Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0000795

Physical Location & Seq

Genomic Coordinates Reverse (-)

45754008 .. 45754370

Gene Structure 363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG245400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGAGGGAATAGAGCACAGGATGGTCAAAGTCAACGGGATCAACATGCACGTAGCTGAGAAAGGTCAAGGCCCGGTGATCCTCTTCATCCACGGCTTCCCGGAGCTGTGGTACACCTGGAGACACCAAATCCAGGCCTTGGCCTCGCTCGGCTACCGAGCCGTGGCGCCGGACCTCCGCGGCTACGGCGACACAGACGCGCCCGCCGACCCGTCTAGCTACACGTACTTCCACGTGGTGGGCGATCTGGTGGCGCTGTTGGACGCCGTAGCCGCGGATCAGGAGAAGGTGTTCGTGGTCGGGCACGACTGGGGTGCTGCTCATCGCTTGGTATTTTTGCCTGTTTCGGCCAGACCGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001676 GO:0002532 GO:0002538 GO:0002539 GO:0003008 GO:0003013 GO:0003674 GO:0003824 GO:0004301 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006954 GO:0007600 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016801 GO:0016803 GO:0019233 GO:0019752 GO:0030258 GO:0032501 GO:0032787 GO:0033559 GO:0042577 GO:0042578 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043651 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045777 GO:0046839 GO:0046872 GO:0050877 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

120

Amino Acids

13.21

Weight (kDa)

5.91

Isoelectric Point (pI)

