 cut(s) 831
AloI GAACNNNNNNTCC 2 cut(s) 275, 307
AluBI AGCT 5 cut(s) 56, 106, 219, 434, 657
AluI AGCT 5 cut(s) 56, 106, 219, 434, 657
Alw21I GWGCWC 1 cut(s) 18
Alw26I GTCTC 2 cut(s) 115, 774
AlwI GGATC 3 cut(s) 47, 73, 285
AoxI GGCC 4 cut(s) 70, 135, 347, 911
ApoI RAATTY 1 cut(s) 953
Asp700I GAANNNNTTC 2 cut(s) 290, 674
AspLEI GCGC 4 cut(s) 169, 202, 256, 319
AspS9I GGNCC 5 cut(s) 71, 172, 554, 709, 912
AsuC2I CCSGG 3 cut(s) 74, 101, 356
AsuHPI GGTGA 1 cut(s) 88
AvaII GGWCC 3 cut(s) 172, 554, 709
BaeGI GKGCMC 1 cut(s) 306
BanI GGYRCC 1 cut(s) 166
BanII GRGCYC 1 cut(s) 748
BbrPI CACGTG 1 cut(s) 235
BbsI GAAGAC 1 cut(s) 419
Bbv12I GWGCWC 1 cut(s) 18
BccI CCATC 2 cut(s) 16, 555
BceAI ACGGC 5 cut(s) 109, 146, 202, 251, 838
BciT130I CCWGG 5 cut(s) 118, 134, 477, 552, 736
BcnI CCSGG 3 cut(s) 74, 101, 356
BcoDI GTCTC 2 cut(s) 115, 774
BfaI CTAG 4 cut(s) 216, 396, 791, 958
BfoI RGCGCY 2 cut(s) 170, 257
BisI GCNGC 3 cut(s) 181, 273, 811
BlsI GCNGC 3 cut(s) 182, 274, 812
Bme1390I CCNGG 8 cut(s) 74, 101, 118, 134, 356, 477, 552, 736
Bme18I GGWCC 3 cut(s) 172, 554, 709
BmgT120I GGNCC 5 cut(s) 71, 172, 554, 709, 912
BmiI GGNNCC 2 cut(s) 168, 474
BmrFI CCNGG 8 cut(s) 74, 101, 118, 134, 356, 477, 552, 736
BmrI ACTGGG 3 cut(s) 319, 727, 750
BmsI GCATC 1 cut(s) 589
BmuI ACTGGG 3 cut(s) 319, 727, 750
BpiI GAAGAC 1 cut(s) 419
BpmI CTGGAG 1 cut(s) 139
BpuEI CTTGAG 1 cut(s) 448
BpuMI CCSGG 3 cut(s) 74, 101, 356
BsaAI YACGTR 3 cut(s) 52, 225, 235
BsaHI GRCGYC 2 cut(s) 167, 264
BsaI GGTCTC 1 cut(s) 774
BsaJI CCNNGG 5 cut(s) 91, 162, 178, 273, 734
BsaXI ACNNNNNCTCC 4 cut(s) 95, 125, 275, 305
Bsc4I CCNNNNNNNGG 7 cut(s) 133, 163, 238, 361, 718, 740, 741
Bse1I ACTGG 6 cut(s) 314, 557, 685, 722, 745, 761
BseBI CCWGG 5 cut(s) 118, 134, 477, 552, 736
BseDI CCNNGG 5 cut(s) 91, 162, 178, 273, 734
BseGI GGATG 6 cut(s) 27, 87, 451, 547, 640, 933
BseLI CCNNNNNNNGG 7 cut(s) 133, 163, 238, 361, 718, 740, 741
BseMII CTCAG 3 cut(s) 48, 419, 621
BseNI ACTGG 6 cut(s) 314, 557, 685, 722, 745, 761
BseSI GKGCMC 1 cut(s) 306
BsgI GTGCAG 2 cut(s) 481, 714
Bsh1236I CGCG 3 cut(s) 180, 200, 275
BshFI GGCC 4 cut(s) 72, 137, 349, 913
BshNI GGYRCC 1 cut(s) 166
BsiHKAI GWGCWC 1 cut(s) 18
BsiSI CCGG 4 cut(s) 74, 101, 170, 355
BslI CCNNNNNNNGG 7 cut(s) 133, 163, 238, 361, 718, 740, 741
BsmAI GTCTC 2 cut(s) 115, 774
