Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000795

Physical Location & Seq

Genomic Coordinates Reverse (-)

32359034 .. 32360514

Gene Structure 1481 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0186200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGAGTCGCCCCAAGAATGACCGGGCAATAGACCTGGGTAGTCCATTGCTCAATGACATCGCCGATGCTTTCTTGAAGAGCGCAACCATCGGTGTTACCAAAGCTGCTGCAGAGGATACTTACTATGCCGTCAAAAGGGGGAGCGTTTCAAGTCAGGACTTTGAGTACACTTTGAAGAATATGTGTAAGGAAGGTGCATATTATGGAACTGTTGCTGGAGTTTTTGTGACGACAGAGTATGGTCTAGAGAGTGTTCGTGGGAGAAGAGACTGGAAGAATACCATGATTGCGGGTGCAATGACAGGGGCTGTGATGTCTGCAGTGAACAAAAACAACAAGGACAAAATTATGGTGGATGCAATGGTTGCAGGTACCATTGCAGGTGCTGCATTATTCCTCAGAAATTGGGCCACAGGATCTCTCCGCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001676 GO:0002532 GO:0002538 GO:0002539 GO:0003008 GO:0003013 GO:0003674 GO:0003824 GO:0004301 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006954 GO:0007600 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016801 GO:0016803 GO:0019233 GO:0019752 GO:0030258 GO:0032501 GO:0032787 GO:0033559 GO:0042577 GO:0042578 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043651 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045777 GO:0046839 GO:0046872 GO:0050877 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

143

Amino Acids

15.4

Weight (kDa)

9.38

Isoelectric Point (pI)