24.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chlorophyllase	PF07224	19 - 107	4.4e-07	Chlorophyllase
Abhydrolase_1	PF00561	25 - 108	8.4e-19	alpha/beta hydrolase fold
Hydrolase_4	PF12146	26 - 112	2.4e-09	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	27 - 107	1.3e-14	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26740 AT2G26750 AT3G05600 AT3G05600 AT4G15955 AT4G15955
fragaria_vesca	FvH4_2g25390 FvH4_4g18591 FvH4_4g18600 FvH4_4g18600
malus_domestica	MD16G1164900.v1.1 MD16G1165000.v1.1 MD16G1165100.v1.1 MD16G1165300.v1.1 MD16G1165500.v1.1 MD17G1016400.v1.1 MD17G1016500.v1.1
prunus_persica	Prupe.1G124200_v2.0.a1 Prupe.1G124300_v2.0.a1 Prupe.1G124500_v2.0.a1
pyrus_communis	pycom13g14130 pycom16g13960 pycom16g13970 pycom16g13980
rosa_chinensis	RchiOBHm_Chr4g0423281 RchiOBHm_Chr4g0423291 RchiOBHm_Chr4g0423301 RchiOBHm_Chr6g0293571
rosa_laevigata	RLG00000007570 RLG00000007572 RLG00000011940 RLG00000036336
rosa_multiflora	Rmu_co7970336.1_g000001 Rmu_co8074082.1_g000001 Rmu_sc0001290.1_g000009 Rmu_sc0001290.1_g000011 Rmu_sc0002038.1_g000001 Rmu_sc0002038.1_g000010 Rmu_sc0005142.1_g000038 Rmu_sc0006269.1_g000005 Rmu_sc0012160.1_g000002
rosa_roxburghii	Rroxscaffold_5G00365420 Rroxscaffold_5G00365470 Rroxscaffold_5G00365490 Rroxscaffold_7G00174080
rosa_rugosa	Rorug04G0185700 Rorug04G0185800 Rorug04G0185900 Rorug04G0186100 Rorug04G0186200 Rorug06G0236700
rosa_samantha	Rh4AG245400 Rh4AG245500 Rh4AG245600 Rh4BG250700 Rh4BG250900 Rh4BG251000 Rh4CG259000 Rh4CG259200 Rh4CG259400 Rh4DG245400 Rh4DG245600 Rh4DG245700 Rh4DG245800 Rh6CG363400 Rh6DG350300
rosa_wichuraiana	Rw4G021080 Rw4G021090 Rw6G030390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	166
AccB7I	CCANNNNNTGG	2 cut(s)	139, 238
AccII	CGCG	3 cut(s)	180, 200, 275
AciI	CCGC	5 cut(s)	178, 180, 204, 273, 275
AclWI	GGATC	3 cut(s)	47, 73, 285
AcoI	YGGCCR	1 cut(s)	348
AcvI	CACGTG	1 cut(s)	235
AcyI	GRCGYC	2 cut(s)	167, 264
AdeI	CACNNNGTG	1 cut(s)	238
AfaI	GTAC	2 cut(s)	113, 227
AfiI	CCNNNNNNNGG	4 cut(s)	133, 139, 163, 238
AflIII	ACRYGT	1 cut(s)	222
AjnI	CCWGG	2 cut(s)	116, 132
AloI	GAACNNNNNNTCC	2 cut(s)	275, 307
AluBI	AGCT	3 cut(s)	56, 106, 219
AluI	AGCT	3 cut(s)	56, 106, 219
Alw21I	GWGCWC	1 cut(s)	18
Alw26I	GTCTC	1 cut(s)	115
AlwI	GGATC	3 cut(s)	47, 73, 285
AoxI	GGCC	4 cut(s)	70, 135, 141, 348
ApeKI	GCWGC	1 cut(s)	317
Asp700I	GAANNNNTTC	1 cut(s)	290
AspLEI	GCGC	3 cut(s)	169, 202, 256
AspS9I	GGNCC	2 cut(s)	71, 172
AsuC2I	CCSGG	3 cut(s)	74, 101, 357
AsuHPI	GGTGA	1 cut(s)	88
AvaII	GGWCC	1 cut(s)	172
BaeGI	GKGCMC	1 cut(s)	306
BanI	GGYRCC	1 cut(s)	166
BbrPI	CACGTG	1 cut(s)	235
Bbv12I	GWGCWC	1 cut(s)	18
BbvI	GCAGC	1 cut(s)	304
BccI	CCATC	1 cut(s)	16
BceAI	ACGGC	4 cut(s)	109, 146, 202, 251
BcgI	CGANNNNNNTGC	2 cut(s)	296, 330
BciT130I	CCWGG	2 cut(s)	118, 134
BcnI	CCSGG	3 cut(s)	74, 101, 357
BcoDI	GTCTC	1 cut(s)	115
BfaI	CTAG	1 cut(s)	216
BfoI	RGCGCY	2 cut(s)	170, 257
BisI	GCNGC	3 cut(s)	181, 273, 318
BlsI	GCNGC	3 cut(s)	182, 274, 319
Bme1390I	CCNGG	5 cut(s)	74, 101, 118, 134, 357
Bme18I	GGWCC	1 cut(s)	172
BmgT120I	GGNCC	2 cut(s)	71, 172
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	5 cut(s)	74, 101, 118, 134, 357