BsnI GGCC 4 cut(s) 72, 137, 349, 913
Bso31I GGTCTC 1 cut(s) 774
Bsp1286I GDGCHC 3 cut(s) 18, 306, 748
Bsp143I GATC 4 cut(s) 39, 78, 244, 277
BspACI CCGC 6 cut(s) 178, 180, 204, 273, 275, 810
BspANI GGCC 4 cut(s) 72, 137, 349, 913
BspCNI CTCAG 3 cut(s) 49, 418, 622
BspFNI CGCG 3 cut(s) 180, 200, 275
BspLI GGNNCC 2 cut(s) 168, 474
BspPI GGATC 3 cut(s) 47, 73, 285
BspT107I GGYRCC 1 cut(s) 166
BspTNI GGTCTC 1 cut(s) 774
BsrI ACTGG 6 cut(s) 314, 557, 685, 722, 745, 761
BssECI CCNNGG 5 cut(s) 91, 162, 178, 273, 734
BssMI GATC 4 cut(s) 39, 78, 244, 277
BssNI GRCGYC 2 cut(s) 167, 264
Bst2UI CCWGG 5 cut(s) 118, 134, 477, 552, 736
Bst4CI ACNGT 1 cut(s) 418
Bst6I CTCTTC 1 cut(s) 89
BstACI GRCGYC 2 cut(s) 167, 264
BstBAI YACGTR 3 cut(s) 52, 225, 235
BstC8I GCNNGC 2 cut(s) 204, 655
BstDEI CTNAG 3 cut(s) 57, 405, 630
BstDSI CCRYGG 4 cut(s) 91, 162, 178, 273
BstF5I GGATG 6 cut(s) 27, 87, 451, 547, 640, 933
BstFNI CGCG 3 cut(s) 180, 200, 275
BstH2I RGCGCY 2 cut(s) 170, 257
BstHHI GCGC 4 cut(s) 169, 202, 256, 319
BstKTI GATC 4 cut(s) 42, 81, 247, 280
BstMAI GTCTC 2 cut(s) 115, 774
BstMBI GATC 4 cut(s) 39, 78, 244, 277
BstMWI GCNNNNNNNGC 5 cut(s) 186, 272, 323, 497, 859
BstNI CCWGG 5 cut(s) 118, 134, 477, 552, 736
BstNSI RCATGY 2 cut(s) 49, 460
BstSCI CCNGG 8 cut(s) 72, 99, 116, 132, 354, 475, 550, 734
BstSLI GKGCMC 1 cut(s) 306
BstUI CGCG 3 cut(s) 180, 200, 275
BstV2I GAAGAC 1 cut(s) 419
BsuRI GGCC 4 cut(s) 72, 137, 349, 913
BtgI CCRYGG 4 cut(s) 91, 162, 178, 273
BtgZI GCGATG 1 cut(s) 307
BtsCI GGATG 6 cut(s) 27, 87, 451, 547, 640, 933
BtsIMutI CAGTG 2 cut(s) 678, 915
Cac8I GCNNGC 2 cut(s) 204, 655
CfoI GCGC 4 cut(s) 169, 202, 256, 319
Cfr13I GGNCC 5 cut(s) 71, 172, 554, 709, 912
Cfr42I CCGCGG 2 cut(s) 181, 276
CseI GACGC 2 cut(s) 206, 272
Csp6I GTAC 2 cut(s) 112, 226
CviAII CATG 4 cut(s) 46, 376, 457, 938
CviQI GTAC 2 cut(s) 112, 226
DdeI CTNAG 3 cut(s) 57, 405, 630
DinI GGCGCC 1 cut(s) 168
DpnI GATC 4 cut(s) 41, 80, 246, 279
DpnII GATC 4 cut(s) 39, 78, 244, 277
DraIII CACNNNGTG 1 cut(s) 238
EaeI YGGCCR 1 cut(s) 347
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
Eco147I AGGCCT 1 cut(s) 137
Eco24I GRGCYC 1 cut(s) 748
Eco31I GGTCTC 1 cut(s) 774
Eco47I GGWCC 3 cut(s) 172, 554, 709
Eco72I CACGTG 1 cut(s) 235
EcoRII CCWGG 5 cut(s) 116, 132, 475, 550, 734
EcoT38I GRGCYC 1 cut(s) 748
EgeI GGCGCC 1 cut(s) 168