28.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	18 - 131	1.6e-13	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26740 AT2G26750 AT3G05600 AT3G05600 AT4G15955 AT4G15955
fragaria_vesca	FvH4_2g25390 FvH4_4g18591 FvH4_4g18600 FvH4_4g18600
malus_domestica	MD16G1164900.v1.1 MD16G1165000.v1.1 MD16G1165100.v1.1 MD16G1165300.v1.1 MD16G1165500.v1.1 MD17G1016400.v1.1 MD17G1016500.v1.1
prunus_persica	Prupe.1G124200_v2.0.a1 Prupe.1G124300_v2.0.a1 Prupe.1G124500_v2.0.a1
pyrus_communis	pycom13g14130 pycom16g13960 pycom16g13970 pycom16g13980
rosa_chinensis	RchiOBHm_Chr4g0423281 RchiOBHm_Chr4g0423291 RchiOBHm_Chr4g0423301 RchiOBHm_Chr6g0293571
rosa_laevigata	RLG00000007570 RLG00000007572 RLG00000011940 RLG00000036336
rosa_multiflora	Rmu_co7970336.1_g000001 Rmu_co8074082.1_g000001 Rmu_sc0001290.1_g000009 Rmu_sc0001290.1_g000011 Rmu_sc0002038.1_g000001 Rmu_sc0002038.1_g000010 Rmu_sc0005142.1_g000038 Rmu_sc0006269.1_g000005 Rmu_sc0012160.1_g000002
rosa_roxburghii	Rroxscaffold_5G00365420 Rroxscaffold_5G00365470 Rroxscaffold_5G00365490 Rroxscaffold_7G00174080
rosa_rugosa	Rorug04G0185700 Rorug04G0185800 Rorug04G0185900 Rorug04G0186100 Rorug04G0186200 Rorug06G0236700
rosa_samantha	Rh4AG245400 Rh4AG245500 Rh4AG245600 Rh4BG250700 Rh4BG250900 Rh4BG251000 Rh4CG259000 Rh4CG259200 Rh4CG259400 Rh4DG245400 Rh4DG245600 Rh4DG245700 Rh4DG245800 Rh6CG363400 Rh6DG350300
rosa_wichuraiana	Rw4G021080 Rw4G021090 Rw6G030390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	371
Acc36I	ACCTGC	2 cut(s)	359, 371
Acc65I	GGTACC	1 cut(s)	371
AccB1I	GGYRCC	1 cut(s)	371
AciI	CCGC	2 cut(s)	290, 424
AclWI	GGATC	1 cut(s)	424
AfaI	GTAC	2 cut(s)	167, 373
AfiI	CCNNNNNNNGG	1 cut(s)	135
AgsI	TTSAA	3 cut(s)	76, 150, 175
AjnI	CCWGG	1 cut(s)	33
AluBI	AGCT	1 cut(s)	104
AluI	AGCT	1 cut(s)	104
Alw26I	GTCTC	1 cut(s)	261
AlwI	GGATC	1 cut(s)	424
AlwNI	CAGNNNCTG	2 cut(s)	308, 386
AoxI	GGCC	1 cut(s)	408
ApeKI	GCWGC	3 cut(s)	104, 107, 386
Asp718I	GGTACC	1 cut(s)	371
AspLEI	GCGC	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	408
AsuC2I	CCSGG	1 cut(s)	23
BanI	GGYRCC	1 cut(s)	371
BbvI	GCAGC	3 cut(s)	91, 94, 373
BccI	CCATC	1 cut(s)	95
BceAI	ACGGC	1 cut(s)	113
BciT130I	CCWGG	1 cut(s)	35
BciVI	GTATCC	1 cut(s)	109
BcnI	CCSGG	1 cut(s)	23
BcoDI	GTCTC	1 cut(s)	261
BfaI	CTAG	1 cut(s)	245
BfmI	CTRYAG	2 cut(s)	108, 318
BfuAI	ACCTGC	2 cut(s)	359, 371
BfuI	GTATCC	1 cut(s)	109
BisI	GCNGC	3 cut(s)	105, 108, 387
BlsI	GCNGC	3 cut(s)	106, 109, 388
Bme1390I	CCNGG	2 cut(s)	23, 35
BmgT120I	GGNCC	1 cut(s)	408
BmiI	GGNNCC	1 cut(s)	373
BmrFI	CCNGG	2 cut(s)	23, 35
BmsI	GCATC	2 cut(s)	55, 346
BpmI	CTGGAG	1 cut(s)	237
BpuMI	CCSGG	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	34
BsaXI	ACNNNNNCTCC	2 cut(s)	210, 240
Bsc4I	CCNNNNNNNGG	1 cut(s)	135
Bse1I	ACTGG	1 cut(s)	275
Bse3DI	GCAATG	4 cut(s)	44, 303, 366, 375
BseBI	CCWGG	1 cut(s)	35
BseDI	CCNNGG	1 cut(s)	34
BseGI	GGATG	1 cut(s)	361
BseLI	CCNNNNNNNGG	1 cut(s)	135
BseMI	GCAATG	4 cut(s)	44, 303, 366, 375
BseMII	CTCAG	1 cut(s)	412
BseNI	ACTGG	1 cut(s)	275
BseXI	GCAGC	3 cut(s)	91, 94, 373
BshFI	GGCC	1 cut(s)	410
BshNI	GGYRCC	1 cut(s)	371
BsiSI	CCGG	1 cut(s)	22
BslI	CCNNNNNNNGG	1 cut(s)	135
BsmAI	GTCTC	1 cut(s)	261
BsnI	GGCC	1 cut(s)	410
Bsp143I	GATC	1 cut(s)	416
BspACI	CCGC	2 cut(s)	290, 424
BspANI	GGCC	1 cut(s)	410
BspCNI	CTCAG	1 cut(s)	411
BspLI	GGNNCC	1 cut(s)	373
BspMAI	CTGCAG	2 cut(s)	112, 322
BspMI	ACCTGC	2 cut(s)	359, 371
BspPI	GGATC	1 cut(s)	424
BspQI	GCTCTTC	1 cut(s)	71
BspT107I	GGYRCC	1 cut(s)	371
BsrDI	GCAATG	4 cut(s)	44, 303, 366, 375
BsrI	ACTGG	1 cut(s)	275
BssECI	CCNNGG	1 cut(s)	34
BssMI	GATC	1 cut(s)	416
Bst2UI	CCWGG	1 cut(s)	35
Bst4CI	ACNGT	1 cut(s)	211