BmrI	ACTGGG	1 cut(s)	319
BmuI	ACTGGG	1 cut(s)	319
BpmI	CTGGAG	1 cut(s)	139
BpuMI	CCSGG	3 cut(s)	74, 101, 357
BsaAI	YACGTR	3 cut(s)	52, 225, 235
BsaHI	GRCGYC	2 cut(s)	167, 264
BsaJI	CCNNGG	5 cut(s)	91, 138, 162, 178, 273
BsaXI	ACNNNNNCTCC	4 cut(s)	95, 125, 275, 305
Bsc4I	CCNNNNNNNGG	4 cut(s)	133, 139, 163, 238
Bse1I	ACTGG	1 cut(s)	314
BseBI	CCWGG	2 cut(s)	118, 134
BseDI	CCNNGG	5 cut(s)	91, 138, 162, 178, 273
BseGI	GGATG	2 cut(s)	27, 87
BseLI	CCNNNNNNNGG	4 cut(s)	133, 139, 163, 238
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	314
BseSI	GKGCMC	1 cut(s)	306
BseXI	GCAGC	1 cut(s)	304
Bsh1236I	CGCG	3 cut(s)	180, 200, 275
BshFI	GGCC	4 cut(s)	72, 137, 143, 350
BshNI	GGYRCC	1 cut(s)	166
BsiHKAI	GWGCWC	1 cut(s)	18
BsiSI	CCGG	4 cut(s)	74, 101, 170, 356
BslI	CCNNNNNNNGG	4 cut(s)	133, 139, 163, 238
BsmAI	GTCTC	1 cut(s)	115
BsnI	GGCC	4 cut(s)	72, 137, 143, 350
Bsp1286I	GDGCHC	2 cut(s)	18, 306
Bsp143I	GATC	4 cut(s)	39, 78, 244, 277
BspACI	CCGC	5 cut(s)	178, 180, 204, 273, 275
BspANI	GGCC	4 cut(s)	72, 137, 143, 350
BspCNI	CTCAG	1 cut(s)	49
BspFNI	CGCG	3 cut(s)	180, 200, 275
BspLI	GGNNCC	1 cut(s)	168
BspPI	GGATC	3 cut(s)	47, 73, 285
BspT107I	GGYRCC	1 cut(s)	166
BsrI	ACTGG	1 cut(s)	314
BssECI	CCNNGG	5 cut(s)	91, 138, 162, 178, 273
BssMI	GATC	4 cut(s)	39, 78, 244, 277
BssNI	GRCGYC	2 cut(s)	167, 264
BssT1I	CCWWGG	1 cut(s)	138
Bst2UI	CCWGG	2 cut(s)	118, 134
Bst6I	CTCTTC	1 cut(s)	89
BstACI	GRCGYC	2 cut(s)	167, 264
BstBAI	YACGTR	3 cut(s)	52, 225, 235
BstC8I	GCNNGC	1 cut(s)	204
BstDEI	CTNAG	1 cut(s)	57
BstDSI	CCRYGG	4 cut(s)	91, 162, 178, 273
BstF5I	GGATG	2 cut(s)	27, 87
BstFNI	CGCG	3 cut(s)	180, 200, 275
BstH2I	RGCGCY	2 cut(s)	170, 257
BstHHI	GCGC	3 cut(s)	169, 202, 256
BstKTI	GATC	4 cut(s)	42, 81, 247, 280
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	4 cut(s)	39, 78, 244, 277
BstMWI	GCNNNNNNNGC	2 cut(s)	186, 272
BstNI	CCWGG	2 cut(s)	118, 134
BstNSI	RCATGY	1 cut(s)	49
BstSCI	CCNGG	5 cut(s)	72, 99, 116, 132, 355
BstSLI	GKGCMC	1 cut(s)	306
BstUI	CGCG	3 cut(s)	180, 200, 275
BstV1I	GCAGC	1 cut(s)	304
BsuRI	GGCC	4 cut(s)	72, 137, 143, 350
BtgI	CCRYGG	4 cut(s)	91, 162, 178, 273
BtgZI	GCGATG	1 cut(s)	308
BtsCI	GGATG	2 cut(s)	27, 87
Cac8I	GCNNGC	1 cut(s)	204
CfoI	GCGC	3 cut(s)	169, 202, 256
Cfr13I	GGNCC	2 cut(s)	71, 172
Cfr42I	CCGCGG	2 cut(s)	181, 276
CseI	GACGC	2 cut(s)	206, 272
Csp6I	GTAC	2 cut(s)	112, 226
CviAII	CATG	1 cut(s)	46
CviQI	GTAC	2 cut(s)	112, 226
DdeI	CTNAG	1 cut(s)	57
DinI	GGCGCC	1 cut(s)	168
DpnI	GATC	4 cut(s)	41, 80, 246, 279
DpnII	GATC	4 cut(s)	39, 78, 244, 277
DraIII	CACNNNGTG	1 cut(s)	238
EaeI	YGGCCR	1 cut(s)	348
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
Eco130I	CCWWGG	1 cut(s)	138
Eco147I	AGGCCT	1 cut(s)	137
Eco47I	GGWCC	1 cut(s)	172
Eco72I	CACGTG	1 cut(s)	235
EcoRII	CCWGG	2 cut(s)	116, 132
EcoT14I	CCWWGG	1 cut(s)	138
EgeI	GGCGCC	1 cut(s)	168
EheI	GGCGCC	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	1 cut(s)	49
FaiI	YATR	1 cut(s)	47
FatI	CATG	1 cut(s)	45
FauI	CCCGC	1 cut(s)	211
Fnu4HI	GCNGC	3 cut(s)	181, 273, 318
FokI	GGATG	2 cut(s)	34, 74
Fsp4HI	GCNGC	3 cut(s)	181, 273, 318
FspBI	CTAG	1 cut(s)	216
GlaI	GCGC	3 cut(s)	168, 201, 255