EheI GGCGCC 1 cut(s) 168
FaeI CATG 4 cut(s) 49, 379, 460, 941
FalI AAGNNNNNCTT 2 cut(s) 659, 691
FatI CATG 4 cut(s) 45, 375, 456, 937
FauI CCCGC 1 cut(s) 211
Fnu4HI GCNGC 3 cut(s) 181, 273, 811
FokI GGATG 6 cut(s) 34, 74, 458, 534, 647, 920
FriOI GRGCYC 1 cut(s) 748
Fsp4HI GCNGC 3 cut(s) 181, 273, 811
FspBI CTAG 4 cut(s) 216, 396, 791, 958
GlaI GCGC 4 cut(s) 168, 201, 255, 318
GluI GCNGC 3 cut(s) 181, 273, 811
GsuI CTGGAG 1 cut(s) 139
HaeII RGCGCY 2 cut(s) 170, 257
HaeIII GGCC 4 cut(s) 72, 137, 349, 913
HapII CCGG 4 cut(s) 74, 101, 170, 355
HgaI GACGC 2 cut(s) 206, 272
HhaI GCGC 4 cut(s) 169, 202, 256, 319
Hin1I GRCGYC 2 cut(s) 167, 264
Hin1II CATG 4 cut(s) 49, 379, 460, 941
Hin6I GCGC 4 cut(s) 167, 200, 254, 317
HinP1I GCGC 4 cut(s) 167, 200, 254, 317
HincII GTYRAC 2 cut(s) 34, 373
HindII GTYRAC 2 cut(s) 34, 373
HpaII CCGG 4 cut(s) 74, 101, 170, 355
HphI GGTGA 1 cut(s) 88
Hpy166II GTNNAC 5 cut(s) 34, 114, 373, 390, 929
Hpy188I TCNGA 2 cut(s) 408, 631
Hpy188III TCNNGA 4 cut(s) 281, 470, 664, 949
Hpy8I GTNNAC 5 cut(s) 34, 114, 373, 390, 929
HpyAV CCTTC 5 cut(s) 148, 280, 520, 664, 875
HpyCH4III ACNGT 1 cut(s) 418
HpyCH4IV ACGT 3 cut(s) 51, 224, 234
HpyCH4V TGCA 4 cut(s) 49, 462, 731, 862
HpyF10VI GCNNNNNNNGC 5 cut(s) 186, 272, 323, 497, 859
HpyF3I CTNAG 3 cut(s) 57, 405, 630
HpySE526I ACGT 3 cut(s) 51, 224, 234
Hsp92I GRCGYC 2 cut(s) 167, 264
Hsp92II CATG 4 cut(s) 49, 379, 460, 941
HspAI GCGC 4 cut(s) 167, 200, 254, 317
KasI GGCGCC 1 cut(s) 166
KspI CCGCGG 2 cut(s) 181, 276
Kzo9I GATC 4 cut(s) 39, 78, 244, 277
LmnI GCTCC 2 cut(s) 103, 607
LweI GCATC 1 cut(s) 589
MaeI CTAG 4 cut(s) 216, 396, 791, 958
MaeII ACGT 3 cut(s) 51, 224, 234
MalI GATC 4 cut(s) 41, 80, 246, 279
MboI GATC 4 cut(s) 39, 78, 244, 277
MboII GAAGA 6 cut(s) 76, 424, 652, 679, 853, 917
MhlI GDGCHC 3 cut(s) 18, 306, 748
MluCI AATT 4 cut(s) 606, 799, 921, 953
Mly113I GGCGCC 1 cut(s) 167
MmeI TCCRAC 1 cut(s) 240
MnlI CCTC 7 cut(s) 92, 154, 185, 402, 414, 625, 859
MroXI GAANNNNTTC 2 cut(s) 290, 674
MseI TTAA 3 cut(s) 360, 642, 765
MslI CAYNNNNRTG 3 cut(s) 380, 831, 936
MspA1I CMGCKG 2 cut(s) 180, 275
MspI CCGG 4 cut(s) 74, 101, 170, 355
MspR9I CCNGG 8 cut(s) 74, 101, 118, 134, 356, 477, 552, 736
MvaI CCWGG 5 cut(s) 118, 134, 477, 552, 736
MvnI CGCG 3 cut(s) 180, 200, 275
MwoI GCNNNNNNNGC 5 cut(s) 186, 272, 323, 497, 859