Bst6I	CTCTTC	2 cut(s)	71, 259
BstAPI	GCANNNNNTGC	2 cut(s)	365, 386
BstDEI	CTNAG	1 cut(s)	398
BstF5I	GGATG	1 cut(s)	361
BstHHI	GCGC	1 cut(s)	83
BstKTI	GATC	1 cut(s)	419
BstMAI	GTCTC	1 cut(s)	261
BstMBI	GATC	1 cut(s)	416
BstMWI	GCNNNNNNNGC	2 cut(s)	365, 386
BstNI	CCWGG	1 cut(s)	35
BstSCI	CCNGG	2 cut(s)	21, 33
BstSFI	CTRYAG	2 cut(s)	108, 318
BstV1I	GCAGC	3 cut(s)	91, 94, 373
BstX2I	RGATCY	1 cut(s)	416
BstYI	RGATCY	1 cut(s)	416
BsuI	GTATCC	1 cut(s)	109
BsuRI	GGCC	1 cut(s)	410
BtgZI	GCGATG	1 cut(s)	43
BtsCI	GGATG	1 cut(s)	361
BtsI	GCAGTG	1 cut(s)	327
BtsIMutI	CAGTG	1 cut(s)	327
BveI	ACCTGC	2 cut(s)	359, 371
CaiI	CAGNNNCTG	2 cut(s)	308, 386
CfoI	GCGC	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	408
Csp6I	GTAC	2 cut(s)	166, 372
CviAII	CATG	1 cut(s)	283
CviJI	RGCY	3 cut(s)	104, 308, 410
CviKI_1	RGCY	3 cut(s)	104, 308, 410
CviQI	GTAC	2 cut(s)	166, 372
DdeI	CTNAG	1 cut(s)	398
DpnI	GATC	1 cut(s)	418
DpnII	GATC	1 cut(s)	416
Eam1104I	CTCTTC	2 cut(s)	71, 259
EarI	CTCTTC	2 cut(s)	71, 259
EcoRII	CCWGG	1 cut(s)	33
FaeI	CATG	1 cut(s)	286
FaiI	YATR	7 cut(s)	126, 182, 199, 204, 240, 284, 350
FatI	CATG	1 cut(s)	282
FauI	CCCGC	1 cut(s)	283
Fnu4HI	GCNGC	3 cut(s)	105, 108, 387
FokI	GGATG	1 cut(s)	368
Fsp4HI	GCNGC	3 cut(s)	105, 108, 387
FspBI	CTAG	1 cut(s)	245
GlaI	GCGC	1 cut(s)	82
GluI	GCNGC	3 cut(s)	105, 108, 387
GsuI	CTGGAG	1 cut(s)	237
HaeIII	GGCC	1 cut(s)	410
HapII	CCGG	1 cut(s)	22
HhaI	GCGC	1 cut(s)	83
Hin1II	CATG	1 cut(s)	286
Hin6I	GCGC	1 cut(s)	81
HinP1I	GCGC	1 cut(s)	81
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	22
Hpy166II	GTNNAC	2 cut(s)	168, 325
Hpy188I	TCNGA	1 cut(s)	401
Hpy188III	TCNNGA	3 cut(s)	73, 155, 245
Hpy8I	GTNNAC	2 cut(s)	168, 325
HpyAV	CCTTC	1 cut(s)	185
HpyCH4III	ACNGT	1 cut(s)	211
HpyCH4V	TGCA	8 cut(s)	110, 197, 296, 320, 359, 368, 380, 389
HpyF10VI	GCNNNNNNNGC	2 cut(s)	365, 386
HpyF3I	CTNAG	1 cut(s)	398
Hsp92II	CATG	1 cut(s)	286
HspAI	GCGC	1 cut(s)	81
KpnI	GGTACC	1 cut(s)	375
Kzo9I	GATC	1 cut(s)	416
LguI	GCTCTTC	1 cut(s)	71
LmnI	GCTCC	1 cut(s)	141
Lsp1109I	GCAGC	3 cut(s)	91, 94, 373
LweI	GCATC	2 cut(s)	55, 346
MaeI	CTAG	1 cut(s)	245
MaeIII	GTNAC	2 cut(s)	94, 226
MalI	GATC	1 cut(s)	418
MboI	GATC	1 cut(s)	416
MboII	GAAGA	4 cut(s)	88, 187, 276, 286
MflI	RGATCY	1 cut(s)	416
MluCI	AATT	2 cut(s)	345, 403
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	2 cut(s)	106, 407
MspI	CCGG	1 cut(s)	22
MspR9I	CCNGG	2 cut(s)	23, 35
MvaI	CCWGG	1 cut(s)	35
MwoI	GCNNNNNNNGC	2 cut(s)	365, 386
NciI	CCSGG	1 cut(s)	23
NdeII	GATC	1 cut(s)	416
NlaIII	CATG	1 cut(s)	286
NlaIV	GGNNCC	1 cut(s)	373
NmuCI	GTSAC	1 cut(s)	226
PaqCI	CACCTGC	1 cut(s)	371
PciSI	GCTCTTC	1 cut(s)	71
PkrI	GCNGC	3 cut(s)	106, 109, 388
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	33
PspGI	CCWGG	1 cut(s)	33
PspN4I	GGNNCC	1 cut(s)	373
PspPI	GGNCC	1 cut(s)	408
PstI	CTGCAG	2 cut(s)	112, 322
PstNI	CAGNNNCTG	2 cut(s)	308, 386
PsuI	RGATCY	1 cut(s)	416
RsaI	GTAC	2 cut(s)	167, 373
RsaNI	GTAC	2 cut(s)	166, 372
SapI	GCTCTTC	1 cut(s)	71
SatI	GCNGC	3 cut(s)	105, 108, 387
Sau3AI	GATC	1 cut(s)	416
Sau96I	GGNCC	1 cut(s)	408
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	2 cut(s)	23, 35
SetI	ASST	5 cut(s)	36, 106, 196, 373, 385
SfaNI	GCATC	2 cut(s)	55, 346
SfcI	CTRYAG	2 cut(s)	108, 318
Sse9I	AATT	2 cut(s)	345, 403
SsiI	CCGC	2 cut(s)	290, 424
SspMI	CTAG	1 cut(s)	245
StyD4I	CCNGG	2 cut(s)	21, 33
TaaI	ACNGT	1 cut(s)	211
TasI	AATT	2 cut(s)	345, 403
TatI	WGTACW	1 cut(s)	165
TscAI	CASTG	1 cut(s)	327
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	3 cut(s)	104, 107, 386
Tsp45I	GTSAC	1 cut(s)	226
TspRI	CASTG	1 cut(s)	327
XbaI	TCTAGA	1 cut(s)	244
XspI	CTAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.