GluI	GCNGC	3 cut(s)	181, 273, 318
GsuI	CTGGAG	1 cut(s)	139
HaeII	RGCGCY	2 cut(s)	170, 257
HaeIII	GGCC	4 cut(s)	72, 137, 143, 350
HapII	CCGG	4 cut(s)	74, 101, 170, 356
HgaI	GACGC	2 cut(s)	206, 272
HhaI	GCGC	3 cut(s)	169, 202, 256
Hin1I	GRCGYC	2 cut(s)	167, 264
Hin1II	CATG	1 cut(s)	49
Hin6I	GCGC	3 cut(s)	167, 200, 254
HinP1I	GCGC	3 cut(s)	167, 200, 254
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HpaII	CCGG	4 cut(s)	74, 101, 170, 356
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	2 cut(s)	34, 114
Hpy188III	TCNNGA	1 cut(s)	281
Hpy8I	GTNNAC	2 cut(s)	34, 114
HpyAV	CCTTC	1 cut(s)	280
HpyCH4IV	ACGT	3 cut(s)	51, 224, 234
HpyCH4V	TGCA	1 cut(s)	49
HpyF10VI	GCNNNNNNNGC	2 cut(s)	186, 272
HpyF3I	CTNAG	1 cut(s)	57
HpySE526I	ACGT	3 cut(s)	51, 224, 234
Hsp92I	GRCGYC	2 cut(s)	167, 264
Hsp92II	CATG	1 cut(s)	49
HspAI	GCGC	3 cut(s)	167, 200, 254
KasI	GGCGCC	1 cut(s)	166
KspI	CCGCGG	2 cut(s)	181, 276
Kzo9I	GATC	4 cut(s)	39, 78, 244, 277
LmnI	GCTCC	1 cut(s)	103
Lsp1109I	GCAGC	1 cut(s)	304
MaeI	CTAG	1 cut(s)	216
MaeII	ACGT	3 cut(s)	51, 224, 234
MalI	GATC	4 cut(s)	41, 80, 246, 279
MboI	GATC	4 cut(s)	39, 78, 244, 277
MboII	GAAGA	1 cut(s)	76
MhlI	GDGCHC	2 cut(s)	18, 306
Mly113I	GGCGCC	1 cut(s)	167
MmeI	TCCRAC	1 cut(s)	240
MnlI	CCTC	3 cut(s)	92, 154, 185
MroXI	GAANNNNTTC	1 cut(s)	290
MseI	TTAA	1 cut(s)	361
MspA1I	CMGCKG	2 cut(s)	180, 275
MspI	CCGG	4 cut(s)	74, 101, 170, 356
MspR9I	CCNGG	5 cut(s)	74, 101, 118, 134, 357
MvaI	CCWGG	2 cut(s)	118, 134
MvnI	CGCG	3 cut(s)	180, 200, 275
MwoI	GCNNNNNNNGC	2 cut(s)	186, 272
NarI	GGCGCC	1 cut(s)	167
NciI	CCSGG	3 cut(s)	74, 101, 357
NdeII	GATC	4 cut(s)	39, 78, 244, 277
NlaIII	CATG	1 cut(s)	49
NlaIV	GGNNCC	1 cut(s)	168
NmeAIII	GCCGAG	1 cut(s)	129
NspI	RCATGY	1 cut(s)	49
PceI	AGGCCT	1 cut(s)	137
PcsI	WCGNNNNNNNCGW	2 cut(s)	204, 240
PdmI	GAANNNNTTC	1 cut(s)	290
PflMI	CCANNNNNTGG	2 cut(s)	139, 238
PfoI	TCCNGGA	1 cut(s)	99
PkrI	GCNGC	3 cut(s)	182, 274, 319
PluTI	GGCGCC	1 cut(s)	170
PmaCI	CACGTG	1 cut(s)	235
PmlI	CACGTG	1 cut(s)	235
Ppu21I	YACGTR	3 cut(s)	52, 225, 235
Psp6I	CCWGG	2 cut(s)	116, 132
PspCI	CACGTG	1 cut(s)	235
PspGI	CCWGG	2 cut(s)	116, 132
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	2 cut(s)	71, 172
RsaI	GTAC	2 cut(s)	113, 227
RsaNI	GTAC	2 cut(s)	112, 226
SacII	CCGCGG	2 cut(s)	181, 276
SaqAI	TTAA	1 cut(s)	361
SatI	GCNGC	3 cut(s)	181, 273, 318
Sau3AI	GATC	4 cut(s)	39, 78, 244, 277
Sau96I	GGNCC	2 cut(s)	71, 172
ScrFI	CCNGG	5 cut(s)	74, 101, 118, 134, 357
SduI	GDGCHC	2 cut(s)	18, 306
SfoI	GGCGCC	1 cut(s)	168
Sfr303I	CCGCGG	2 cut(s)	181, 276
SgrBI	CCGCGG	2 cut(s)	181, 276
SinI	GGWCC	1 cut(s)	172
SseBI	AGGCCT	1 cut(s)	137
SsiI	CCGC	5 cut(s)	178, 180, 204, 273, 275
SspDI	GGCGCC	1 cut(s)	166
SspMI	CTAG	1 cut(s)	216
StuI	AGGCCT	1 cut(s)	137
StyD4I	CCNGG	5 cut(s)	72, 99, 116, 132, 355
StyI	CCWWGG	1 cut(s)	138
TaiI	ACGT	3 cut(s)	54, 227, 237
TauI	GCSGC	2 cut(s)	183, 275
Tru1I	TTAA	1 cut(s)	361
Tru9I	TTAA	1 cut(s)	361
TseI	GCWGC	1 cut(s)	317
TspDTI	ATGAA	1 cut(s)	76
Van91I	CCANNNNNTGG	2 cut(s)	139, 238
VpaK11BI	GGWCC	1 cut(s)	172
XceI	RCATGY	1 cut(s)	49
XmnI	GAANNNNTTC	1 cut(s)	290
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.