NarI GGCGCC 1 cut(s) 167
NciI CCSGG 3 cut(s) 74, 101, 356
NdeII GATC 4 cut(s) 39, 78, 244, 277
NlaIII CATG 4 cut(s) 49, 379, 460, 941
NlaIV GGNNCC 2 cut(s) 168, 474
NmeAIII GCCGAG 2 cut(s) 129, 517
NspI RCATGY 2 cut(s) 49, 460
OliI CACNNNNGTG 1 cut(s) 831
PceI AGGCCT 1 cut(s) 137
PciI ACATGT 1 cut(s) 456
PcsI WCGNNNNNNNCGW 2 cut(s) 204, 240
PdmI GAANNNNTTC 2 cut(s) 290, 674
PflMI CCANNNNNTGG 1 cut(s) 238
PfoI TCCNGGA 1 cut(s) 99
PkrI GCNGC 3 cut(s) 182, 274, 812
PluTI GGCGCC 1 cut(s) 170
PmaCI CACGTG 1 cut(s) 235
PmlI CACGTG 1 cut(s) 235
Ppu21I YACGTR 3 cut(s) 52, 225, 235
PscI ACATGT 1 cut(s) 456
PsiI TTATAA 1 cut(s) 798
Psp6I CCWGG 5 cut(s) 116, 132, 475, 550, 734
PspCI CACGTG 1 cut(s) 235
PspGI CCWGG 5 cut(s) 116, 132, 475, 550, 734
PspN4I GGNNCC 2 cut(s) 168, 474
PspPI GGNCC 5 cut(s) 71, 172, 554, 709, 912
RsaI GTAC 2 cut(s) 113, 227
RsaNI GTAC 2 cut(s) 112, 226
RseI CAYNNNNRTG 3 cut(s) 380, 831, 936
SacII CCGCGG 2 cut(s) 181, 276
SaqAI TTAA 3 cut(s) 360, 642, 765
SatI GCNGC 3 cut(s) 181, 273, 811
Sau3AI GATC 4 cut(s) 39, 78, 244, 277
Sau96I GGNCC 5 cut(s) 71, 172, 554, 709, 912
ScrFI CCNGG 8 cut(s) 74, 101, 118, 134, 356, 477, 552, 736
SduI GDGCHC 3 cut(s) 18, 306, 748
SfaNI GCATC 1 cut(s) 589
SfoI GGCGCC 1 cut(s) 168
Sfr303I CCGCGG 2 cut(s) 181, 276
SgrBI CCGCGG 2 cut(s) 181, 276
SinI GGWCC 3 cut(s) 172, 554, 709
SmiMI CAYNNNNRTG 3 cut(s) 380, 831, 936
SmlI CTYRAG 1 cut(s) 427
SmoI CTYRAG 1 cut(s) 427
Sse9I AATT 4 cut(s) 606, 799, 921, 953
SseBI AGGCCT 1 cut(s) 137
SsiI CCGC 6 cut(s) 178, 180, 204, 273, 275, 810
SspDI GGCGCC 1 cut(s) 166
SspMI CTAG 4 cut(s) 216, 396, 791, 958
StuI AGGCCT 1 cut(s) 137
StyD4I CCNGG 8 cut(s) 72, 99, 116, 132, 354, 475, 550, 734
TaaI ACNGT 1 cut(s) 418
TaiI ACGT 3 cut(s) 54, 227, 237
TaqI TCGA 2 cut(s) 663, 700
TaqII GACCGA 1 cut(s) 726
TasI AATT 4 cut(s) 606, 799, 921, 953
TauI GCSGC 3 cut(s) 183, 275, 813
Tru1I TTAA 3 cut(s) 360, 642, 765
Tru9I TTAA 3 cut(s) 360, 642, 765
TscAI CASTG 2 cut(s) 685, 922
TspDTI ATGAA 4 cut(s) 76, 539, 760, 811
TspRI CASTG 2 cut(s) 685, 922
Van91I CCANNNNNTGG 1 cut(s) 238
VpaK11BI GGWCC 3 cut(s) 172, 554, 709
XapI RAATTY 1 cut(s) 953
XceI RCATGY 2 cut(s) 49, 460
XmnI GAANNNNTTC 2 cut(s) 290, 674
XspI CTAG 4 cut(s) 216, 396, 791, 958
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.